Wall clock time and date at job start Mon Mar 30 2020 01:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46494 * 109.47370 * 2 1 4 4 C 1.34783 * 119.99970 * 297.41762 * 3 2 1 5 5 O 1.21586 * 120.00319 * 186.34193 * 4 3 2 6 6 C 1.47645 * 119.99775 * 6.33517 * 4 3 2 7 7 C 1.40018 * 119.89329 * 307.80558 * 6 4 3 8 8 C 1.36318 * 120.10202 * 179.76118 * 7 6 4 9 9 C 1.40891 * 119.89217 * 0.51185 * 8 7 6 10 10 C 1.41107 * 120.10339 * 179.71867 * 9 8 7 11 11 H 1.07997 * 120.00078 * 171.10127 * 10 9 8 12 12 C 1.40228 * 119.99961 * 351.10059 * 10 9 8 13 13 N 1.30644 * 120.00342 * 323.44842 * 12 10 9 14 14 Si 1.86804 * 119.99918 * 143.44570 * 12 10 9 15 15 H 1.48501 * 109.47143 * 94.99703 * 14 12 10 16 16 H 1.48503 * 109.47176 * 215.00159 * 14 12 10 17 17 H 1.48507 * 109.47140 * 334.99968 * 14 12 10 18 18 C 1.40892 * 119.79190 * 359.74625 * 9 8 7 19 19 C 1.36309 * 119.89117 * 359.97438 * 18 9 8 20 20 C 1.46495 * 120.00589 * 117.41881 * 3 2 1 21 21 H 1.09000 * 109.47622 * 185.64765 * 20 3 2 22 22 C 1.53008 * 109.46864 * 305.64268 * 20 3 2 23 23 C 1.53001 * 109.47389 * 65.63943 * 20 3 2 24 24 O 1.42895 * 109.47234 * 294.20693 * 23 20 3 25 25 H 1.09002 * 109.46935 * 300.00009 * 1 2 3 26 26 H 1.09004 * 109.47595 * 60.00149 * 1 2 3 27 27 H 1.09005 * 109.47520 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46993 * 239.99458 * 2 1 3 29 29 H 1.09005 * 109.47096 * 119.99704 * 2 1 3 30 30 H 1.07994 * 119.94767 * 0.02562 * 7 6 4 31 31 H 1.08003 * 120.05463 * 180.23707 * 8 7 6 32 32 H 0.97000 * 120.00191 * 179.97438 * 13 12 10 33 33 H 1.08002 * 120.04716 * 179.97438 * 18 9 8 34 34 H 1.08003 * 119.94297 * 179.97438 * 19 18 9 35 35 H 1.08999 * 109.47247 * 299.99932 * 22 20 3 36 36 H 1.08996 * 109.46976 * 179.97438 * 22 20 3 37 37 H 1.09000 * 109.46595 * 59.99868 * 22 20 3 38 38 H 1.09000 * 109.46618 * 54.20184 * 23 20 3 39 39 H 1.09002 * 109.47271 * 174.19995 * 23 20 3 40 40 H 0.96701 * 114.00270 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 1.7362 2.1957 -1.0361 5 8 2.2356 3.3028 -1.0926 6 6 0.8209 1.7434 -2.1027 7 6 1.0460 0.5185 -2.7425 8 6 0.2008 0.0946 -3.7244 9 6 -0.8944 0.8961 -4.1026 10 6 -1.7687 0.4644 -5.1225 11 1 -2.6841 1.0046 -5.3136 12 6 -1.4489 -0.6661 -5.8881 13 7 -0.2066 -0.9033 -6.2156 14 14 -2.7992 -1.8331 -6.4397 15 1 -3.2400 -1.4679 -7.8099 16 1 -2.2809 -3.2248 -6.4408 17 1 -3.9504 -1.7344 -5.5067 18 6 -1.1136 2.1304 -3.4595 19 6 -0.2663 2.5433 -2.4748 20 6 2.8133 1.8771 1.1261 21 1 2.9991 2.9435 0.9981 22 6 2.0487 1.6458 2.4311 23 6 4.1472 1.1294 1.1772 24 8 3.9106 -0.2470 1.4795 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8881 -0.0933 -2.4547 31 1 0.3729 -0.8522 -4.2148 32 1 0.0146 -1.6855 -6.7448 33 1 -1.9516 2.7484 -3.7464 34 1 -0.4333 3.4895 -1.9816 35 1 1.0984 2.1784 2.3948 36 1 2.6404 2.0144 3.2690 37 1 1.8629 0.5794 2.5592 38 1 4.6453 1.2087 0.2109 39 1 4.7799 1.5675 1.9491 40 1 4.7141 -0.7828 1.5283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293910531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:30 Heat of formation + Delta-G solvation = -83.517229 kcal Electronic energy + Delta-G solvation = -22088.453791 eV Core-core repulsion = 18867.213871 eV Total energy + Delta-G solvation = -3221.239920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32641 -39.15528 -38.19040 -36.49246 -35.76851 -33.53482 -31.60919 -31.30731 -30.50015 -27.72923 -27.22046 -24.59022 -23.79228 -22.76715 -21.93520 -19.98507 -19.38263 -18.65030 -17.69154 -17.46881 -17.12419 -16.25115 -16.04654 -15.59599 -15.26409 -15.06047 -14.73976 -14.55350 -14.46695 -13.96069 -13.88709 -13.66915 -13.48174 -13.06063 -12.96298 -12.88388 -12.86390 -12.52730 -12.31555 -12.19979 -12.03642 -11.84613 -11.66977 -11.32791 -10.96559 -10.78474 -10.49926 -9.63843 -9.48888 -9.39580 -8.92041 -6.36426 0.68177 1.19094 1.35835 1.43692 1.56655 1.91749 2.14961 2.19620 2.58009 3.40381 3.68997 3.78882 4.09469 4.12648 4.21061 4.37860 4.39818 4.45801 4.55104 4.58257 4.62219 4.78576 4.85632 4.96557 5.01741 5.04496 5.08740 5.16988 5.23927 5.34168 5.35097 5.55039 5.60173 5.78442 5.91054 6.01810 6.08804 6.23520 6.54006 6.56657 6.80434 6.94203 6.95591 7.35586 8.02924 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.004613 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.949684 B = 6068.904207 C = 6408.298583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.120 3.880 3 N -0.598 5.598 4 C 0.575 3.425 5 O -0.604 6.604 6 C -0.285 4.285 7 C -0.046 4.046 8 C -0.218 4.218 9 C 0.096 3.904 10 C -0.478 4.478 11 H 0.085 0.915 12 C 0.053 3.947 13 N -0.772 5.772 14 Si 0.977 3.023 15 H -0.258 1.258 16 H -0.259 1.259 17 H -0.257 1.257 18 C -0.261 4.261 19 C -0.038 4.038 20 C 0.124 3.876 21 H 0.088 0.912 22 C -0.144 4.144 23 C 0.078 3.922 24 O -0.575 6.575 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.301 0.699 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -5.102 11.907 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.002 4.002 3 N -0.330 5.330 4 C 0.368 3.632 5 O -0.488 6.488 6 C -0.289 4.289 7 C -0.065 4.065 8 C -0.237 4.237 9 C 0.093 3.907 10 C -0.503 4.503 11 H 0.103 0.897 12 C -0.171 4.171 13 N -0.393 5.393 14 Si 0.796 3.204 15 H -0.182 1.182 16 H -0.183 1.183 17 H -0.180 1.180 18 C -0.280 4.280 19 C -0.057 4.057 20 C 0.021 3.979 21 H 0.106 0.894 22 C -0.202 4.202 23 C -0.001 4.001 24 O -0.383 6.383 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.602 -4.483 11.774 13.412 hybrid contribution 0.129 -0.247 -0.660 0.716 sum 4.731 -4.730 11.114 12.972 Atomic orbital electron populations 1.22394 0.96310 1.02486 1.02563 1.21660 0.93929 0.81131 1.03469 1.48004 1.52942 1.13132 1.18894 1.18694 0.79346 0.83306 0.81836 1.90600 1.54932 1.23715 1.79508 1.18793 1.03019 1.00503 1.06566 1.20508 0.97397 0.93642 0.94948 1.20924 0.99241 1.01577 1.01923 1.17941 0.91169 0.90220 0.91400 1.20039 1.06035 1.10538 1.13683 0.89734 1.26994 0.98432 0.98789 0.92840 1.69859 1.22209 1.24787 1.22425 0.85276 0.78608 0.77122 0.79373 1.18189 1.18283 1.18043 1.20598 1.04119 0.98868 1.04447 1.20266 0.93605 0.96391 0.95410 1.21363 0.91088 0.98682 0.86739 0.89367 1.21955 0.99824 1.03061 0.95345 1.22397 0.95408 0.82873 0.99430 1.86408 1.37928 1.19939 1.94050 0.92939 0.92260 0.91089 0.92318 0.86941 0.87394 0.87145 0.88740 0.88253 0.88735 0.93727 0.89523 0.91044 0.94930 0.90021 0.75501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 9.45 71.98 0.68 -5.20 16 2 C 0.12 3.71 4.75 86.38 0.41 4.12 16 3 N -0.60 -20.69 2.52 -801.43 -2.02 -22.71 16 4 C 0.58 25.37 7.01 86.73 0.61 25.97 16 5 O -0.60 -30.00 16.42 -3.99 -0.07 -30.06 16 6 C -0.28 -13.38 3.32 -19.93 -0.07 -13.44 16 7 C -0.05 -2.15 7.09 22.25 0.16 -1.99 16 8 C -0.22 -11.02 8.85 22.47 0.20 -10.82 16 9 C 0.10 5.04 5.69 -21.28 -0.12 4.92 16 10 C -0.48 -24.39 8.96 23.46 0.21 -24.18 16 11 H 0.08 4.18 8.05 -2.91 -0.02 4.16 16 12 C 0.05 2.47 4.85 85.35 0.41 2.88 16 13 N -0.77 -36.79 11.23 21.87 0.25 -36.55 16 14 Si 0.98 34.31 29.68 68.60 2.04 36.34 16 15 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 16 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 17 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 18 C -0.26 -13.17 9.73 22.47 0.22 -12.95 16 19 C -0.04 -1.83 9.38 22.25 0.21 -1.62 16 20 C 0.12 3.46 3.13 45.00 0.14 3.60 16 21 H 0.09 2.78 6.96 -2.39 -0.02 2.76 16 22 C -0.14 -3.24 8.89 71.98 0.64 -2.60 16 23 C 0.08 1.65 6.84 71.98 0.49 2.14 16 24 O -0.57 -10.60 10.22 -148.98 -1.52 -12.12 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 2.39 4.43 -2.39 -0.01 2.37 16 27 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.06 1.94 5.28 -2.38 -0.01 1.92 16 29 H 0.11 2.98 4.80 -2.38 -0.01 2.96 16 30 H 0.11 4.54 5.96 -2.91 -0.02 4.52 16 31 H 0.11 5.67 5.81 -2.91 -0.02 5.65 16 32 H 0.30 12.54 8.29 -92.71 -0.77 11.77 16 33 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 34 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.58 6.26 -2.39 -0.01 1.56 16 38 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.39 3.73 9.12 -74.06 -0.68 3.06 16 Total: -1.00 -63.61 319.25 3.26 -60.35 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.39 Total: 33.92 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 4.19 Total: -29.18 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -1.77 Total: -59.25 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.59 Total: -42.18 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.04 Total: 36.34 kcal Total: -63.61 3.26 -60.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293910531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.165 kcal (2) G-P(sol) polarization free energy of solvation -63.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds