Wall clock time and date at job start Mon Mar 30 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99821 * 2 1 4 4 C 1.38789 * 120.02780 * 0.02562 * 3 2 1 5 5 C 1.38160 * 120.05521 * 180.29617 * 4 3 2 6 6 C 1.38198 * 120.10438 * 359.44921 * 5 4 3 7 7 C 1.50703 * 119.96834 * 180.29867 * 6 5 4 8 8 N 1.46509 * 109.46861 * 260.24830 * 7 6 5 9 9 C 1.36944 * 119.99425 * 90.00426 * 8 7 6 10 10 H 1.07992 * 119.99157 * 214.71973 * 9 8 7 11 11 C 1.38804 * 119.99728 * 34.72415 * 9 8 7 12 12 N 1.31619 * 120.00646 * 22.26955 * 11 9 8 13 13 Si 1.86806 * 119.99643 * 202.26822 * 11 9 8 14 14 H 1.48506 * 109.47090 * 89.99782 * 13 11 9 15 15 H 1.48501 * 109.47372 * 210.00076 * 13 11 9 16 16 H 1.48503 * 109.47297 * 330.00412 * 13 11 9 17 17 C 1.46497 * 120.00361 * 270.00120 * 8 7 6 18 18 C 1.52993 * 117.50151 * 192.51332 * 17 8 7 19 19 C 1.52994 * 117.49849 * 123.85154 * 17 8 7 20 20 C 1.38755 * 120.05753 * 0.54962 * 6 5 4 21 21 O 1.35891 * 120.02978 * 179.74690 * 20 6 5 22 22 C 1.42892 * 117.00125 * 179.97438 * 21 20 6 23 23 C 1.38616 * 120.02581 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47371 * 299.99497 * 1 2 3 26 26 H 1.09000 * 109.47361 * 59.99902 * 1 2 3 27 27 H 1.07999 * 119.97540 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.94544 * 179.72171 * 5 4 3 29 29 H 1.08988 * 109.47492 * 20.25021 * 7 6 5 30 30 H 1.09000 * 109.46992 * 140.25346 * 7 6 5 31 31 H 0.97000 * 119.99768 * 174.60030 * 12 11 9 32 32 H 1.09001 * 115.54972 * 338.18446 * 17 8 7 33 33 H 1.09004 * 117.49372 * 359.97438 * 18 17 8 34 34 H 1.08994 * 117.50007 * 145.01919 * 18 17 8 35 35 H 1.09007 * 117.50294 * 214.98082 * 19 17 8 36 36 H 1.09006 * 117.50019 * 359.97438 * 19 17 8 37 37 H 1.08999 * 109.47241 * 179.97438 * 22 21 20 38 38 H 1.09006 * 109.47358 * 299.99904 * 22 21 20 39 39 H 1.09002 * 109.47653 * 60.00031 * 22 21 20 40 40 H 1.08003 * 120.05454 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6065 -0.0056 6 6 3.2971 3.6821 -0.0009 7 6 3.9773 5.0269 -0.0008 8 7 4.4113 5.3546 -1.3613 9 6 3.5718 6.0351 -2.2024 10 1 3.5766 5.8193 -3.2606 11 6 2.7151 7.0020 -1.6949 12 7 2.9835 7.5805 -0.5435 13 14 1.1808 7.4825 -2.6462 14 1 0.0487 6.6161 -2.2300 15 1 0.8477 8.9019 -2.3641 16 1 1.4263 7.3112 -4.1007 17 6 5.7433 4.9544 -1.8217 18 6 6.2532 5.5676 -3.1273 19 6 5.8257 4.0984 -3.0870 20 6 4.0567 2.5210 -0.0014 21 8 5.4135 2.5960 -0.0019 22 6 6.1315 1.3606 -0.0019 23 6 3.4302 1.2841 -0.0005 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2121 2.3187 0.0014 28 1 1.3276 4.5114 -0.0098 29 1 3.2799 5.7869 0.3510 30 1 4.8440 4.9956 0.6594 31 1 2.4288 8.3102 -0.2264 32 1 6.4744 4.7632 -1.0362 33 1 5.5975 6.2685 -3.6439 34 1 7.3199 5.7795 -3.2009 35 1 6.6113 3.3442 -3.1343 36 1 4.8888 3.8326 -3.5768 37 1 7.2026 1.5628 -0.0028 38 1 5.8702 0.7884 0.8884 39 1 5.8696 0.7879 -0.8916 40 1 4.0197 0.3791 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298283708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:11 Heat of formation + Delta-G solvation = -10.682379 kcal Electronic energy + Delta-G solvation = -22406.587238 eV Core-core repulsion = 19188.505674 eV Total energy + Delta-G solvation = -3218.081564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.37928 -39.82140 -38.65513 -37.37946 -35.25768 -33.04303 -31.45170 -30.71824 -28.39604 -27.98293 -26.98708 -25.03551 -23.05919 -22.91053 -22.17248 -21.51266 -19.54069 -18.27955 -17.69293 -17.23970 -16.97865 -16.78603 -16.34888 -16.23342 -16.07248 -15.67369 -15.39553 -14.76596 -14.51615 -14.11128 -13.66538 -13.37004 -13.16954 -13.14098 -12.96203 -12.69262 -12.53413 -12.28459 -12.23244 -12.16400 -12.04622 -11.83551 -11.62207 -11.47294 -11.26758 -10.86275 -10.37888 -9.46132 -8.77071 -8.39644 -7.80579 -5.35785 0.49209 0.58956 1.42867 1.46000 1.53571 2.29034 2.48665 2.62714 2.85086 3.18195 3.53284 3.71416 3.90629 4.13731 4.20492 4.34153 4.38004 4.40648 4.43295 4.48454 4.52851 4.56365 4.65293 4.69493 4.75324 4.80940 4.84762 4.95637 4.96470 5.10666 5.32263 5.41189 5.41404 5.56794 5.63309 5.67340 5.76767 5.94736 6.40961 6.50876 6.65422 7.18514 7.90563 8.42183 9.16408 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.007812 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.822678 B = 3583.313753 C = 4921.664283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.146 3.854 4 C -0.247 4.247 5 C -0.046 4.046 6 C -0.161 4.161 7 C 0.196 3.804 8 N -0.555 5.555 9 C -0.252 4.252 10 H 0.048 0.952 11 C -0.028 4.028 12 N -0.915 5.915 13 Si 0.947 3.053 14 H -0.282 1.282 15 H -0.291 1.291 16 H -0.276 1.276 17 C 0.123 3.877 18 C -0.199 4.199 19 C -0.201 4.201 20 C 0.170 3.830 21 O -0.315 6.315 22 C 0.019 3.981 23 C -0.250 4.250 24 H 0.125 0.875 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.254 0.746 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -14.772 2.316 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.101 3.899 4 C -0.266 4.266 5 C -0.065 4.065 6 C -0.164 4.164 7 C 0.071 3.929 8 N -0.271 5.271 9 C -0.382 4.382 10 H 0.066 0.934 11 C -0.225 4.225 12 N -0.560 5.560 13 Si 0.776 3.224 14 H -0.208 1.208 15 H -0.217 1.217 16 H -0.201 1.201 17 C 0.015 3.985 18 C -0.238 4.238 19 C -0.242 4.242 20 C 0.123 3.877 21 O -0.228 6.228 22 C -0.075 4.075 23 C -0.269 4.269 24 H 0.143 0.857 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.161 0.839 28 H 0.128 0.872 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.136 0.864 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.102 -14.678 2.457 14.883 hybrid contribution -1.158 0.573 -0.629 1.437 sum -1.056 -14.105 1.828 14.262 Atomic orbital electron populations 1.23324 0.76600 1.05531 1.02031 1.85985 1.23338 1.26306 1.88752 1.18633 0.91685 0.84309 0.95311 1.21201 1.00637 0.91558 1.13158 1.20662 0.93384 0.97167 0.95266 1.20308 0.93567 0.96009 1.06492 1.19616 0.96936 0.90930 0.85424 1.43490 1.10612 1.61387 1.11627 1.19004 1.14543 1.13811 0.90890 0.93444 1.25614 1.02393 0.96380 0.98144 1.69985 1.39799 1.23451 1.22741 0.85588 0.81159 0.76881 0.78808 1.20815 1.21713 1.20149 1.21178 0.88030 1.00247 0.89065 1.23118 1.00370 0.95954 1.04326 1.23170 1.01168 0.93188 1.06664 1.18525 0.83052 0.92300 0.93817 1.86163 1.14704 1.33942 1.87964 1.23293 0.97440 0.84970 1.01813 1.20445 0.92909 0.97331 1.16264 0.85663 0.91902 0.92475 0.83933 0.87174 0.90305 0.95110 0.93613 0.88334 0.91119 0.88006 0.88116 0.92370 0.86417 0.91772 0.92399 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.17 10.49 -92.41 -0.97 -10.14 16 3 C 0.15 4.80 6.68 22.49 0.15 4.95 16 4 C -0.25 -8.47 9.04 22.38 0.20 -8.27 16 5 C -0.05 -1.88 9.66 22.24 0.21 -1.67 16 6 C -0.16 -6.98 5.48 -19.75 -0.11 -7.08 16 7 C 0.20 9.67 5.13 85.63 0.44 10.11 16 8 N -0.56 -28.26 2.79 -682.37 -1.90 -30.17 16 9 C -0.25 -13.92 8.20 84.03 0.69 -13.23 16 10 H 0.05 2.70 7.15 -2.91 -0.02 2.68 16 11 C -0.03 -1.55 4.96 84.86 0.42 -1.13 16 12 N -0.92 -52.76 11.32 21.65 0.25 -52.52 16 13 Si 0.95 44.71 29.61 68.60 2.03 46.74 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 C 0.12 5.43 5.57 44.99 0.25 5.68 16 18 C -0.20 -8.11 9.79 30.62 0.30 -7.81 16 19 C -0.20 -7.88 10.13 30.62 0.31 -7.57 16 20 C 0.17 6.41 6.66 22.49 0.15 6.56 16 21 O -0.31 -10.79 8.41 -92.32 -0.78 -11.57 16 22 C 0.02 0.44 9.81 113.37 1.11 1.55 16 23 C -0.25 -8.31 8.97 22.46 0.20 -8.10 16 24 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 26 H 0.06 1.06 7.66 -2.39 -0.02 1.05 16 27 H 0.14 4.05 6.29 -2.91 -0.02 4.03 16 28 H 0.11 4.81 8.04 -2.91 -0.02 4.79 16 29 H 0.08 4.35 5.20 -2.39 -0.01 4.33 16 30 H 0.03 1.49 7.75 -2.39 -0.02 1.47 16 31 H 0.25 14.15 8.32 -92.71 -0.77 13.38 16 32 H 0.10 4.12 7.86 -2.39 -0.02 4.10 16 33 H 0.07 3.26 6.82 -2.38 -0.02 3.24 16 34 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 35 H 0.10 3.28 8.14 -2.38 -0.02 3.27 16 36 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 1.26 7.66 -2.38 -0.02 1.24 16 39 H 0.06 1.24 7.66 -2.39 -0.02 1.22 16 40 H 0.15 4.11 6.30 -2.91 -0.02 4.09 16 Total: -1.00 -65.03 328.90 5.11 -59.92 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 1.03 Total: 22.25 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 5.44 Total: -24.52 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.66 Total: -82.68 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -1.75 Total: -21.71 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -65.03 5.11 -59.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298283708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.242 kcal (2) G-P(sol) polarization free energy of solvation -65.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds