Wall clock time and date at job start Mon Mar 30 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35977 * 117.00319 * 2 1 4 4 C 1.38724 * 120.06912 * 359.97438 * 3 2 1 5 5 C 1.37938 * 119.90190 * 179.97438 * 4 3 2 6 6 C 1.39123 * 120.29730 * 0.02562 * 5 4 3 7 7 C 1.38349 * 119.78120 * 0.14942 * 6 5 4 8 8 C 1.38506 * 119.88444 * 359.78487 * 7 6 5 9 9 C 1.50781 * 121.41822 * 179.70872 * 7 6 5 10 10 C 1.53070 * 109.67608 * 17.80147 * 9 7 6 11 11 H 1.09001 * 109.73500 * 71.45817 * 10 9 7 12 12 N 1.46905 * 109.70115 * 192.04125 * 10 9 7 13 13 C 1.46901 * 110.99870 * 203.82847 * 12 10 9 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00107 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99714 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99765 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47110 * 90.00207 * 19 17 15 21 21 H 1.48501 * 109.47137 * 210.00199 * 19 17 15 22 22 H 1.48496 * 109.47323 * 330.00240 * 19 17 15 23 23 C 1.53419 * 108.28560 * 311.73758 * 10 9 7 24 24 O 1.35951 * 118.43766 * 180.20259 * 6 5 4 25 25 H 1.08998 * 109.46800 * 300.00051 * 1 2 3 26 26 H 1.08996 * 109.46605 * 59.99526 * 1 2 3 27 27 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.04471 * 359.95689 * 4 3 2 29 29 H 1.08007 * 119.85148 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.86468 * 180.14524 * 8 7 6 31 31 H 1.09005 * 109.43356 * 257.74187 * 9 7 6 32 32 H 1.08994 * 109.44197 * 137.87088 * 9 7 6 33 33 H 1.00901 * 110.99869 * 79.87559 * 12 10 9 34 34 H 1.09004 * 109.47031 * 299.99620 * 13 12 10 35 35 H 1.08995 * 109.47111 * 59.99900 * 13 12 10 36 36 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 37 37 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 38 38 H 0.97007 * 120.00038 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.68177 * 184.46821 * 23 10 9 40 40 H 1.08994 * 109.67812 * 304.99162 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2115 0.0000 4 6 1.2924 2.3759 -0.0005 5 6 1.9223 3.6031 0.0000 6 6 3.3114 3.6790 0.0005 7 6 4.0631 2.5175 -0.0026 8 6 3.4298 1.2857 -0.0017 9 6 5.5704 2.5567 -0.0087 10 6 6.0517 3.9419 0.4302 11 1 5.8692 4.0742 1.4966 12 7 7.4879 4.0779 0.1530 13 6 8.0985 5.0911 1.0240 14 6 9.5908 5.2045 0.7061 15 6 10.2170 6.2444 1.5992 16 1 9.6112 6.7719 2.3210 17 6 11.5635 6.5222 1.4948 18 7 12.3011 5.8801 0.6155 19 14 12.3396 7.8116 2.6013 20 1 12.8228 7.1673 3.8489 21 1 13.4829 8.4453 1.8967 22 1 11.3301 8.8474 2.9381 23 6 5.2697 4.9969 -0.3632 24 8 3.8927 4.9080 0.0053 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2137 2.3216 -0.0017 29 1 1.3344 4.5091 0.0000 30 1 4.0168 0.3792 -0.0018 31 1 5.9345 2.3480 -1.0147 32 1 5.9556 1.8041 0.6792 33 1 7.6497 4.2923 -0.8196 34 1 7.6170 6.0542 0.8540 35 1 7.9697 4.7995 2.0663 36 1 10.0725 4.2416 0.8757 37 1 9.7191 5.4964 -0.3362 38 1 13.2484 6.0759 0.5418 39 1 5.6497 5.9906 -0.1263 40 1 5.3775 4.8074 -1.4311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296351656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:01 Heat of formation + Delta-G solvation = -59.423665 kcal Electronic energy + Delta-G solvation = -20720.287838 eV Core-core repulsion = 17500.092693 eV Total energy + Delta-G solvation = -3220.195145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91123 -39.44065 -36.79280 -36.17247 -33.64105 -32.43415 -30.42145 -29.99522 -27.98783 -27.17681 -25.69236 -24.17775 -22.82521 -22.25042 -20.79804 -19.93052 -17.96368 -17.74660 -16.92825 -16.37266 -15.97680 -15.59613 -15.19928 -14.78634 -14.56083 -14.39437 -13.88579 -13.71954 -13.43071 -13.23344 -13.13547 -12.97663 -12.58369 -12.24664 -11.98482 -11.78928 -11.33677 -11.13761 -10.95351 -10.90981 -10.73948 -10.55393 -10.47627 -10.03716 -9.43517 -9.18491 -8.97003 -8.38538 -8.01568 -7.77443 -6.02411 -4.05256 1.08886 1.32918 3.04019 3.28757 3.31076 3.37290 3.40312 3.57909 4.33629 4.48452 4.58602 4.67385 4.72126 4.82751 4.85744 4.86244 4.96890 5.16627 5.17974 5.26116 5.33758 5.49093 5.53400 5.56728 5.75662 5.82574 6.01689 6.02788 6.15631 6.25304 6.31993 6.34216 6.42675 6.89849 7.12437 7.30199 7.46693 7.65481 7.73191 7.85798 8.02789 8.39176 9.01811 9.58852 11.08935 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047422 B = 0.002760 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.305759 B =10142.199426 C =10441.893807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.092 3.908 4 C -0.178 4.178 5 C -0.111 4.111 6 C 0.098 3.902 7 C -0.111 4.111 8 C -0.116 4.116 9 C -0.069 4.069 10 C 0.054 3.946 11 H 0.089 0.911 12 N -0.677 5.677 13 C 0.064 3.936 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.032 3.968 24 O -0.316 6.316 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.339 0.661 34 H 0.018 0.982 35 H 0.061 0.939 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.261 0.739 39 H 0.108 0.892 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.521 -8.861 -3.327 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.047 3.953 4 C -0.197 4.197 5 C -0.130 4.130 6 C 0.053 3.947 7 C -0.113 4.113 8 C -0.135 4.135 9 C -0.106 4.106 10 C -0.057 4.057 11 H 0.108 0.892 12 N -0.308 5.308 13 C -0.064 4.064 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.045 4.045 24 O -0.229 6.229 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.157 0.843 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.154 -9.396 -2.936 25.160 hybrid contribution 0.067 1.568 0.118 1.574 sum -23.087 -7.828 -2.818 24.540 Atomic orbital electron populations 1.23016 0.78707 1.03747 1.01204 1.86071 1.21064 1.26802 1.89392 1.18795 0.92172 0.84139 1.00156 1.20959 0.99837 0.91494 1.07378 1.20340 0.91585 0.97926 1.03159 1.18642 0.91778 0.84240 1.00082 1.19780 0.96344 0.91718 1.03431 1.20142 0.91256 0.97648 1.04437 1.20533 0.88604 0.98208 1.03299 1.22215 0.89255 0.93729 1.00522 0.89250 1.60640 1.08513 1.51847 1.09809 1.22261 0.98226 0.90108 0.95817 1.19075 0.87850 0.97525 0.96798 1.21158 0.93836 1.21294 1.19875 0.92717 1.25003 0.97367 0.96425 0.95566 1.69969 1.06591 1.41734 1.34888 0.86578 0.78931 0.81723 0.80667 1.20604 1.21211 1.19916 1.23902 0.79099 1.02227 0.99299 1.85995 1.26667 1.26085 1.84112 0.92778 0.92819 0.88404 0.85088 0.85051 0.84830 0.89812 0.89106 0.84263 0.96350 0.92046 0.95544 0.96737 0.92950 0.87447 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.82 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.50 -19.67 -0.21 -3.56 16 3 C 0.09 1.05 6.68 -39.29 -0.26 0.79 16 4 C -0.18 -1.83 9.03 -39.51 -0.36 -2.18 16 5 C -0.11 -1.28 9.93 -39.36 -0.39 -1.67 16 6 C 0.10 1.30 6.47 -39.21 -0.25 1.05 16 7 C -0.11 -1.42 5.75 -104.44 -0.60 -2.02 16 8 C -0.12 -1.39 9.60 -39.37 -0.38 -1.77 16 9 C -0.07 -0.88 5.47 -27.81 -0.15 -1.03 16 10 C 0.05 0.77 2.69 -67.46 -0.18 0.59 16 11 H 0.09 1.38 7.82 -51.93 -0.41 0.97 16 12 N -0.68 -11.33 6.27 -106.45 -0.67 -11.99 16 13 C 0.06 1.29 5.43 -3.82 -0.02 1.27 16 14 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 15 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.03 0.42 6.31 37.37 0.24 0.66 16 24 O -0.32 -4.47 10.27 -19.59 -0.20 -4.68 16 25 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 26 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.13 0.98 6.31 -52.49 -0.33 0.65 16 29 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.34 5.36 8.49 -39.29 -0.33 5.03 16 34 H 0.02 0.36 7.41 -51.93 -0.38 -0.03 16 35 H 0.06 1.26 8.06 -51.93 -0.42 0.85 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.11 1.43 7.41 -51.93 -0.38 1.05 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -31.07 330.02 -8.29 -39.36 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.98 Total: 1.41 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.93 Total: -16.09 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.07 Total: -37.96 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.41 Total: -8.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.07 -8.29 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296351656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.064 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds