Wall clock time and date at job start Mon Mar 30 2020 01:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45211 * 109.46804 * 2 1 4 4 C 1.34232 * 116.99809 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99982 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99807 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.47290 * 299.99730 * 6 4 3 8 8 N 1.46505 * 109.46982 * 179.97438 * 6 4 3 9 9 C 1.36931 * 119.99788 * 155.00096 * 8 6 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 6 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 6 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48496 * 109.47141 * 59.99751 * 13 11 9 15 15 H 1.48490 * 109.47071 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00028 * 13 11 9 17 17 C 1.50698 * 109.47100 * 60.00137 * 6 4 3 18 18 C 1.38265 * 120.00199 * 99.72438 * 17 6 4 19 19 C 1.38220 * 119.99648 * 179.80987 * 18 17 6 20 20 C 1.38251 * 120.00282 * 0.39659 * 19 18 17 21 21 C 1.38222 * 119.99856 * 359.85987 * 20 19 18 22 22 C 1.50699 * 119.99925 * 179.97438 * 21 20 19 23 23 C 1.38211 * 119.99917 * 279.99733 * 17 6 4 24 24 C 1.50703 * 120.00087 * 359.97438 * 23 17 6 25 25 H 1.09001 * 109.47377 * 299.99924 * 1 2 3 26 26 H 1.09003 * 109.47298 * 59.99974 * 1 2 3 27 27 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47377 * 240.00076 * 2 1 3 29 29 H 1.09000 * 109.47103 * 119.99282 * 2 1 3 30 30 H 0.97000 * 119.99792 * 334.99891 * 8 6 4 31 31 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 32 32 H 1.07991 * 119.99966 * 0.02562 * 18 17 6 33 33 H 1.08000 * 119.99375 * 180.23363 * 19 18 17 34 34 H 1.07999 * 120.00041 * 179.83395 * 20 19 18 35 35 H 1.09007 * 109.46694 * 269.97741 * 22 21 20 36 36 H 1.09005 * 109.47229 * 29.96681 * 22 21 20 37 37 H 1.08995 * 109.47614 * 149.97658 * 22 21 20 38 38 H 1.09002 * 109.46783 * 89.99610 * 24 23 17 39 39 H 1.08998 * 109.47301 * 210.00112 * 24 23 17 40 40 H 1.09000 * 109.46727 * 330.00220 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9205 2.9376 -0.0012 7 1 3.5843 3.4694 -0.8911 8 7 5.3836 2.8609 -0.0010 9 6 6.1235 3.8982 -0.5026 10 1 5.6286 4.7730 -0.8980 11 6 7.5099 3.8280 -0.4973 12 7 8.1130 2.7622 -0.0150 13 14 8.5195 5.2464 -1.1745 14 1 8.2197 6.4797 -0.4037 15 1 9.9646 4.9265 -1.0552 16 1 8.1766 5.4601 -2.6035 17 6 3.4565 3.6736 1.2293 18 6 4.2923 3.7842 2.3251 19 6 3.8681 4.4626 3.4521 20 6 2.6050 5.0237 3.4868 21 6 1.7675 4.9086 2.3932 22 6 0.3905 5.5196 2.4312 23 6 2.1933 4.2333 1.2644 24 6 1.2802 4.1080 0.0721 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 5.8281 2.0754 0.3544 31 1 9.0818 2.7130 -0.0116 32 1 5.2779 3.3434 2.2992 33 1 4.5224 4.5522 4.3067 34 1 2.2726 5.5515 4.3684 35 1 -0.3198 4.7908 2.8218 36 1 0.4006 6.3985 3.0758 37 1 0.0945 5.8114 1.4236 38 1 0.6824 3.2014 0.1660 39 1 0.6209 4.9749 0.0266 40 1 1.8768 4.0571 -0.8387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297292886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:17 Heat of formation + Delta-G solvation = -54.569830 kcal Electronic energy + Delta-G solvation = -22195.219061 eV Core-core repulsion = 18975.234394 eV Total energy + Delta-G solvation = -3219.984667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24957 -38.98164 -36.39821 -34.86117 -32.89746 -32.51290 -31.46276 -30.35078 -27.37991 -26.54462 -25.81282 -23.62159 -22.72446 -21.39297 -20.24460 -19.54496 -17.88187 -16.74180 -16.35171 -15.91880 -15.60212 -15.25309 -14.57975 -14.26514 -13.82841 -13.60955 -13.47090 -13.12681 -12.79542 -12.67842 -12.51951 -12.46945 -12.19966 -12.05677 -11.69539 -11.60182 -11.41271 -11.11495 -11.01431 -10.89468 -10.51501 -10.35433 -10.25522 -10.21059 -9.97934 -9.75878 -9.06831 -8.06067 -8.00414 -7.15787 -5.84375 -3.17911 1.82976 1.93149 2.78502 3.06605 3.41841 3.46187 3.47229 4.26694 4.52998 5.00371 5.04321 5.12673 5.19329 5.22910 5.35409 5.37579 5.47658 5.52776 5.58128 5.69641 5.71037 5.77886 5.81457 5.85349 5.97642 5.99162 6.05472 6.11446 6.19657 6.28366 6.38850 6.57889 6.72550 6.83297 7.03022 7.11670 7.32158 7.58757 7.63043 8.25761 8.34782 9.43859 9.90412 10.29579 11.36503 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.006904 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.355564 B = 4054.438000 C = 5318.036665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.355 6.355 4 C 0.459 3.541 5 O -0.497 6.497 6 C 0.225 3.775 7 H 0.096 0.904 8 N -0.700 5.700 9 C -0.251 4.251 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.922 5.922 13 Si 0.911 3.089 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.284 1.284 17 C -0.094 4.094 18 C -0.075 4.075 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.106 4.106 22 C -0.109 4.109 23 C -0.071 4.071 24 C -0.116 4.116 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.397 0.603 31 H 0.259 0.741 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.109 0.653 3.439 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.272 6.272 4 C 0.301 3.699 5 O -0.383 6.383 6 C 0.112 3.888 7 H 0.113 0.887 8 N -0.343 5.343 9 C -0.381 4.381 10 H 0.092 0.908 11 C -0.199 4.199 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.210 1.210 17 C -0.098 4.098 18 C -0.093 4.093 19 C -0.153 4.153 20 C -0.141 4.141 21 C -0.106 4.106 22 C -0.166 4.166 23 C -0.072 4.072 24 C -0.172 4.172 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.234 0.766 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.776 0.444 3.343 17.111 hybrid contribution 0.956 0.319 -0.139 1.017 sum -15.820 0.763 3.204 16.159 Atomic orbital electron populations 1.21775 0.93102 1.02468 1.03287 1.22917 0.94941 0.81611 1.02246 1.86606 1.25169 1.30990 1.84469 1.24600 0.80063 0.93484 0.71783 1.90638 1.60261 1.42769 1.44637 1.18650 0.87332 0.86613 0.96230 0.88666 1.42326 0.96647 1.22135 1.73165 1.19118 0.88368 0.96134 1.34472 0.90787 1.24785 0.96421 0.97696 1.01035 1.69693 1.08905 1.28071 1.50177 0.86219 0.79259 0.81553 0.78843 1.20980 1.21559 1.21037 1.20563 0.93207 0.99498 0.96528 1.21213 1.00069 0.96565 0.91487 1.21076 0.96062 0.99633 0.98498 1.20869 0.94433 1.01133 0.97688 1.19571 0.96372 1.00503 0.94145 1.20759 0.93702 0.99811 1.02290 1.19550 0.94356 0.97818 0.95443 1.20908 0.98636 1.01924 0.95753 0.91634 0.91606 0.90774 0.91622 0.91706 0.76636 0.93132 0.84660 0.86747 0.87071 0.91877 0.92321 0.91464 0.90231 0.92084 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 37.15 0.38 -1.02 16 2 C 0.06 0.76 6.19 37.15 0.23 0.99 16 3 O -0.36 -5.75 7.46 -39.26 -0.29 -6.05 16 4 C 0.46 9.21 7.31 36.00 0.26 9.47 16 5 O -0.50 -11.49 15.59 -18.75 -0.29 -11.78 16 6 C 0.22 4.71 2.49 -70.23 -0.18 4.53 16 7 H 0.10 1.91 6.35 -51.93 -0.33 1.58 16 8 N -0.70 -17.85 3.61 -55.69 -0.20 -18.05 16 9 C -0.25 -6.84 9.92 -15.06 -0.15 -6.98 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 12 N -0.92 -27.68 13.06 55.49 0.72 -26.95 16 13 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.09 -1.83 5.02 -104.62 -0.52 -2.36 16 18 C -0.08 -1.52 9.33 -39.58 -0.37 -1.89 16 19 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 20 C -0.12 -1.88 9.70 -39.58 -0.38 -2.26 16 21 C -0.11 -1.59 5.88 -104.62 -0.62 -2.20 16 22 C -0.11 -1.22 9.60 36.01 0.35 -0.88 16 23 C -0.07 -1.17 5.75 -104.62 -0.60 -1.77 16 24 C -0.12 -1.58 8.14 36.01 0.29 -1.28 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.40 11.13 6.99 -40.82 -0.29 10.85 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.14 3.08 7.14 -52.49 -0.37 2.71 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.07 0.69 5.95 -51.93 -0.31 0.38 16 38 H 0.08 1.02 6.75 -51.93 -0.35 0.67 16 39 H 0.06 0.70 5.95 -51.93 -0.31 0.39 16 40 H 0.06 0.92 6.12 -51.93 -0.32 0.60 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -31.24 330.17 -7.53 -38.77 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.62 Total: 10.51 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.80 Total: -8.51 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.52 Total: -45.00 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.59 Total: -17.83 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.24 -7.53 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297292886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.797 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds