Wall clock time and date at job start Mon Mar 30 2020 01:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46973 * 2 1 4 4 C 1.34777 * 120.00477 * 290.32482 * 3 2 1 5 5 O 1.21549 * 120.00267 * 173.37681 * 4 3 2 6 6 C 1.47887 * 119.99636 * 353.65548 * 4 3 2 7 7 C 1.39921 * 120.02523 * 11.78035 * 6 4 3 8 8 C 1.38335 * 120.35099 * 179.71784 * 7 6 4 9 9 C 1.37741 * 120.41420 * 0.55870 * 8 7 6 10 10 C 1.40746 * 120.04297 * 359.71956 * 9 8 7 11 11 C 1.41440 * 120.18219 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00269 * 146.72966 * 11 10 9 13 13 C 1.39942 * 119.99478 * 326.73236 * 11 10 9 14 14 N 1.30828 * 119.99614 * 172.00556 * 13 11 10 15 15 Si 1.86794 * 120.00312 * 352.00370 * 13 11 10 16 16 H 1.48498 * 109.47088 * 89.86529 * 15 13 11 17 17 H 1.48499 * 109.47360 * 209.86723 * 15 13 11 18 18 H 1.48506 * 109.47014 * 329.86880 * 15 13 11 19 19 C 1.38996 * 120.01958 * 192.05412 * 6 4 3 20 20 C 1.46504 * 119.99673 * 110.32875 * 3 2 1 21 21 H 1.09001 * 109.47045 * 187.07154 * 20 3 2 22 22 C 1.52997 * 109.46898 * 307.06737 * 20 3 2 23 23 C 1.52994 * 109.47440 * 67.07037 * 20 3 2 24 24 O 1.42905 * 109.46974 * 292.38517 * 23 20 3 25 25 H 1.08993 * 109.47014 * 309.44314 * 1 2 3 26 26 H 1.08998 * 109.47167 * 69.44492 * 1 2 3 27 27 H 1.08999 * 109.46808 * 189.44159 * 1 2 3 28 28 H 1.09008 * 109.46844 * 240.00440 * 2 1 3 29 29 H 1.09000 * 109.47161 * 120.00382 * 2 1 3 30 30 H 1.07992 * 119.82144 * 359.97060 * 7 6 4 31 31 H 1.08001 * 119.78229 * 180.25473 * 8 7 6 32 32 H 1.08003 * 119.97815 * 179.74713 * 9 8 7 33 33 H 0.96998 * 119.99974 * 179.97438 * 14 13 11 34 34 H 1.07994 * 120.20698 * 359.97438 * 19 6 4 35 35 H 1.09001 * 109.46932 * 60.00348 * 22 20 3 36 36 H 1.09003 * 109.47484 * 179.97438 * 22 20 3 37 37 H 1.08997 * 109.47691 * 300.00329 * 22 20 3 38 38 H 1.08998 * 109.47451 * 52.38521 * 23 20 3 39 39 H 1.09000 * 109.47025 * 172.38867 * 23 20 3 40 40 H 0.96705 * 113.99654 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.8608 2.1517 -1.0945 5 8 2.1554 3.3303 -1.0556 6 6 1.3236 1.5646 -2.3410 7 6 0.7510 0.2880 -2.3236 8 6 0.2412 -0.2653 -3.4844 9 6 0.3015 0.4287 -4.6727 10 6 0.8790 1.7117 -4.7108 11 6 0.9420 2.4272 -5.9293 12 1 0.8591 3.5040 -5.9282 13 6 1.1118 1.7397 -7.1363 14 7 1.0139 2.3799 -8.2731 15 14 1.4783 -0.0919 -7.1245 16 1 0.2029 -0.8520 -7.1546 17 1 2.2913 -0.4418 -8.3168 18 1 2.2318 -0.4380 -5.8925 19 6 1.3923 2.2782 -3.5318 20 6 2.6781 1.9248 1.1898 21 1 2.8572 2.9910 1.0507 22 6 1.7815 1.7135 2.4114 23 6 4.0120 1.2075 1.4059 24 8 3.7680 -0.1544 1.7634 25 1 -0.3633 0.6528 0.7936 26 1 -0.3633 0.3608 -0.9622 27 1 -0.3633 -1.0138 0.1686 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.7031 -0.2665 -1.3981 31 1 -0.2025 -1.2496 -3.4597 32 1 -0.0950 -0.0117 -5.5756 33 1 1.1320 1.9035 -9.1097 34 1 1.8370 3.2622 -3.5506 35 1 1.6023 0.6474 2.5505 36 1 2.2725 2.1176 3.2967 37 1 0.8311 2.2245 2.2574 38 1 4.5967 1.2427 0.4867 39 1 4.5638 1.7000 2.2066 40 1 4.5712 -0.6710 1.9157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293879633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:29 Heat of formation + Delta-G solvation = 6.572486 kcal Electronic energy + Delta-G solvation = -22174.864593 eV Core-core repulsion = 18957.531256 eV Total energy + Delta-G solvation = -3217.333337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42451 -37.81849 -37.06255 -35.87849 -33.89472 -32.77083 -30.39600 -29.95000 -29.46096 -26.46112 -25.16351 -23.48523 -23.05907 -20.93485 -20.61496 -18.98594 -17.91126 -17.35085 -16.57377 -16.12066 -15.74860 -15.11518 -15.03911 -14.41126 -13.99949 -13.64701 -13.48272 -13.15256 -12.82133 -12.79375 -12.72463 -12.51054 -12.17296 -12.04653 -11.79970 -11.47918 -11.07381 -11.06505 -11.01794 -10.56106 -10.52674 -10.29914 -10.14260 -9.78190 -9.33793 -9.29719 -8.90520 -8.40951 -7.80370 -7.58204 -6.89116 -4.49908 1.94190 2.54911 3.07413 3.19629 3.26612 3.27264 3.59479 3.96814 4.11893 4.53241 4.77520 4.99490 5.10685 5.17633 5.25350 5.32440 5.41334 5.46561 5.50642 5.68282 5.72312 5.93841 5.94237 6.00925 6.03179 6.20620 6.33486 6.38014 6.54091 6.69375 6.72810 6.87864 7.06225 7.26800 7.41337 7.45146 7.53040 7.74947 7.80387 8.01902 8.34381 8.57146 8.69804 8.78132 10.13921 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028888 B = 0.004885 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.040963 B = 5730.357445 C = 5991.370168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.091 3.909 3 N -0.603 5.603 4 C 0.564 3.436 5 O -0.552 6.552 6 C -0.112 4.112 7 C -0.281 4.281 8 C -0.095 4.095 9 C -0.217 4.217 10 C 0.079 3.921 11 C -0.446 4.446 12 H 0.092 0.908 13 C 0.080 3.920 14 N -0.818 5.818 15 Si 0.915 3.085 16 H -0.271 1.271 17 H -0.293 1.293 18 H -0.244 1.244 19 C -0.134 4.134 20 C 0.137 3.863 21 H 0.109 0.891 22 C -0.154 4.154 23 C 0.067 3.933 24 O -0.566 6.566 25 H 0.055 0.945 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.187 0.813 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.285 0.715 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -7.866 16.915 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.031 4.031 3 N -0.336 5.336 4 C 0.356 3.644 5 O -0.431 6.431 6 C -0.115 4.115 7 C -0.299 4.299 8 C -0.113 4.113 9 C -0.236 4.236 10 C 0.076 3.924 11 C -0.475 4.475 12 H 0.110 0.890 13 C -0.137 4.137 14 N -0.443 5.443 15 Si 0.743 3.257 16 H -0.197 1.197 17 H -0.221 1.221 18 H -0.167 1.167 19 C -0.154 4.154 20 C 0.033 3.967 21 H 0.127 0.873 22 C -0.212 4.212 23 C -0.012 4.012 24 O -0.372 6.372 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.203 0.797 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.002 -6.966 16.583 18.235 hybrid contribution 0.686 -0.890 -0.290 1.161 sum 3.688 -7.856 16.293 18.460 Atomic orbital electron populations 1.23318 0.96148 1.02574 1.05653 1.22223 0.93673 0.82936 1.04239 1.47840 1.59253 1.13476 1.13053 1.18913 0.76604 0.85435 0.83447 1.90671 1.52054 1.16022 1.84397 1.19381 1.03679 0.96269 0.92124 1.23501 1.07444 0.97383 1.01570 1.20620 0.99559 0.98042 0.93094 1.21286 1.06747 0.98423 0.97145 1.17722 0.89749 0.91581 0.93332 1.19495 1.42571 0.96711 0.88753 0.89002 1.26116 0.91846 1.01028 0.94725 1.69628 1.36662 1.39193 0.98827 0.86302 0.79189 0.81877 0.78357 1.19727 1.22114 1.16746 1.21307 1.02428 1.00171 0.91475 1.21105 0.90974 0.99007 0.85624 0.87313 1.22025 0.99653 1.03019 0.96477 1.22631 0.97140 0.82623 0.98816 1.86461 1.35938 1.22565 1.92242 0.92631 0.86949 0.91547 0.88679 0.88537 0.79743 0.88344 0.88046 0.90496 0.86929 0.91251 0.92067 0.92427 0.93161 0.92919 0.77832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.82 8.66 37.16 0.32 -2.50 16 2 C 0.09 1.22 4.67 -4.04 -0.02 1.20 16 3 N -0.60 -9.42 2.46 -197.60 -0.49 -9.91 16 4 C 0.56 11.37 7.40 -12.31 -0.09 11.28 16 5 O -0.55 -12.62 15.75 5.32 0.08 -12.53 16 6 C -0.11 -2.42 5.78 -105.04 -0.61 -3.03 16 7 C -0.28 -5.39 5.58 -38.92 -0.22 -5.60 16 8 C -0.09 -1.93 10.01 -39.73 -0.40 -2.33 16 9 C -0.22 -5.11 6.92 -38.82 -0.27 -5.38 16 10 C 0.08 2.03 5.13 -106.87 -0.55 1.48 16 11 C -0.45 -12.32 9.62 -37.73 -0.36 -12.68 16 12 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 13 C 0.08 2.13 5.49 -17.34 -0.10 2.03 16 14 N -0.82 -22.23 13.93 55.55 0.77 -21.45 16 15 Si 0.91 20.90 24.38 -169.99 -4.14 16.75 16 16 H -0.27 -5.93 6.63 56.52 0.37 -5.56 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.24 -5.66 6.61 56.52 0.37 -5.29 16 19 C -0.13 -3.29 9.33 -38.44 -0.36 -3.65 16 20 C 0.14 1.78 3.15 -67.93 -0.21 1.57 16 21 H 0.11 1.57 6.92 -51.93 -0.36 1.21 16 22 C -0.15 -1.68 8.79 37.16 0.33 -1.35 16 23 C 0.07 0.69 6.85 37.15 0.25 0.95 16 24 O -0.57 -5.22 10.20 -35.23 -0.36 -5.58 16 25 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.11 1.73 4.43 -57.51 -0.25 1.48 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 1.37 5.58 -51.92 -0.29 1.08 16 29 H 0.10 1.14 4.82 -51.93 -0.25 0.89 16 30 H 0.19 2.88 1.44 -140.77 -0.20 2.68 16 31 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.10 2.38 4.31 -52.48 -0.23 2.15 16 33 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 34 H 0.11 2.85 7.69 -52.49 -0.40 2.44 16 35 H 0.07 0.75 6.31 -51.93 -0.33 0.42 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.37 1.90 9.12 45.56 0.42 2.32 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -30.82 308.26 -6.23 -37.05 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.47 Total: 9.03 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.28 Total: -18.00 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.29 Total: -31.36 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.28 Total: -18.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.14 Total: 16.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.82 -6.23 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293879633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.618 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds