Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99937 * 2 1 4 4 H 1.08996 * 109.47812 * 29.99533 * 3 2 1 5 5 C 1.53004 * 109.47336 * 149.99950 * 3 2 1 6 6 C 1.50695 * 109.46921 * 294.99528 * 5 3 2 7 7 C 1.38229 * 120.00304 * 269.72663 * 6 5 3 8 8 C 1.38238 * 120.00131 * 179.76705 * 7 6 5 9 9 C 1.38236 * 119.99835 * 0.50399 * 8 7 6 10 10 C 1.38231 * 119.99906 * 359.75117 * 9 8 7 11 11 C 1.38236 * 120.00085 * 359.97438 * 10 9 8 12 12 C 1.50706 * 109.47069 * 269.99803 * 3 2 1 13 13 O 1.21281 * 119.99699 * 354.99919 * 12 3 2 14 14 N 1.34773 * 120.00080 * 175.00410 * 12 3 2 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 3 16 16 C 1.52998 * 109.47237 * 179.72043 * 15 14 12 17 17 C 1.50696 * 109.46969 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00408 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99883 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47112 * 89.99781 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00049 * 21 19 17 24 24 H 1.48494 * 109.47201 * 330.00023 * 21 19 17 25 25 H 1.09002 * 109.47414 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47277 * 300.00634 * 1 2 3 27 27 H 1.09001 * 109.47359 * 60.00007 * 1 2 3 28 28 H 1.08996 * 109.46820 * 54.99920 * 5 3 2 29 29 H 1.09001 * 109.47200 * 175.00014 * 5 3 2 30 30 H 1.08001 * 120.00308 * 359.97438 * 7 6 5 31 31 H 1.08000 * 120.00331 * 180.22890 * 8 7 6 32 32 H 1.07997 * 119.99955 * 179.71995 * 9 8 7 33 33 H 1.08002 * 119.99790 * 179.97438 * 10 9 8 34 34 H 1.07996 * 119.99731 * 179.97438 * 11 10 9 35 35 H 0.97005 * 120.00161 * 359.72088 * 14 12 3 36 36 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 37 37 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 38 38 H 1.09000 * 109.46986 * 299.99958 * 16 15 14 39 39 H 1.09002 * 109.46857 * 60.00093 * 16 15 14 40 40 H 0.96999 * 119.99905 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 3.3589 1.2633 0.7213 6 6 3.1415 0.9238 2.1733 7 6 2.9463 1.9330 3.0974 8 6 2.7422 1.6213 4.4286 9 6 2.7436 0.3008 4.8374 10 6 2.9441 -0.7083 3.9141 11 6 3.1426 -0.3968 2.5820 12 6 2.2145 1.7643 -1.4209 13 8 1.9792 1.0105 -2.3413 14 7 2.6589 3.0123 -1.6687 15 6 2.8570 3.4586 -3.0500 16 6 3.3559 4.9049 -3.0521 17 6 3.5603 5.3637 -4.4729 18 1 3.3545 4.6911 -5.2924 19 6 4.0100 6.6422 -4.7266 20 7 4.2611 7.4610 -3.7286 21 14 4.2627 7.2111 -6.4878 22 1 3.0069 7.8188 -6.9967 23 1 5.3530 8.2184 -6.5310 24 1 4.6290 6.0485 -7.3358 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.9930 0.5052 0.2618 29 1 3.8426 2.2370 0.6443 30 1 2.9500 2.9650 2.7789 31 1 2.5859 2.4097 5.1501 32 1 2.5886 0.0575 5.8781 33 1 2.9456 -1.7400 4.2335 34 1 3.2996 -1.1852 1.8607 35 1 2.8434 3.6166 -0.9326 36 1 3.5939 2.8192 -3.5361 37 1 1.9121 3.3993 -3.5900 38 1 2.6190 5.5442 -2.5659 39 1 4.3009 4.9640 -2.5121 40 1 4.5778 8.3603 -3.9071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294891594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = -93.776247 kcal Electronic energy + Delta-G solvation = -20814.348354 eV Core-core repulsion = 17592.663569 eV Total energy + Delta-G solvation = -3221.684785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24427 -39.96201 -38.41675 -36.55886 -34.98205 -34.29719 -31.79615 -31.68633 -30.11082 -27.40610 -26.87875 -25.25181 -23.37353 -22.89837 -22.05900 -21.43166 -18.77440 -18.39873 -17.91267 -17.63067 -16.78366 -16.50291 -16.30985 -15.92486 -15.82609 -15.77430 -15.42970 -14.74906 -14.43648 -14.28636 -14.18541 -13.76391 -13.64454 -13.27795 -13.14924 -12.95685 -12.71457 -12.54794 -12.26271 -12.14846 -11.98188 -11.76460 -11.69985 -11.57015 -11.39529 -10.60668 -10.36912 -10.05957 -9.73475 -9.55019 -8.24489 -6.34612 0.47347 0.58684 1.41601 1.41860 1.53259 1.53839 2.10167 2.42235 2.76856 2.94942 3.10368 3.58899 3.86812 3.99584 4.03711 4.11443 4.25163 4.37767 4.43985 4.45935 4.48640 4.48946 4.53883 4.70407 4.79078 4.84322 4.85465 4.89452 5.19892 5.25433 5.25959 5.47410 5.58265 5.64641 5.70224 5.76828 5.78213 5.98877 6.16040 6.19652 6.59202 6.78326 7.21891 7.34611 8.87144 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.003267 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.388861 B = 8568.414534 C = 9355.053514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.092 3.908 4 H 0.110 0.890 5 C -0.070 4.070 6 C -0.089 4.089 7 C -0.126 4.126 8 C -0.128 4.128 9 C -0.128 4.128 10 C -0.130 4.130 11 C -0.113 4.113 12 C 0.482 3.518 13 O -0.579 6.579 14 N -0.711 5.711 15 C 0.140 3.860 16 C 0.024 3.976 17 C -0.548 4.548 18 H 0.056 0.944 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.963 3.037 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.268 1.268 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.118 0.882 35 H 0.412 0.588 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.011 0.989 39 H 0.012 0.988 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -12.506 18.832 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.288 6.288 3 C 0.030 3.970 4 H 0.127 0.873 5 C -0.108 4.108 6 C -0.090 4.090 7 C -0.144 4.144 8 C -0.146 4.146 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.131 4.131 12 C 0.268 3.732 13 O -0.459 6.459 14 N -0.364 5.364 15 C 0.016 3.984 16 C -0.014 4.014 17 C -0.587 4.587 18 H 0.075 0.925 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.136 0.864 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.684 -13.053 18.214 22.892 hybrid contribution 0.066 0.934 -0.906 1.303 sum -4.618 -12.119 17.308 21.627 Atomic orbital electron populations 1.22973 0.79691 1.04128 1.00135 1.87944 1.21251 1.25377 1.94226 1.22055 0.97935 0.87239 0.89774 0.87272 1.20648 0.93842 1.04509 0.91799 1.19672 1.01069 0.94052 0.94163 1.21340 0.99983 0.99546 0.93492 1.21431 0.99817 0.97299 0.96019 1.21470 0.99676 0.92927 1.00497 1.21398 0.99977 1.00408 0.92970 1.21195 0.99474 0.95997 0.96454 1.22035 0.76523 0.81524 0.93090 1.90662 1.52332 1.55036 1.47862 1.46183 1.66353 1.14142 1.09738 1.21237 0.99118 0.96343 0.81702 1.19126 0.95758 0.89825 0.96643 1.21466 1.45265 0.98658 0.93292 0.92524 1.25832 0.94771 0.96737 1.01650 1.70041 1.45992 1.07454 1.32899 0.85478 0.78084 0.78163 0.79534 1.19777 1.20442 1.19231 0.87940 0.92028 0.95245 0.90485 0.87543 0.84573 0.84170 0.84169 0.84619 0.86374 0.75173 0.93695 0.93724 0.97101 0.97011 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.81 113.37 1.23 1.81 16 2 O -0.37 -10.10 9.38 -129.99 -1.22 -11.32 16 3 C 0.09 2.30 2.50 29.85 0.07 2.38 16 4 H 0.11 2.21 7.79 -2.39 -0.02 2.19 16 5 C -0.07 -1.53 5.03 29.85 0.15 -1.38 16 6 C -0.09 -1.79 4.97 -19.87 -0.10 -1.89 16 7 C -0.13 -2.18 9.70 22.27 0.22 -1.97 16 8 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 9 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 10 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 11 C -0.11 -2.26 9.40 22.27 0.21 -2.05 16 12 C 0.48 16.38 7.13 87.66 0.63 17.01 16 13 O -0.58 -25.07 16.51 15.96 0.26 -24.81 16 14 N -0.71 -24.10 5.45 -463.05 -2.53 -26.62 16 15 C 0.14 5.98 5.61 86.38 0.48 6.47 16 16 C 0.02 1.19 5.09 29.85 0.15 1.34 16 17 C -0.55 -30.49 9.11 25.60 0.23 -30.25 16 18 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 19 C 0.01 0.51 5.46 84.66 0.46 0.97 16 20 N -0.92 -53.52 13.29 21.45 0.28 -53.24 16 21 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.06 8.09 -2.38 -0.02 1.04 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 29 H 0.11 2.01 7.72 -2.39 -0.02 1.99 16 30 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.41 11.45 8.19 -92.70 -0.76 10.69 16 36 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 2.00 8.14 -2.39 -0.02 1.99 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -69.71 345.49 3.49 -66.22 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.26 Total: 17.25 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.41 Total: -12.91 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -2.24 Total: -79.86 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.96 Total: -36.13 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -69.71 3.49 -66.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294891594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.558 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds