Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99513 * 2 1 4 4 O 1.21283 * 119.99449 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.00338 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47263 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.47263 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99727 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00370 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99499 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00497 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46911 * 89.99745 * 11 9 7 13 13 H 1.48491 * 109.47452 * 209.99706 * 11 9 7 14 14 H 1.48500 * 109.46860 * 330.00026 * 11 9 7 15 15 C 1.46499 * 119.99870 * 180.02562 * 2 1 3 16 16 H 1.08997 * 109.46793 * 236.05225 * 15 2 1 17 17 C 1.52995 * 109.47380 * 356.05565 * 15 2 1 18 18 O 1.42907 * 109.46944 * 67.39448 * 17 15 2 19 19 C 1.50706 * 109.46937 * 116.06198 * 15 2 1 20 20 C 1.38238 * 119.99503 * 323.49813 * 19 15 2 21 21 C 1.38237 * 119.99383 * 179.78928 * 20 19 15 22 22 C 1.38236 * 120.00224 * 0.44946 * 21 20 19 23 23 C 1.38237 * 119.99941 * 359.80027 * 22 21 20 24 24 C 1.38231 * 119.99966 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47220 * 264.52601 * 1 2 3 26 26 H 1.08996 * 109.47827 * 24.52806 * 1 2 3 27 27 H 1.09008 * 109.47128 * 144.52938 * 1 2 3 28 28 H 1.09005 * 109.46933 * 299.99911 * 5 3 2 29 29 H 1.08999 * 109.47638 * 59.99733 * 5 3 2 30 30 H 1.09005 * 109.47008 * 299.99785 * 6 5 3 31 31 H 1.09004 * 109.47032 * 60.00043 * 6 5 3 32 32 H 0.97002 * 119.99897 * 179.97438 * 10 9 7 33 33 H 1.08991 * 109.47483 * 307.39476 * 17 15 2 34 34 H 1.09004 * 109.46905 * 187.39096 * 17 15 2 35 35 H 0.96700 * 113.99604 * 179.97438 * 18 17 15 36 36 H 1.07998 * 120.00267 * 0.02562 * 20 19 15 37 37 H 1.07995 * 119.99915 * 180.26829 * 21 20 19 38 38 H 1.07995 * 119.99993 * 179.83609 * 22 21 20 39 39 H 1.07997 * 120.00157 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00412 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 6 1.6260 4.9403 0.0010 8 1 0.5460 4.9402 0.0018 9 6 2.3152 6.1344 0.0001 10 7 3.6305 6.1344 -0.0014 11 14 1.3813 7.7521 0.0009 12 1 1.1353 8.1810 1.4012 13 1 2.1829 8.7870 -0.7001 14 1 0.0829 7.5744 -0.6977 15 6 2.1975 -1.2687 -0.0006 16 1 2.8761 -1.2968 0.8519 17 6 1.2063 -2.4300 0.0981 18 8 0.4303 -2.4970 -1.1000 19 6 2.9893 -1.3911 -1.2770 20 6 2.4667 -0.9105 -2.4632 21 6 3.1948 -1.0188 -3.6332 22 6 4.4415 -1.6160 -3.6188 23 6 4.9618 -2.1011 -2.4336 24 6 4.2357 -1.9887 -1.2627 25 1 -0.3633 -0.0980 1.0230 26 1 -0.3634 0.9349 -0.4266 27 1 -0.3634 -0.8370 -0.5964 28 1 0.7583 2.5302 -0.8892 29 1 0.7589 2.5299 0.8908 30 1 3.0068 3.5776 0.8894 31 1 3.0054 3.5775 -0.8907 32 1 4.1154 6.9745 -0.0024 33 1 0.5456 -2.2723 0.9505 34 1 1.7527 -3.3639 0.2298 35 1 -0.2205 -3.2122 -1.1076 36 1 1.4913 -0.4471 -2.4750 37 1 2.7885 -0.6395 -4.5592 38 1 5.0091 -1.7029 -4.5334 39 1 5.9355 -2.5681 -2.4224 40 1 4.6419 -2.3681 -0.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297206505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = -81.206954 kcal Electronic energy + Delta-G solvation = -21819.082715 eV Core-core repulsion = 18597.942976 eV Total energy + Delta-G solvation = -3221.139739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42908 -39.70416 -38.18272 -35.99858 -35.59461 -33.54333 -32.42070 -31.68863 -29.50791 -27.80760 -27.46820 -24.39963 -23.63045 -23.32602 -21.64446 -19.86336 -18.84202 -18.57388 -17.98411 -17.24362 -17.03203 -16.65623 -16.46839 -15.99238 -15.58165 -15.26601 -14.81629 -14.78014 -14.25945 -14.17958 -13.82997 -13.72154 -13.60342 -13.28777 -13.21394 -12.85424 -12.80596 -12.58421 -12.44419 -11.93984 -11.88391 -11.78451 -11.58087 -11.31001 -11.02316 -10.57503 -10.51694 -9.76279 -9.68101 -9.43686 -8.18418 -6.33016 0.48857 0.57465 1.41091 1.44431 1.55378 1.74671 2.08861 2.42967 2.93567 3.14297 3.32724 3.76499 3.85626 4.02860 4.11497 4.19980 4.29177 4.38977 4.45911 4.48882 4.52259 4.57154 4.62850 4.70658 4.78812 4.85887 5.01072 5.13344 5.18236 5.20666 5.46941 5.58051 5.58799 5.61431 5.64811 5.82032 5.85251 6.16721 6.17323 6.44937 6.85232 6.99283 7.32864 7.37673 8.94457 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.004491 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.512283 B = 6233.574002 C = 6938.183104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.605 5.605 3 C 0.506 3.494 4 O -0.580 6.580 5 C -0.114 4.114 6 C 0.046 3.954 7 C -0.543 4.543 8 H 0.075 0.925 9 C -0.007 4.007 10 N -0.938 5.938 11 Si 0.975 3.025 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.255 1.255 15 C 0.178 3.822 16 H 0.083 0.917 17 C 0.089 3.911 18 O -0.571 6.571 19 C -0.086 4.086 20 C -0.097 4.097 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.132 4.132 24 C -0.128 4.128 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.100 0.900 30 H -0.019 1.019 31 H -0.023 1.023 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 -22.482 -2.201 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.339 5.339 3 C 0.296 3.704 4 O -0.459 6.459 5 C -0.154 4.154 6 C 0.008 3.992 7 C -0.581 4.581 8 H 0.093 0.907 9 C -0.204 4.204 10 N -0.578 5.578 11 Si 0.799 3.201 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.179 1.179 15 C 0.075 3.925 16 H 0.100 0.900 17 C 0.011 3.989 18 O -0.380 6.380 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.147 4.147 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.118 0.882 30 H -0.001 1.001 31 H -0.004 1.004 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.711 -21.892 -2.345 23.329 hybrid contribution -0.012 0.723 0.166 0.742 sum -7.723 -21.169 -2.179 22.639 Atomic orbital electron populations 1.22454 0.77126 1.05622 1.03485 1.48015 1.08341 1.04045 1.73456 1.21320 0.87754 0.86600 0.74750 1.90650 1.16416 1.88024 1.50796 1.21614 0.99219 0.90526 1.04011 1.18656 0.93590 0.92543 0.94370 1.21695 0.93926 0.91568 1.50875 0.90674 1.26158 0.95713 1.03993 0.94535 1.70195 1.08391 1.27806 1.51453 0.85300 0.78652 0.77567 0.78604 1.19538 1.21140 1.17868 1.20201 0.93400 0.83997 0.94891 0.89960 1.22188 0.92898 0.95600 0.88221 1.86537 1.54635 1.57482 1.39395 1.20073 0.95147 0.98288 0.95171 1.20907 0.99513 0.98571 0.92578 1.21401 0.95856 1.00171 0.98577 1.21404 0.95879 0.98787 0.99062 1.21372 1.00453 1.00547 0.92572 1.21203 0.94089 1.00260 0.99118 0.91247 0.91124 0.86612 0.88614 0.88169 1.00098 1.00429 0.92859 0.90193 0.90366 0.75059 0.87125 0.85300 0.84225 0.84026 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.13 9.12 127.77 1.17 2.29 16 2 N -0.61 -18.07 2.20 -826.79 -1.82 -19.88 16 3 C 0.51 21.13 7.15 87.66 0.63 21.76 16 4 O -0.58 -30.01 15.28 -3.04 -0.05 -30.06 16 5 C -0.11 -4.92 4.11 29.85 0.12 -4.80 16 6 C 0.05 2.68 4.26 29.85 0.13 2.81 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 10 N -0.94 -61.00 13.29 21.45 0.28 -60.72 16 11 Si 0.98 45.13 29.54 68.60 2.03 47.16 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.25 -10.93 7.11 99.48 0.71 -10.23 16 15 C 0.18 4.67 2.68 44.25 0.12 4.79 16 16 H 0.08 2.29 8.04 -2.39 -0.02 2.28 16 17 C 0.09 1.33 6.02 71.98 0.43 1.76 16 18 O -0.57 -8.13 9.75 -148.98 -1.45 -9.58 16 19 C -0.09 -2.59 3.68 -19.86 -0.07 -2.66 16 20 C -0.10 -3.08 8.13 22.27 0.18 -2.90 16 21 C -0.14 -4.18 10.05 22.27 0.22 -3.95 16 22 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 23 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 24 C -0.13 -3.64 9.68 22.27 0.22 -3.42 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.55 6.25 -2.39 -0.01 1.53 16 27 H 0.12 1.95 4.91 -2.38 -0.01 1.94 16 28 H 0.10 3.75 7.42 -2.38 -0.02 3.73 16 29 H 0.10 3.82 8.11 -2.39 -0.02 3.80 16 30 H -0.02 -1.27 8.10 -2.38 -0.02 -1.29 16 31 H -0.02 -1.51 8.10 -2.38 -0.02 -1.53 16 32 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 33 H 0.08 0.86 7.52 -2.39 -0.02 0.85 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.40 1.65 9.12 -74.06 -0.68 0.97 16 36 H 0.11 3.54 7.58 -2.91 -0.02 3.52 16 37 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 40 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -83.92 330.62 3.64 -80.28 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.36 Total: 15.25 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 4.28 Total: -22.45 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.53 Total: -80.60 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.50 Total: -39.64 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -83.92 3.64 -80.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297206505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.928 kcal (2) G-P(sol) polarization free energy of solvation -83.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds