Wall clock time and date at job start Mon Mar 30 2020 01:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99974 * 2 1 4 4 H 1.08994 * 109.47002 * 30.00223 * 3 2 1 5 5 C 1.53001 * 109.46990 * 150.00529 * 3 2 1 6 6 C 1.50707 * 109.46534 * 293.76358 * 5 3 2 7 7 C 1.38236 * 119.99790 * 269.72353 * 6 5 3 8 8 C 1.38236 * 119.99839 * 179.76893 * 7 6 5 9 9 C 1.38240 * 119.99776 * 0.51178 * 8 7 6 10 10 C 1.38230 * 120.00114 * 359.74673 * 9 8 7 11 11 C 1.38234 * 120.00163 * 90.00688 * 6 5 3 12 12 C 1.50699 * 109.47031 * 270.00220 * 3 2 1 13 13 O 1.21280 * 120.00203 * 344.28429 * 12 3 2 14 14 N 1.34776 * 119.99964 * 164.28243 * 12 3 2 15 15 C 1.46499 * 119.99935 * 5.68211 * 14 12 3 16 16 C 1.46501 * 119.99993 * 185.67842 * 14 12 3 17 17 C 1.50701 * 109.47073 * 270.00084 * 16 14 12 18 18 H 1.08003 * 119.99971 * 0.02562 * 17 16 14 19 19 C 1.37879 * 120.00061 * 180.02562 * 17 16 14 20 20 N 1.31508 * 119.99993 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99882 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46919 * 90.00242 * 21 19 17 23 23 H 1.48495 * 109.47257 * 210.00320 * 21 19 17 24 24 H 1.48498 * 109.47102 * 330.00662 * 21 19 17 25 25 H 1.08996 * 109.47359 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46730 * 299.99919 * 1 2 3 27 27 H 1.08997 * 109.47494 * 59.99311 * 1 2 3 28 28 H 1.08995 * 109.47091 * 53.75782 * 5 3 2 29 29 H 1.08995 * 109.47026 * 173.76827 * 5 3 2 30 30 H 1.07997 * 119.99693 * 0.02562 * 7 6 5 31 31 H 1.08000 * 120.00050 * 180.22937 * 8 7 6 32 32 H 1.07996 * 119.99665 * 179.72308 * 9 8 7 33 33 H 1.07995 * 120.00030 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.00024 * 359.97438 * 11 6 5 35 35 H 1.09003 * 109.46951 * 272.88753 * 15 14 12 36 36 H 1.08997 * 109.47069 * 32.88302 * 15 14 12 37 37 H 1.08998 * 109.47237 * 152.88304 * 15 14 12 38 38 H 1.08994 * 109.47154 * 30.00266 * 16 14 12 39 39 H 1.08999 * 109.46740 * 150.00527 * 16 14 12 40 40 H 0.97005 * 120.00020 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3590 1.2632 0.7211 6 6 3.1392 0.9534 2.1795 7 6 2.9550 1.9820 3.0845 8 6 2.7487 1.6976 4.4215 9 6 2.7370 0.3850 4.8551 10 6 2.9266 -0.6433 3.9510 11 6 3.1276 -0.3591 2.6132 12 6 2.2145 1.7644 -1.4208 13 8 2.1689 0.9625 -2.3296 14 7 2.4479 3.0659 -1.6816 15 6 2.6268 4.0134 -0.5787 16 6 2.5226 3.5332 -3.0681 17 6 3.9464 3.4408 -3.5532 18 1 4.7183 3.0705 -2.8948 19 6 4.2637 3.8288 -4.8377 20 7 5.5060 3.7477 -5.2612 21 14 2.9285 4.4684 -5.9768 22 1 2.8130 5.9413 -5.8260 23 1 3.2779 4.1406 -7.3823 24 1 1.6330 3.8321 -5.6274 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 3.9850 0.4901 0.2758 29 1 3.8525 2.2303 0.6256 30 1 2.9682 3.0075 2.7463 31 1 2.6010 2.5011 5.1279 32 1 2.5803 0.1631 5.9003 33 1 2.9179 -1.6687 4.2899 34 1 3.2757 -1.1626 1.9069 35 1 1.6545 4.3924 -0.2640 36 1 3.1085 3.5090 0.2590 37 1 3.2505 4.8435 -0.9103 38 1 1.8838 2.9120 -3.6958 39 1 2.1873 4.5690 -3.1210 40 1 5.7292 4.0203 -6.1650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294550218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:29 Heat of formation + Delta-G solvation = -46.193718 kcal Electronic energy + Delta-G solvation = -21727.245378 eV Core-core repulsion = 18507.623926 eV Total energy + Delta-G solvation = -3219.621452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98550 -38.91786 -37.10133 -34.95821 -33.47940 -32.44402 -30.92936 -29.72640 -28.16197 -26.26390 -26.13593 -24.30393 -22.59251 -22.06710 -21.03315 -18.81967 -17.13069 -16.89055 -16.81958 -16.37818 -15.54662 -15.09797 -14.93442 -14.91808 -14.48420 -14.09153 -13.75750 -13.45913 -13.19410 -12.99199 -12.73334 -12.54422 -12.38121 -12.13257 -11.83307 -11.64781 -11.42967 -11.12059 -11.10384 -11.00330 -10.71785 -10.51046 -10.18866 -10.10675 -9.53271 -8.97498 -8.88705 -8.59504 -8.54080 -7.72887 -6.08181 -4.06828 1.28673 1.36798 3.22261 3.26227 3.34485 3.38729 3.56443 3.78024 4.01525 4.39740 4.66888 4.80385 4.93113 5.02788 5.04558 5.15433 5.18950 5.26087 5.32348 5.40269 5.43552 5.54183 5.55992 5.71667 5.75644 5.77294 5.88221 6.01947 6.04142 6.23771 6.40611 6.46017 6.61538 6.62745 6.92439 6.96432 7.14086 7.32947 7.60880 8.20094 8.46942 8.91885 8.97259 9.51865 11.05268 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027732 B = 0.004309 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.413432 B = 6496.869775 C = 6853.707353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.085 3.915 4 H 0.078 0.922 5 C -0.083 4.083 6 C -0.073 4.073 7 C -0.119 4.119 8 C -0.123 4.123 9 C -0.128 4.128 10 C -0.123 4.123 11 C -0.098 4.098 12 C 0.482 3.518 13 O -0.519 6.519 14 N -0.597 5.597 15 C 0.071 3.929 16 C 0.216 3.784 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.265 1.265 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 -2.909 19.849 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.023 3.977 4 H 0.096 0.904 5 C -0.120 4.120 6 C -0.073 4.073 7 C -0.137 4.137 8 C -0.141 4.141 9 C -0.146 4.146 10 C -0.141 4.141 11 C -0.116 4.116 12 C 0.267 3.733 13 O -0.394 6.394 14 N -0.331 5.331 15 C -0.073 4.073 16 C 0.095 3.905 17 C -0.566 4.566 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.701 3.299 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.189 1.189 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.439 -3.481 19.179 21.241 hybrid contribution -0.727 0.694 -0.688 1.218 sum -9.166 -2.787 18.491 20.826 Atomic orbital electron populations 1.22787 0.81207 1.02774 0.99689 1.87961 1.19500 1.25262 1.94487 1.22024 0.95995 0.86411 0.93270 0.90414 1.20833 0.95540 1.04709 0.90931 1.19785 0.99222 0.93554 0.94777 1.21097 1.00473 0.98909 0.93252 1.21088 1.00678 0.96588 0.95719 1.21114 1.01007 0.93051 0.99396 1.21148 1.00369 0.99081 0.93468 1.21138 0.98536 0.96344 0.95597 1.20990 0.78482 0.82681 0.91108 1.90691 1.49632 1.52313 1.46735 1.47891 1.69756 1.07037 1.08435 1.21926 1.00626 0.94548 0.90160 1.19675 0.98641 0.94271 0.77875 1.21322 0.92519 1.43673 0.99085 0.90691 1.24859 0.95325 0.95221 0.97624 1.69895 1.17657 1.47967 1.18023 0.86868 0.82917 0.79328 0.80741 1.20102 1.20913 1.18941 0.89524 0.94342 0.93915 0.89046 0.88158 0.85993 0.86267 0.86479 0.86286 0.85672 0.93658 0.91658 0.90142 0.94357 0.95605 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.81 101.05 1.09 1.51 16 2 O -0.36 -5.78 9.48 -54.63 -0.52 -6.30 16 3 C 0.08 1.33 1.71 -27.88 -0.05 1.28 16 4 H 0.08 1.03 7.33 -51.93 -0.38 0.65 16 5 C -0.08 -1.17 4.72 -27.88 -0.13 -1.30 16 6 C -0.07 -0.90 4.98 -104.62 -0.52 -1.42 16 7 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 8 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 9 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 10 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 11 C -0.10 -1.17 9.44 -39.58 -0.37 -1.54 16 12 C 0.48 10.06 6.93 -10.99 -0.08 9.99 16 13 O -0.52 -13.39 16.21 -13.84 -0.22 -13.61 16 14 N -0.60 -12.24 2.86 -182.96 -0.52 -12.77 16 15 C 0.07 1.05 9.82 59.85 0.59 1.64 16 16 C 0.22 5.29 4.17 -5.19 -0.02 5.27 16 17 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 18 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 21 Si 0.87 21.59 27.47 -169.99 -4.67 16.93 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 29 H 0.10 1.33 5.40 -51.93 -0.28 1.05 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.81 4.37 -51.93 -0.23 0.58 16 37 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 38 H 0.04 1.02 6.57 -51.93 -0.34 0.68 16 39 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -35.33 335.03 -7.47 -42.80 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.85 Total: -0.48 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.51 Total: -4.60 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.25 Total: -39.79 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.74 Total: -19.91 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.33 -7.47 -42.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294550218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.391 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds