Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99513 * 2 1 4 4 O 1.21283 * 119.99449 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.00338 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47263 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.47263 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99727 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00370 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99499 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00497 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46911 * 89.99745 * 11 9 7 13 13 H 1.48491 * 109.47452 * 209.99706 * 11 9 7 14 14 H 1.48500 * 109.46860 * 330.00026 * 11 9 7 15 15 C 1.46499 * 119.99870 * 180.02562 * 2 1 3 16 16 H 1.08997 * 109.46793 * 236.05225 * 15 2 1 17 17 C 1.52995 * 109.47380 * 356.05565 * 15 2 1 18 18 O 1.42907 * 109.46944 * 67.39448 * 17 15 2 19 19 C 1.50706 * 109.46937 * 116.06198 * 15 2 1 20 20 C 1.38238 * 119.99503 * 323.49813 * 19 15 2 21 21 C 1.38237 * 119.99383 * 179.78928 * 20 19 15 22 22 C 1.38236 * 120.00224 * 0.44946 * 21 20 19 23 23 C 1.38237 * 119.99941 * 359.80027 * 22 21 20 24 24 C 1.38231 * 119.99966 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47220 * 264.52601 * 1 2 3 26 26 H 1.08996 * 109.47827 * 24.52806 * 1 2 3 27 27 H 1.09008 * 109.47128 * 144.52938 * 1 2 3 28 28 H 1.09005 * 109.46933 * 299.99911 * 5 3 2 29 29 H 1.08999 * 109.47638 * 59.99733 * 5 3 2 30 30 H 1.09005 * 109.47008 * 299.99785 * 6 5 3 31 31 H 1.09004 * 109.47032 * 60.00043 * 6 5 3 32 32 H 0.97002 * 119.99897 * 179.97438 * 10 9 7 33 33 H 1.08991 * 109.47483 * 307.39476 * 17 15 2 34 34 H 1.09004 * 109.46905 * 187.39096 * 17 15 2 35 35 H 0.96700 * 113.99604 * 179.97438 * 18 17 15 36 36 H 1.07998 * 120.00267 * 0.02562 * 20 19 15 37 37 H 1.07995 * 119.99915 * 180.26829 * 21 20 19 38 38 H 1.07995 * 119.99993 * 179.83609 * 22 21 20 39 39 H 1.07997 * 120.00157 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00412 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 6 1.6260 4.9403 0.0010 8 1 0.5460 4.9402 0.0018 9 6 2.3152 6.1344 0.0001 10 7 3.6305 6.1344 -0.0014 11 14 1.3813 7.7521 0.0009 12 1 1.1353 8.1810 1.4012 13 1 2.1829 8.7870 -0.7001 14 1 0.0829 7.5744 -0.6977 15 6 2.1975 -1.2687 -0.0006 16 1 2.8761 -1.2968 0.8519 17 6 1.2063 -2.4300 0.0981 18 8 0.4303 -2.4970 -1.1000 19 6 2.9893 -1.3911 -1.2770 20 6 2.4667 -0.9105 -2.4632 21 6 3.1948 -1.0188 -3.6332 22 6 4.4415 -1.6160 -3.6188 23 6 4.9618 -2.1011 -2.4336 24 6 4.2357 -1.9887 -1.2627 25 1 -0.3633 -0.0980 1.0230 26 1 -0.3634 0.9349 -0.4266 27 1 -0.3634 -0.8370 -0.5964 28 1 0.7583 2.5302 -0.8892 29 1 0.7589 2.5299 0.8908 30 1 3.0068 3.5776 0.8894 31 1 3.0054 3.5775 -0.8907 32 1 4.1154 6.9745 -0.0024 33 1 0.5456 -2.2723 0.9505 34 1 1.7527 -3.3639 0.2298 35 1 -0.2205 -3.2122 -1.1076 36 1 1.4913 -0.4471 -2.4750 37 1 2.7885 -0.6395 -4.5592 38 1 5.0091 -1.7029 -4.5334 39 1 5.9355 -2.5681 -2.4224 40 1 4.6419 -2.3681 -0.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297206505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = -55.851628 kcal Electronic energy + Delta-G solvation = -21817.983226 eV Core-core repulsion = 18597.942976 eV Total energy + Delta-G solvation = -3220.040250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18663 -38.40598 -37.27068 -34.84974 -33.46645 -32.13564 -30.72390 -30.52083 -28.46272 -26.60554 -25.62881 -23.14316 -22.40526 -21.82464 -20.29912 -18.46325 -17.86013 -17.06243 -16.52271 -16.10186 -15.49192 -15.37833 -14.80282 -14.55335 -14.45210 -14.20390 -13.51786 -13.39195 -13.10840 -12.66931 -12.50438 -12.43607 -12.15665 -11.99495 -11.86204 -11.66194 -11.04671 -10.90519 -10.83184 -10.78590 -10.55301 -10.26672 -9.89391 -9.55686 -9.11607 -8.95040 -8.65056 -8.48694 -8.30017 -8.24101 -5.91940 -3.96179 1.57342 1.68043 3.29562 3.35578 3.35954 3.41829 3.44692 3.92889 4.09617 4.50484 4.71973 4.82668 5.07482 5.14055 5.18080 5.25349 5.33602 5.40383 5.42846 5.55397 5.61401 5.72303 5.76942 5.85696 6.02580 6.17879 6.27774 6.29155 6.30128 6.66238 6.71071 6.74683 6.90799 7.00149 7.23334 7.36236 7.78890 7.84177 7.92304 8.12371 8.43595 8.85477 9.12620 9.67004 11.19052 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.004491 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.512283 B = 6233.574002 C = 6938.183104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.621 5.621 3 C 0.509 3.491 4 O -0.524 6.524 5 C -0.126 4.126 6 C 0.038 3.962 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.189 3.811 16 H 0.092 0.908 17 C 0.077 3.923 18 O -0.555 6.555 19 C -0.074 4.074 20 C -0.076 4.076 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.110 4.110 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.376 0.624 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 -21.522 -2.303 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.357 5.357 3 C 0.299 3.701 4 O -0.399 6.399 5 C -0.166 4.166 6 C 0.000 4.000 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.529 5.529 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.085 3.915 16 H 0.110 0.890 17 C -0.001 4.001 18 O -0.361 6.361 19 C -0.075 4.075 20 C -0.094 4.094 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.129 4.129 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.223 0.777 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.187 -20.865 -2.447 21.639 hybrid contribution -0.788 0.515 0.220 0.967 sum -5.975 -20.350 -2.228 21.326 Atomic orbital electron populations 1.22140 0.79754 1.04735 1.01438 1.48105 1.06788 1.04800 1.76025 1.21562 0.88517 0.85361 0.74667 1.90677 1.14283 1.87150 1.47757 1.21864 1.00621 0.91981 1.02096 1.18897 0.93182 0.89389 0.98533 1.21222 0.92879 0.91040 1.51239 0.92674 1.25024 0.94806 0.99172 0.95364 1.70009 1.06049 1.26498 1.50294 0.86601 0.79786 0.83593 0.78031 1.20697 1.21241 1.19896 1.19913 0.92189 0.83472 0.95881 0.89045 1.22311 0.93202 0.97161 0.87462 1.86607 1.53930 1.56029 1.39517 1.19839 0.94541 0.98315 0.94773 1.20842 0.99357 0.97495 0.91729 1.21107 0.95193 0.99859 0.98212 1.21059 0.96025 0.99260 0.97871 1.20983 0.99513 1.01030 0.92848 1.20867 0.94077 0.99925 0.97997 0.93729 0.90757 0.88856 0.90440 0.90474 0.95934 0.95881 0.93001 0.92419 0.92292 0.77719 0.86328 0.86523 0.86623 0.86516 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 9.12 59.85 0.55 1.27 16 2 N -0.62 -9.53 2.20 -175.26 -0.39 -9.92 16 3 C 0.51 10.40 7.15 -10.99 -0.08 10.32 16 4 O -0.52 -12.88 15.28 5.55 0.08 -12.79 16 5 C -0.13 -2.69 4.11 -27.88 -0.11 -2.80 16 6 C 0.04 1.04 4.26 -27.88 -0.12 0.93 16 7 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -27.98 13.29 55.43 0.74 -27.24 16 11 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.19 2.56 2.68 -69.08 -0.18 2.38 16 16 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 17 C 0.08 0.68 6.02 37.15 0.22 0.90 16 18 O -0.56 -4.74 9.75 -35.23 -0.34 -5.09 16 19 C -0.07 -1.11 3.68 -104.62 -0.38 -1.50 16 20 C -0.08 -1.19 8.13 -39.58 -0.32 -1.52 16 21 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 22 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 23 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 24 C -0.11 -1.57 9.68 -39.58 -0.38 -1.96 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.90 6.25 -51.93 -0.32 0.58 16 27 H 0.09 0.94 4.91 -51.92 -0.26 0.68 16 28 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 29 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.06 0.43 7.52 -51.93 -0.39 0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.38 1.44 9.12 45.56 0.42 1.85 16 36 H 0.12 1.88 7.58 -52.49 -0.40 1.49 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -36.57 330.62 -7.46 -44.04 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.10 Total: 1.37 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.42 Total: -12.33 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.35 Total: -37.16 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.26 Total: -17.88 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.57 -7.46 -44.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297206505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.815 kcal (2) G-P(sol) polarization free energy of solvation -36.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds