Wall clock time and date at job start Mon Mar 30 2020 01:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47323 * 2 1 4 4 C 1.37099 * 120.00201 * 85.09063 * 3 2 1 5 5 H 1.07994 * 119.99942 * 220.23111 * 4 3 2 6 6 C 1.38954 * 119.99511 * 40.23810 * 4 3 2 7 7 N 1.31409 * 120.00056 * 17.91889 * 6 4 3 8 8 Si 1.86802 * 119.99569 * 197.92050 * 6 4 3 9 9 H 1.48501 * 109.46854 * 59.99912 * 8 6 4 10 10 H 1.48497 * 109.47202 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47290 * 300.00223 * 8 6 4 12 12 C 1.34781 * 119.99627 * 265.09656 * 3 2 1 13 13 O 1.21286 * 119.99731 * 183.47811 * 12 3 2 14 14 C 1.50700 * 119.99890 * 3.48400 * 12 3 2 15 15 H 1.08996 * 109.47087 * 36.80944 * 14 12 3 16 16 C 1.52995 * 109.46833 * 276.80307 * 14 12 3 17 17 C 1.50706 * 109.46981 * 177.29759 * 16 14 12 18 18 C 1.38232 * 119.99971 * 269.73100 * 17 16 14 19 19 C 1.38235 * 120.00090 * 179.76829 * 18 17 16 20 20 C 1.38242 * 119.99525 * 0.50129 * 19 18 17 21 21 C 1.38234 * 120.00181 * 359.75024 * 20 19 18 22 22 C 1.38232 * 120.00187 * 359.97438 * 21 20 19 23 23 O 1.42898 * 109.46852 * 156.80612 * 14 12 3 24 24 C 1.42897 * 114.00432 * 269.99807 * 23 14 12 25 25 H 1.09009 * 109.47061 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47407 * 300.00334 * 1 2 3 27 27 H 1.09000 * 109.47437 * 60.00808 * 1 2 3 28 28 H 1.09000 * 109.47407 * 239.99666 * 2 1 3 29 29 H 1.09004 * 109.47317 * 119.99695 * 2 1 3 30 30 H 0.97002 * 119.99533 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47640 * 297.29514 * 16 14 12 32 32 H 1.09002 * 109.47404 * 57.30272 * 16 14 12 33 33 H 1.08002 * 120.00027 * 359.97438 * 18 17 16 34 34 H 1.07993 * 120.00618 * 180.23124 * 19 18 17 35 35 H 1.08005 * 119.99463 * 179.72690 * 20 19 18 36 36 H 1.08000 * 119.99824 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00632 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47238 * 60.00060 * 24 23 14 39 39 H 1.08995 * 109.47960 * 180.02562 * 24 23 14 40 40 H 1.09002 * 109.46753 * 300.00223 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1511 2.0614 1.1829 5 1 1.8709 3.1027 1.2414 6 6 2.6463 1.4109 2.3065 7 7 3.3076 0.2830 2.1746 8 14 2.3717 2.1397 4.0044 9 1 0.9141 2.2491 4.2663 10 1 2.9933 1.2604 5.0270 11 1 2.9889 3.4888 4.0697 12 6 2.3370 1.9832 -1.1630 13 8 2.8007 3.1039 -1.1586 14 6 2.1171 1.2639 -2.4689 15 1 1.2021 0.6746 -2.4094 16 6 3.3029 0.3381 -2.7471 17 6 3.0526 -0.4304 -4.0191 18 6 2.4120 -1.6545 -3.9723 19 6 2.1781 -2.3572 -5.1395 20 6 2.5941 -1.8406 -6.3524 21 6 3.2393 -0.6190 -6.3986 22 6 3.4681 0.0864 -5.2320 23 8 2.0005 2.2192 -3.5251 24 6 0.6625 2.6594 -3.7658 25 1 -0.3634 -1.0278 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.6530 -0.1712 2.9591 31 1 4.2105 0.9322 -2.8543 32 1 3.4213 -0.3599 -1.9183 33 1 2.0913 -2.0603 -3.0242 34 1 1.6743 -3.3118 -5.1034 35 1 2.4152 -2.3918 -7.2639 36 1 3.5646 -0.2156 -7.3462 37 1 3.9726 1.0407 -5.2680 38 1 0.2660 3.1267 -2.8644 39 1 0.6588 3.3821 -4.5817 40 1 0.0419 1.8047 -4.0352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294467847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:45 Heat of formation + Delta-G solvation = -52.683426 kcal Electronic energy + Delta-G solvation = -22235.765465 eV Core-core repulsion = 19015.862598 eV Total energy + Delta-G solvation = -3219.902866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.59024 -38.58157 -36.75664 -34.85592 -33.17487 -31.91590 -30.72965 -29.45359 -29.03355 -26.07146 -25.33985 -23.56865 -22.41884 -22.10633 -20.75812 -19.13782 -17.00271 -16.63017 -16.45197 -15.79218 -15.21289 -15.03676 -14.73804 -14.58005 -14.12207 -13.71629 -13.45153 -13.25641 -12.91852 -12.89923 -12.64442 -12.29812 -12.02971 -11.77617 -11.62231 -11.28453 -11.10535 -10.99609 -10.80422 -10.78637 -10.64967 -10.37148 -10.32098 -10.04752 -9.75319 -8.96762 -8.76919 -8.58834 -8.04422 -7.42082 -6.29919 -4.01065 1.50044 1.56319 3.19262 3.25033 3.28298 3.78785 3.95887 4.07978 4.25821 4.80331 4.98375 5.02717 5.07794 5.15744 5.28506 5.44733 5.59399 5.61353 5.65854 5.67540 5.75937 5.84140 5.88187 5.95221 5.98678 6.13567 6.20244 6.25038 6.27630 6.40374 6.53371 6.61011 6.64018 6.86775 6.87050 7.16664 7.23525 7.50553 7.58828 8.28591 8.53377 9.20269 9.38785 10.01483 10.72504 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.005118 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.345692 B = 5469.764057 C = 5879.662005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.088 3.912 3 N -0.439 5.439 4 C -0.307 4.307 5 H 0.086 0.914 6 C 0.039 3.961 7 N -0.872 5.872 8 Si 0.918 3.082 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.439 3.561 13 O -0.563 6.563 14 C 0.087 3.913 15 H 0.069 0.931 16 C -0.075 4.075 17 C -0.068 4.068 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.099 4.099 23 O -0.361 6.361 24 C 0.035 3.965 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.268 0.732 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -6.755 -11.832 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.036 4.036 3 N -0.160 5.160 4 C -0.435 4.435 5 H 0.104 0.896 6 C -0.165 4.165 7 N -0.510 5.510 8 Si 0.745 3.255 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.226 3.774 13 O -0.445 6.445 14 C 0.025 3.975 15 H 0.087 0.913 16 C -0.113 4.113 17 C -0.068 4.068 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.117 4.117 23 O -0.278 6.278 24 C -0.062 4.062 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.922 -6.258 -11.801 13.922 hybrid contribution -0.459 0.099 0.999 1.104 sum -4.381 -6.159 -10.802 13.184 Atomic orbital electron populations 1.22155 0.98163 1.00214 1.01483 1.21707 0.92147 0.85911 1.03803 1.43523 1.55860 1.11849 1.04804 1.19326 1.41752 0.96853 0.85538 0.89583 1.25396 0.94264 0.96572 1.00233 1.69831 1.32674 1.17854 1.30629 0.86132 0.78680 0.79149 0.81545 1.19940 1.20942 1.19736 1.20929 0.82353 0.88576 0.85542 1.90529 1.46752 1.20280 1.86895 1.22035 0.98629 0.89504 0.87303 0.91272 1.20686 0.98389 0.96988 0.95209 1.19878 0.97394 0.94395 0.95116 1.21125 0.99248 0.94813 0.98503 1.21069 1.00587 0.99842 0.92647 1.21070 0.99809 0.96426 0.97612 1.21114 0.99716 0.95302 0.98097 1.21118 0.99310 0.99457 0.91795 1.87900 1.26779 1.60970 1.52136 1.22706 0.84209 0.98555 1.00737 0.93151 0.92122 0.94354 0.93218 0.87033 0.92183 0.89634 0.88614 0.85999 0.86414 0.86649 0.86465 0.85811 0.94088 0.90007 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.10 37.15 0.38 -2.52 16 2 C 0.09 1.86 5.35 -4.04 -0.02 1.84 16 3 N -0.44 -11.02 2.51 -114.81 -0.29 -11.31 16 4 C -0.31 -8.46 8.83 -14.93 -0.13 -8.60 16 5 H 0.09 2.49 7.83 -52.49 -0.41 2.08 16 6 C 0.04 1.04 5.07 -17.47 -0.09 0.95 16 7 N -0.87 -23.17 11.38 55.50 0.63 -22.54 16 8 Si 0.92 20.53 29.59 -169.99 -5.03 15.50 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.44 10.96 6.82 -10.98 -0.07 10.88 16 13 O -0.56 -16.44 16.58 -13.20 -0.22 -16.65 16 14 C 0.09 1.71 1.67 -27.89 -0.05 1.66 16 15 H 0.07 1.25 5.96 -51.93 -0.31 0.94 16 16 C -0.08 -1.33 4.76 -27.88 -0.13 -1.47 16 17 C -0.07 -1.03 4.94 -104.62 -0.52 -1.55 16 18 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 19 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 20 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 21 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 22 C -0.10 -1.41 9.34 -39.58 -0.37 -1.78 16 23 O -0.36 -7.02 9.38 -53.98 -0.51 -7.52 16 24 C 0.03 0.56 10.81 101.05 1.09 1.65 16 25 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 28 H 0.05 0.93 4.79 -51.93 -0.25 0.68 16 29 H 0.11 2.60 5.55 -51.93 -0.29 2.32 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16 32 H 0.10 1.71 6.51 -51.93 -0.34 1.37 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.48 8.09 -51.93 -0.42 0.06 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -31.81 333.68 -7.64 -39.45 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.76 Total: 4.64 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.49 Total: -6.59 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.34 Total: -33.85 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.72 Total: -24.18 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.81 -7.64 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294467847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.238 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds