Wall clock time and date at job start Mon Mar 30 2020 01:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47323 * 2 1 4 4 C 1.37099 * 120.00201 * 85.09063 * 3 2 1 5 5 H 1.07994 * 119.99942 * 220.23111 * 4 3 2 6 6 C 1.38954 * 119.99511 * 40.23810 * 4 3 2 7 7 N 1.31409 * 120.00056 * 17.91889 * 6 4 3 8 8 Si 1.86802 * 119.99569 * 197.92050 * 6 4 3 9 9 H 1.48501 * 109.46854 * 59.99912 * 8 6 4 10 10 H 1.48497 * 109.47202 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47290 * 300.00223 * 8 6 4 12 12 C 1.34781 * 119.99627 * 265.09656 * 3 2 1 13 13 O 1.21286 * 119.99731 * 183.47811 * 12 3 2 14 14 C 1.50700 * 119.99890 * 3.48400 * 12 3 2 15 15 H 1.08996 * 109.47087 * 36.80944 * 14 12 3 16 16 C 1.52995 * 109.46833 * 276.80307 * 14 12 3 17 17 C 1.50706 * 109.46981 * 177.29759 * 16 14 12 18 18 C 1.38232 * 119.99971 * 269.73100 * 17 16 14 19 19 C 1.38235 * 120.00090 * 179.76829 * 18 17 16 20 20 C 1.38242 * 119.99525 * 0.50129 * 19 18 17 21 21 C 1.38234 * 120.00181 * 359.75024 * 20 19 18 22 22 C 1.38232 * 120.00187 * 359.97438 * 21 20 19 23 23 O 1.42898 * 109.46852 * 156.80612 * 14 12 3 24 24 C 1.42897 * 114.00432 * 269.99807 * 23 14 12 25 25 H 1.09009 * 109.47061 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47407 * 300.00334 * 1 2 3 27 27 H 1.09000 * 109.47437 * 60.00808 * 1 2 3 28 28 H 1.09000 * 109.47407 * 239.99666 * 2 1 3 29 29 H 1.09004 * 109.47317 * 119.99695 * 2 1 3 30 30 H 0.97002 * 119.99533 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47640 * 297.29514 * 16 14 12 32 32 H 1.09002 * 109.47404 * 57.30272 * 16 14 12 33 33 H 1.08002 * 120.00027 * 359.97438 * 18 17 16 34 34 H 1.07993 * 120.00618 * 180.23124 * 19 18 17 35 35 H 1.08005 * 119.99463 * 179.72690 * 20 19 18 36 36 H 1.08000 * 119.99824 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00632 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47238 * 60.00060 * 24 23 14 39 39 H 1.08995 * 109.47960 * 180.02562 * 24 23 14 40 40 H 1.09002 * 109.46753 * 300.00223 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1511 2.0614 1.1829 5 1 1.8709 3.1027 1.2414 6 6 2.6463 1.4109 2.3065 7 7 3.3076 0.2830 2.1746 8 14 2.3717 2.1397 4.0044 9 1 0.9141 2.2491 4.2663 10 1 2.9933 1.2604 5.0270 11 1 2.9889 3.4888 4.0697 12 6 2.3370 1.9832 -1.1630 13 8 2.8007 3.1039 -1.1586 14 6 2.1171 1.2639 -2.4689 15 1 1.2021 0.6746 -2.4094 16 6 3.3029 0.3381 -2.7471 17 6 3.0526 -0.4304 -4.0191 18 6 2.4120 -1.6545 -3.9723 19 6 2.1781 -2.3572 -5.1395 20 6 2.5941 -1.8406 -6.3524 21 6 3.2393 -0.6190 -6.3986 22 6 3.4681 0.0864 -5.2320 23 8 2.0005 2.2192 -3.5251 24 6 0.6625 2.6594 -3.7658 25 1 -0.3634 -1.0278 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.6530 -0.1712 2.9591 31 1 4.2105 0.9322 -2.8543 32 1 3.4213 -0.3599 -1.9183 33 1 2.0913 -2.0603 -3.0242 34 1 1.6743 -3.3118 -5.1034 35 1 2.4152 -2.3918 -7.2639 36 1 3.5646 -0.2156 -7.3462 37 1 3.9726 1.0407 -5.2680 38 1 0.2660 3.1267 -2.8644 39 1 0.6588 3.3821 -4.5817 40 1 0.0419 1.8047 -4.0352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294467847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:45 Heat of formation + Delta-G solvation = -70.527341 kcal Electronic energy + Delta-G solvation = -22236.539235 eV Core-core repulsion = 19015.862598 eV Total energy + Delta-G solvation = -3220.676637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12985 -39.87144 -38.34663 -36.82908 -34.56774 -33.74693 -31.68813 -31.18393 -30.35462 -27.52567 -27.02754 -25.16713 -23.78335 -23.33662 -21.90234 -20.95296 -18.86826 -18.27767 -17.65489 -17.35335 -16.96549 -16.47634 -15.91532 -15.83971 -15.73651 -15.32783 -15.13696 -14.57722 -14.36764 -14.17554 -13.88940 -13.61207 -13.56965 -13.46306 -13.15412 -12.87255 -12.71512 -12.60113 -12.39930 -12.12510 -12.02453 -11.88326 -11.84890 -11.66913 -11.32173 -10.94543 -10.05172 -9.72259 -9.51867 -9.41874 -8.31791 -6.12208 0.49912 0.59753 1.38391 1.40478 1.50452 1.95732 2.26221 2.64817 2.95461 3.03763 3.10849 3.75044 3.88903 4.06053 4.12967 4.17074 4.23623 4.32439 4.39108 4.44262 4.46651 4.52246 4.61085 4.71825 4.74016 4.77379 4.86570 4.94679 5.00539 5.21124 5.26455 5.31437 5.42192 5.56947 5.65828 5.69999 5.81631 6.03882 6.21063 6.23570 6.56836 7.17711 7.42218 8.03989 8.68363 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.005118 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.345692 B = 5469.764057 C = 5879.662005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.086 3.914 3 N -0.446 5.446 4 C -0.343 4.343 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.887 5.887 8 Si 0.980 3.020 9 H -0.262 1.262 10 H -0.269 1.269 11 H -0.280 1.280 12 C 0.423 3.577 13 O -0.622 6.622 14 C 0.104 3.896 15 H 0.090 0.910 16 C -0.067 4.067 17 C -0.086 4.086 18 C -0.127 4.127 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.116 4.116 23 O -0.377 6.377 24 C 0.028 3.972 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.275 0.725 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.021 0.979 39 H 0.106 0.894 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 -9.155 -13.158 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.037 4.037 3 N -0.166 5.166 4 C -0.471 4.471 5 H 0.076 0.924 6 C -0.195 4.195 7 N -0.524 5.524 8 Si 0.804 3.196 9 H -0.187 1.187 10 H -0.194 1.194 11 H -0.206 1.206 12 C 0.212 3.788 13 O -0.508 6.508 14 C 0.043 3.957 15 H 0.108 0.892 16 C -0.104 4.104 17 C -0.086 4.086 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.134 4.134 23 O -0.295 6.295 24 C -0.068 4.068 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.130 0.870 38 H 0.040 0.960 39 H 0.124 0.876 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.344 -8.704 -13.132 16.637 hybrid contribution 0.000 0.819 1.350 1.579 sum -5.344 -7.885 -11.782 15.151 Atomic orbital electron populations 1.22062 0.95394 1.02544 1.01066 1.21851 0.94423 0.83597 1.03849 1.43808 1.55355 1.13089 1.04339 1.19288 1.43906 0.96439 0.87493 0.92417 1.26110 0.93318 0.96845 1.03178 1.69903 1.32275 1.18397 1.31870 0.85208 0.79142 0.78012 0.77259 1.18700 1.19392 1.20616 1.21950 0.81277 0.88200 0.87410 1.90470 1.49392 1.22870 1.88029 1.21866 1.00177 0.89149 0.84547 0.89235 1.20528 0.96600 0.96436 0.96864 1.19653 0.99738 0.95350 0.93847 1.21277 0.99140 0.94226 0.99854 1.21422 0.99891 1.00606 0.92007 1.21491 0.98109 0.95885 0.98801 1.21388 0.99280 0.95547 0.98103 1.21146 1.00069 0.99601 0.92555 1.87889 1.29030 1.61085 1.51459 1.22940 0.83002 1.00119 1.00712 0.89338 0.93936 0.93391 0.90918 0.89127 0.91567 0.92003 0.89245 0.85214 0.83556 0.83456 0.84237 0.87031 0.96039 0.87576 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 10.10 71.98 0.73 -4.51 16 2 C 0.09 3.60 5.35 86.38 0.46 4.07 16 3 N -0.45 -23.12 2.51 -635.54 -1.59 -24.72 16 4 C -0.34 -19.72 8.83 84.04 0.74 -18.98 16 5 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 6 C 0.01 0.45 5.07 84.93 0.43 0.88 16 7 N -0.89 -47.56 11.38 21.66 0.25 -47.32 16 8 Si 0.98 42.50 29.59 68.60 2.03 44.53 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.42 22.02 6.82 87.66 0.60 22.62 16 13 O -0.62 -38.52 16.58 14.88 0.25 -38.27 16 14 C 0.10 4.15 1.67 29.85 0.05 4.20 16 15 H 0.09 3.15 5.96 -2.39 -0.01 3.14 16 16 C -0.07 -2.42 4.76 29.85 0.14 -2.28 16 17 C -0.09 -2.54 4.94 -19.86 -0.10 -2.64 16 18 C -0.13 -3.14 9.70 22.27 0.22 -2.92 16 19 C -0.12 -2.41 10.05 22.27 0.22 -2.18 16 20 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 21 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 22 C -0.12 -3.21 9.34 22.27 0.21 -3.00 16 23 O -0.38 -14.85 9.38 -131.05 -1.23 -16.08 16 24 C 0.03 0.89 10.81 113.37 1.23 2.11 16 25 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.54 7.44 -2.39 -0.02 1.52 16 28 H 0.07 2.67 4.79 -2.39 -0.01 2.66 16 29 H 0.09 4.24 5.55 -2.39 -0.01 4.23 16 30 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 31 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 32 H 0.09 3.27 6.51 -2.39 -0.02 3.25 16 33 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.11 3.27 8.06 -2.91 -0.02 3.24 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.06 1.59 8.09 -2.39 -0.02 1.57 16 Total: -1.00 -72.44 333.68 6.09 -66.34 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 1.02 Total: 22.76 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.37 Total: -7.25 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.35 Total: -72.03 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.98 Total: -54.35 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -72.44 6.09 -66.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294467847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.186 kcal (2) G-P(sol) polarization free energy of solvation -72.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds