Wall clock time and date at job start Mon Mar 30 2020 01:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46494 * 109.47370 * 2 1 4 4 C 1.34783 * 119.99970 * 297.41762 * 3 2 1 5 5 O 1.21586 * 120.00319 * 186.34193 * 4 3 2 6 6 C 1.47645 * 119.99775 * 6.33517 * 4 3 2 7 7 C 1.40018 * 119.89329 * 307.80558 * 6 4 3 8 8 C 1.36318 * 120.10202 * 179.76118 * 7 6 4 9 9 C 1.40891 * 119.89217 * 0.51185 * 8 7 6 10 10 C 1.41107 * 120.10339 * 179.71867 * 9 8 7 11 11 H 1.07997 * 120.00078 * 171.10127 * 10 9 8 12 12 C 1.40228 * 119.99961 * 351.10059 * 10 9 8 13 13 N 1.30644 * 120.00342 * 323.44842 * 12 10 9 14 14 Si 1.86804 * 119.99918 * 143.44570 * 12 10 9 15 15 H 1.48501 * 109.47143 * 94.99703 * 14 12 10 16 16 H 1.48503 * 109.47176 * 215.00159 * 14 12 10 17 17 H 1.48507 * 109.47140 * 334.99968 * 14 12 10 18 18 C 1.40892 * 119.79190 * 359.74625 * 9 8 7 19 19 C 1.36309 * 119.89117 * 359.97438 * 18 9 8 20 20 C 1.46495 * 120.00589 * 117.41881 * 3 2 1 21 21 H 1.09000 * 109.47622 * 185.64765 * 20 3 2 22 22 C 1.53008 * 109.46864 * 305.64268 * 20 3 2 23 23 C 1.53001 * 109.47389 * 65.63943 * 20 3 2 24 24 O 1.42895 * 109.47234 * 294.20693 * 23 20 3 25 25 H 1.09002 * 109.46935 * 300.00009 * 1 2 3 26 26 H 1.09004 * 109.47595 * 60.00149 * 1 2 3 27 27 H 1.09005 * 109.47520 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46993 * 239.99458 * 2 1 3 29 29 H 1.09005 * 109.47096 * 119.99704 * 2 1 3 30 30 H 1.07994 * 119.94767 * 0.02562 * 7 6 4 31 31 H 1.08003 * 120.05463 * 180.23707 * 8 7 6 32 32 H 0.97000 * 120.00191 * 179.97438 * 13 12 10 33 33 H 1.08002 * 120.04716 * 179.97438 * 18 9 8 34 34 H 1.08003 * 119.94297 * 179.97438 * 19 18 9 35 35 H 1.08999 * 109.47247 * 299.99932 * 22 20 3 36 36 H 1.08996 * 109.46976 * 179.97438 * 22 20 3 37 37 H 1.09000 * 109.46595 * 59.99868 * 22 20 3 38 38 H 1.09000 * 109.46618 * 54.20184 * 23 20 3 39 39 H 1.09002 * 109.47271 * 174.19995 * 23 20 3 40 40 H 0.96701 * 114.00270 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 1.7362 2.1957 -1.0361 5 8 2.2356 3.3028 -1.0926 6 6 0.8209 1.7434 -2.1027 7 6 1.0460 0.5185 -2.7425 8 6 0.2008 0.0946 -3.7244 9 6 -0.8944 0.8961 -4.1026 10 6 -1.7687 0.4644 -5.1225 11 1 -2.6841 1.0046 -5.3136 12 6 -1.4489 -0.6661 -5.8881 13 7 -0.2066 -0.9033 -6.2156 14 14 -2.7992 -1.8331 -6.4397 15 1 -3.2400 -1.4679 -7.8099 16 1 -2.2809 -3.2248 -6.4408 17 1 -3.9504 -1.7344 -5.5067 18 6 -1.1136 2.1304 -3.4595 19 6 -0.2663 2.5433 -2.4748 20 6 2.8133 1.8771 1.1261 21 1 2.9991 2.9435 0.9981 22 6 2.0487 1.6458 2.4311 23 6 4.1472 1.1294 1.1772 24 8 3.9106 -0.2470 1.4795 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8881 -0.0933 -2.4547 31 1 0.3729 -0.8522 -4.2148 32 1 0.0146 -1.6855 -6.7448 33 1 -1.9516 2.7484 -3.7464 34 1 -0.4333 3.4895 -1.9816 35 1 1.0984 2.1784 2.3948 36 1 2.6404 2.0144 3.2690 37 1 1.8629 0.5794 2.5592 38 1 4.6453 1.2087 0.2109 39 1 4.7799 1.5675 1.9491 40 1 4.7141 -0.7828 1.5283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293910531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:31 Heat of formation + Delta-G solvation = -65.509882 kcal Electronic energy + Delta-G solvation = -22087.672934 eV Core-core repulsion = 18867.213871 eV Total energy + Delta-G solvation = -3220.459063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.75750 -37.58712 -36.77293 -35.14211 -34.02431 -32.23245 -29.85894 -29.44372 -29.09355 -26.32259 -25.86318 -23.07730 -22.26584 -20.92473 -20.41942 -18.52236 -17.60032 -17.53125 -16.17958 -16.02182 -15.47502 -14.85443 -14.58112 -14.15860 -13.77068 -13.60013 -13.27063 -13.03185 -12.79610 -12.63732 -12.25821 -12.18640 -12.10377 -11.72880 -11.60455 -11.25414 -11.21422 -11.11691 -10.93477 -10.75584 -10.63985 -10.24710 -10.14071 -9.99731 -9.54047 -8.99956 -8.82287 -8.12250 -7.61443 -7.57987 -7.15874 -4.47732 2.45579 2.89204 2.94935 3.05738 3.09647 3.52623 3.71789 3.72741 4.26773 4.35884 4.94734 5.15615 5.29484 5.46388 5.56156 5.59432 5.64150 5.77808 5.83951 5.91227 6.06876 6.12137 6.27870 6.30752 6.35518 6.41457 6.54832 6.77572 6.88523 6.93794 7.12142 7.19443 7.23464 7.47230 7.56127 7.72570 7.90164 7.95755 8.08232 8.16014 8.43738 8.68755 8.83841 9.02370 9.74471 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.004613 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.949684 B = 6068.904207 C = 6408.298583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 N -0.609 5.609 4 C 0.580 3.420 5 O -0.571 6.571 6 C -0.283 4.283 7 C -0.055 4.055 8 C -0.200 4.200 9 C 0.121 3.879 10 C -0.447 4.447 11 H 0.086 0.914 12 C 0.088 3.912 13 N -0.744 5.744 14 Si 0.901 3.099 15 H -0.267 1.267 16 H -0.271 1.271 17 H -0.254 1.254 18 C -0.246 4.246 19 C -0.030 4.030 20 C 0.137 3.863 21 H 0.105 0.895 22 C -0.154 4.154 23 C 0.068 3.932 24 O -0.565 6.565 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.288 0.712 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -3.366 10.637 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.007 4.007 3 N -0.342 5.342 4 C 0.374 3.626 5 O -0.451 6.451 6 C -0.287 4.287 7 C -0.074 4.074 8 C -0.219 4.219 9 C 0.118 3.882 10 C -0.473 4.473 11 H 0.104 0.896 12 C -0.138 4.138 13 N -0.364 5.364 14 Si 0.723 3.277 15 H -0.192 1.192 16 H -0.196 1.196 17 H -0.177 1.177 18 C -0.265 4.265 19 C -0.049 4.049 20 C 0.033 3.967 21 H 0.123 0.877 22 C -0.212 4.212 23 C -0.011 4.011 24 O -0.370 6.370 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.174 -2.718 10.469 11.594 hybrid contribution 0.179 -0.793 -0.325 0.876 sum 4.353 -3.511 10.144 11.584 Atomic orbital electron populations 1.22478 0.95965 1.01825 1.03907 1.21596 0.94334 0.81991 1.02742 1.47985 1.53710 1.13191 1.19331 1.18846 0.79438 0.83272 0.81056 1.90625 1.53512 1.22346 1.78607 1.18591 1.03194 1.00742 1.06146 1.20407 0.97495 0.93643 0.95830 1.20929 0.98510 1.01574 1.00937 1.17628 0.90447 0.89606 0.90521 1.19775 1.05890 1.08790 1.12823 0.89603 1.26163 0.96108 0.98106 0.93386 1.69877 1.20442 1.23892 1.22236 0.86422 0.82219 0.79268 0.79793 1.19160 1.19586 1.17742 1.20471 1.03470 0.98735 1.03842 1.20120 0.93306 0.96005 0.95440 1.21042 0.89562 0.99028 0.87061 0.87697 1.22026 1.00272 1.02985 0.95881 1.22615 0.97269 0.82227 0.99009 1.86501 1.36008 1.20339 1.94184 0.93738 0.88911 0.92694 0.91490 0.89415 0.89093 0.86471 0.90046 0.88761 0.89260 0.92509 0.92282 0.91338 0.93358 0.93238 0.78062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.45 37.15 0.35 -2.75 16 2 C 0.12 1.88 4.75 -4.05 -0.02 1.87 16 3 N -0.61 -10.80 2.52 -167.29 -0.42 -11.22 16 4 C 0.58 12.70 7.01 -12.42 -0.09 12.61 16 5 O -0.57 -13.94 16.42 5.29 0.09 -13.86 16 6 C -0.28 -6.52 3.32 -104.73 -0.35 -6.87 16 7 C -0.05 -1.26 7.09 -39.61 -0.28 -1.54 16 8 C -0.20 -4.96 8.85 -39.27 -0.35 -5.31 16 9 C 0.12 3.09 5.69 -106.80 -0.61 2.49 16 10 C -0.45 -11.16 8.96 -37.75 -0.34 -11.50 16 11 H 0.09 2.06 8.05 -52.49 -0.42 1.64 16 12 C 0.09 2.04 4.85 -17.31 -0.08 1.96 16 13 N -0.74 -17.69 11.23 55.56 0.62 -17.07 16 14 Si 0.90 16.99 29.68 -169.99 -5.04 11.95 16 15 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.25 -4.83 7.11 56.52 0.40 -4.42 16 18 C -0.25 -5.98 9.73 -39.27 -0.38 -6.37 16 19 C -0.03 -0.70 9.38 -39.61 -0.37 -1.07 16 20 C 0.14 2.02 3.13 -67.93 -0.21 1.81 16 21 H 0.11 1.69 6.96 -51.93 -0.36 1.32 16 22 C -0.15 -1.93 8.89 37.16 0.33 -1.60 16 23 C 0.07 0.81 6.84 37.16 0.25 1.06 16 24 O -0.57 -6.21 10.22 -35.23 -0.36 -6.57 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.86 4.43 -51.93 -0.23 1.63 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.15 5.28 -51.93 -0.27 0.88 16 29 H 0.09 1.29 4.80 -51.93 -0.25 1.04 16 30 H 0.09 1.92 5.96 -52.49 -0.31 1.60 16 31 H 0.12 2.94 5.81 -52.48 -0.30 2.64 16 32 H 0.29 6.08 8.29 -40.82 -0.34 5.75 16 33 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.09 2.01 8.06 -52.48 -0.42 1.58 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.87 6.26 -51.93 -0.33 0.55 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.37 2.47 9.12 45.56 0.42 2.88 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -28.94 319.25 -7.03 -35.97 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.58 Total: 11.19 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.14 Total: -15.20 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.20 Total: -28.29 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.27 Total: -20.42 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.04 Total: 11.95 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.94 -7.03 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293910531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.539 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds