Wall clock time and date at job start Mon Mar 30 2020 02:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99937 * 2 1 4 4 H 1.08996 * 109.47812 * 29.99533 * 3 2 1 5 5 C 1.53004 * 109.47336 * 149.99950 * 3 2 1 6 6 C 1.50695 * 109.46921 * 294.99528 * 5 3 2 7 7 C 1.38229 * 120.00304 * 269.72663 * 6 5 3 8 8 C 1.38238 * 120.00131 * 179.76705 * 7 6 5 9 9 C 1.38236 * 119.99835 * 0.50399 * 8 7 6 10 10 C 1.38231 * 119.99906 * 359.75117 * 9 8 7 11 11 C 1.38236 * 120.00085 * 359.97438 * 10 9 8 12 12 C 1.50706 * 109.47069 * 269.99803 * 3 2 1 13 13 O 1.21281 * 119.99699 * 354.99919 * 12 3 2 14 14 N 1.34773 * 120.00080 * 175.00410 * 12 3 2 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 3 16 16 C 1.52998 * 109.47237 * 179.72043 * 15 14 12 17 17 C 1.50696 * 109.46969 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00408 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99883 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47112 * 89.99781 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00049 * 21 19 17 24 24 H 1.48494 * 109.47201 * 330.00023 * 21 19 17 25 25 H 1.09002 * 109.47414 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47277 * 300.00634 * 1 2 3 27 27 H 1.09001 * 109.47359 * 60.00007 * 1 2 3 28 28 H 1.08996 * 109.46820 * 54.99920 * 5 3 2 29 29 H 1.09001 * 109.47200 * 175.00014 * 5 3 2 30 30 H 1.08001 * 120.00308 * 359.97438 * 7 6 5 31 31 H 1.08000 * 120.00331 * 180.22890 * 8 7 6 32 32 H 1.07997 * 119.99955 * 179.71995 * 9 8 7 33 33 H 1.08002 * 119.99790 * 179.97438 * 10 9 8 34 34 H 1.07996 * 119.99731 * 179.97438 * 11 10 9 35 35 H 0.97005 * 120.00161 * 359.72088 * 14 12 3 36 36 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 37 37 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 38 38 H 1.09000 * 109.46986 * 299.99958 * 16 15 14 39 39 H 1.09002 * 109.46857 * 60.00093 * 16 15 14 40 40 H 0.96999 * 119.99905 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 3.3589 1.2633 0.7213 6 6 3.1415 0.9238 2.1733 7 6 2.9463 1.9330 3.0974 8 6 2.7422 1.6213 4.4286 9 6 2.7436 0.3008 4.8374 10 6 2.9441 -0.7083 3.9141 11 6 3.1426 -0.3968 2.5820 12 6 2.2145 1.7643 -1.4209 13 8 1.9792 1.0105 -2.3413 14 7 2.6589 3.0123 -1.6687 15 6 2.8570 3.4586 -3.0500 16 6 3.3559 4.9049 -3.0521 17 6 3.5603 5.3637 -4.4729 18 1 3.3545 4.6911 -5.2924 19 6 4.0100 6.6422 -4.7266 20 7 4.2611 7.4610 -3.7286 21 14 4.2627 7.2111 -6.4878 22 1 3.0069 7.8188 -6.9967 23 1 5.3530 8.2184 -6.5310 24 1 4.6290 6.0485 -7.3358 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.9930 0.5052 0.2618 29 1 3.8426 2.2370 0.6443 30 1 2.9500 2.9650 2.7789 31 1 2.5859 2.4097 5.1501 32 1 2.5886 0.0575 5.8781 33 1 2.9456 -1.7400 4.2335 34 1 3.2996 -1.1852 1.8607 35 1 2.8434 3.6166 -0.9326 36 1 3.5939 2.8192 -3.5361 37 1 1.9121 3.3993 -3.5900 38 1 2.6190 5.5442 -2.5659 39 1 4.3009 4.9640 -2.5121 40 1 4.5778 8.3603 -3.9071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294891594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:32 Heat of formation + Delta-G solvation = -74.334289 kcal Electronic energy + Delta-G solvation = -20813.505288 eV Core-core repulsion = 17592.663569 eV Total energy + Delta-G solvation = -3220.841718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05728 -39.06163 -37.26699 -34.85221 -33.64929 -32.76873 -31.00735 -30.21846 -28.89780 -26.41529 -25.30333 -23.88750 -22.68097 -21.26960 -21.02040 -20.09738 -17.40516 -16.93578 -16.83247 -16.32996 -15.69178 -15.11374 -15.01296 -14.82014 -14.56640 -14.51238 -14.12282 -13.53961 -13.40662 -13.14087 -12.83306 -12.71753 -12.34300 -12.29583 -11.80623 -11.30479 -11.22420 -11.18331 -11.05861 -10.99496 -10.66123 -10.45513 -10.35107 -9.72981 -9.39210 -9.10067 -9.02179 -8.73249 -8.57393 -8.38280 -6.11536 -4.14348 1.19505 1.28725 2.89404 3.28140 3.33924 3.36452 3.41866 3.68470 3.83172 4.39826 4.57899 4.73216 4.85807 4.91730 4.97720 5.01016 5.13779 5.25602 5.25689 5.30758 5.38787 5.44727 5.55600 5.66348 5.74080 5.93540 5.94309 6.29749 6.31901 6.33145 6.38170 6.51173 6.70741 6.85698 6.87556 6.99545 7.49022 7.58680 7.86621 7.96157 8.25502 8.60195 8.91571 9.50644 11.00027 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.003267 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.388861 B = 8568.414534 C = 9355.053514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.081 3.919 4 H 0.084 0.916 5 C -0.076 4.076 6 C -0.077 4.077 7 C -0.118 4.118 8 C -0.122 4.122 9 C -0.126 4.126 10 C -0.123 4.123 11 C -0.098 4.098 12 C 0.481 3.519 13 O -0.534 6.534 14 N -0.720 5.720 15 C 0.121 3.879 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.397 0.603 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -12.602 17.526 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.019 3.981 4 H 0.102 0.898 5 C -0.113 4.113 6 C -0.078 4.078 7 C -0.136 4.136 8 C -0.140 4.140 9 C -0.144 4.144 10 C -0.141 4.141 11 C -0.116 4.116 12 C 0.266 3.734 13 O -0.411 6.411 14 N -0.372 5.372 15 C -0.001 4.001 16 C -0.024 4.024 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.230 0.770 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.380 -13.151 16.873 21.836 hybrid contribution -0.007 1.001 -0.568 1.151 sum -4.386 -12.150 16.305 20.802 Atomic orbital electron populations 1.22810 0.80859 1.02896 0.99923 1.87948 1.19846 1.24917 1.94440 1.22036 0.96379 0.86979 0.92719 0.89789 1.20687 0.95128 1.04211 0.91313 1.19726 0.99772 0.93598 0.94661 1.21127 1.00145 0.99125 0.93177 1.21117 1.00495 0.96493 0.95924 1.21137 1.00712 0.93106 0.99420 1.21151 1.00394 0.99189 0.93399 1.21105 0.98670 0.96056 0.95752 1.21223 0.78138 0.82469 0.91614 1.90686 1.50461 1.53932 1.45989 1.46394 1.66415 1.13510 1.10898 1.21738 1.00317 0.98498 0.79548 1.19321 0.96696 0.88233 0.98194 1.21052 1.44964 0.98158 0.91915 0.92263 1.24993 0.95202 0.96656 0.97407 1.69948 1.45452 1.07038 1.30847 0.86512 0.77876 0.78565 0.84616 1.20561 1.21144 1.19720 0.89480 0.94219 0.93636 0.89261 0.88711 0.85836 0.86170 0.86408 0.86262 0.85755 0.76982 0.92490 0.92622 0.95973 0.95875 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.81 101.05 1.09 1.46 16 2 O -0.35 -4.96 9.38 -55.09 -0.52 -5.48 16 3 C 0.08 1.05 2.50 -27.88 -0.07 0.98 16 4 H 0.08 0.94 7.79 -51.93 -0.40 0.54 16 5 C -0.08 -0.86 5.03 -27.88 -0.14 -1.00 16 6 C -0.08 -0.83 4.97 -104.63 -0.52 -1.35 16 7 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 8 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 9 C -0.13 -1.10 10.05 -39.58 -0.40 -1.49 16 10 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 11 C -0.10 -1.02 9.40 -39.58 -0.37 -1.40 16 12 C 0.48 8.21 7.13 -10.98 -0.08 8.13 16 13 O -0.53 -11.37 16.51 -14.30 -0.24 -11.60 16 14 N -0.72 -12.26 5.45 -60.29 -0.33 -12.59 16 15 C 0.12 2.56 5.61 -4.04 -0.02 2.53 16 16 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 17 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 21 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 29 H 0.09 0.95 7.72 -51.93 -0.40 0.55 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.40 5.68 8.19 -40.82 -0.33 5.34 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -32.61 345.49 -8.57 -41.18 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.17 Total: 1.83 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.24 Total: -9.67 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.41 Total: -37.73 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.75 Total: -17.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.61 -8.57 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294891594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.150 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds