Wall clock time and date at job start Mon Mar 30 2020 01:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47542 * 2 1 4 4 C 1.37101 * 119.99612 * 264.77332 * 3 2 1 5 5 H 1.07998 * 119.99866 * 138.84995 * 4 3 2 6 6 C 1.38942 * 119.99879 * 318.84207 * 4 3 2 7 7 N 1.31411 * 120.00245 * 341.83252 * 6 4 3 8 8 Si 1.86801 * 119.99865 * 161.82901 * 6 4 3 9 9 H 1.48498 * 109.47383 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47224 * 120.00280 * 8 6 4 11 11 H 1.48504 * 109.47141 * 240.00212 * 8 6 4 12 12 C 1.34774 * 120.00272 * 84.76680 * 3 2 1 13 13 O 1.21291 * 120.00226 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99846 * 0.02562 * 12 3 2 15 15 C 1.53001 * 109.46881 * 180.02562 * 14 12 3 16 16 O 1.42898 * 109.46769 * 180.02562 * 15 14 12 17 17 C 1.42909 * 113.99838 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46960 * 179.97438 * 17 16 15 19 19 C 1.38232 * 120.00101 * 90.00193 * 18 17 16 20 20 C 1.38232 * 120.00250 * 179.97438 * 19 18 17 21 21 C 1.38231 * 119.99761 * 359.97438 * 20 19 18 22 22 C 1.38232 * 120.00408 * 0.27925 * 21 20 19 23 23 C 1.38232 * 120.00007 * 269.97510 * 18 17 16 24 24 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47081 * 300.00154 * 1 2 3 26 26 H 1.08994 * 109.47026 * 59.99906 * 1 2 3 27 27 H 1.09003 * 109.47038 * 239.99397 * 2 1 3 28 28 H 1.09003 * 109.46935 * 120.00020 * 2 1 3 29 29 H 0.97002 * 120.00335 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46761 * 60.00312 * 14 12 3 31 31 H 1.09002 * 109.47073 * 299.99981 * 14 12 3 32 32 H 1.08993 * 109.47230 * 60.00147 * 15 14 12 33 33 H 1.09001 * 109.46860 * 300.00274 * 15 14 12 34 34 H 1.08999 * 109.46907 * 59.99845 * 17 16 15 35 35 H 1.08997 * 109.47158 * 299.99773 * 17 16 15 36 36 H 1.08004 * 120.00108 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.00135 * 180.02562 * 20 19 18 38 38 H 1.08007 * 119.99975 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00398 * 179.73093 * 22 21 20 40 40 H 1.08002 * 120.00357 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3489 1.9913 -1.1824 5 1 2.0744 3.0217 -1.3536 6 6 3.0372 1.2840 -2.1605 7 7 3.6792 0.1817 -1.8450 8 14 3.0499 1.9001 -3.9239 9 1 2.2584 3.1532 -4.0162 10 1 4.4488 2.1666 -4.3451 11 1 2.4531 0.8706 -4.8123 12 6 2.1428 2.0520 1.1623 13 8 2.5467 3.1957 1.1622 14 6 1.7799 1.3811 2.4621 15 6 2.0106 2.3541 3.6200 16 8 1.6671 1.7178 4.8525 17 6 1.8477 2.5449 6.0038 18 6 1.4568 1.7771 7.2402 19 6 2.4016 1.0280 7.9162 20 6 2.0431 0.3241 9.0506 21 6 0.7399 0.3699 9.5093 22 6 -0.2061 1.1148 8.8304 23 6 0.1535 1.8225 7.6987 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.1594 -0.3123 -2.5279 30 1 2.4020 0.4968 2.6005 31 1 0.7305 1.0871 2.4386 32 1 1.3883 3.2381 3.4813 33 1 3.0599 2.6485 3.6435 34 1 1.2220 3.4330 5.9149 35 1 2.8936 2.8431 6.0764 36 1 3.4199 0.9925 7.5580 37 1 2.7813 -0.2608 9.5790 38 1 0.4597 -0.1804 10.3955 39 1 -1.2253 1.1471 9.1864 40 1 -0.5847 2.4078 7.1706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299284915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:37 Heat of formation + Delta-G solvation = -59.389793 kcal Electronic energy + Delta-G solvation = -20704.311312 eV Core-core repulsion = 17484.117635 eV Total energy + Delta-G solvation = -3220.193676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.47153 -38.67303 -37.33417 -34.97302 -32.51185 -31.99953 -31.03763 -30.34551 -29.39739 -26.15656 -25.07549 -22.93143 -22.71329 -22.00499 -21.41571 -18.69860 -17.07130 -16.86313 -16.46674 -16.09011 -15.52125 -15.31269 -15.06824 -14.68508 -14.22727 -13.85714 -13.79028 -13.52541 -12.93439 -12.87059 -12.67315 -12.40192 -12.33630 -11.78126 -11.59922 -11.20746 -11.16402 -11.03950 -10.98922 -10.88856 -10.71484 -10.33792 -10.27635 -10.06072 -9.38035 -9.05387 -8.97244 -8.91255 -8.40311 -7.41138 -6.30643 -3.99393 1.13927 1.26798 3.16973 3.26983 3.33007 3.47303 3.92991 4.01763 4.23612 4.69915 4.73217 4.86026 4.96983 5.02266 5.13836 5.18490 5.32851 5.42259 5.51209 5.56629 5.59609 5.82393 5.84612 5.89316 5.90723 6.07246 6.20262 6.27513 6.30223 6.34896 6.37441 6.46284 6.49700 6.59090 6.84298 6.90085 7.24583 7.39607 7.59870 8.31451 8.52802 9.20492 9.41246 10.03030 10.74559 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037842 B = 0.002986 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.734379 B = 9376.313887 C = 9533.572149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.440 5.440 4 C -0.308 4.308 5 H 0.088 0.912 6 C 0.038 3.962 7 N -0.871 5.871 8 Si 0.918 3.082 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.466 3.534 13 O -0.585 6.585 14 C -0.133 4.133 15 C 0.081 3.919 16 O -0.387 6.387 17 C 0.102 3.898 18 C -0.085 4.085 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.099 4.099 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.267 0.733 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -1.919 17.457 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.159 5.159 4 C -0.436 4.436 5 H 0.106 0.894 6 C -0.167 4.167 7 N -0.509 5.509 8 Si 0.745 3.255 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.254 3.746 13 O -0.469 6.469 14 C -0.173 4.173 15 C 0.005 3.995 16 O -0.307 6.307 17 C 0.026 3.974 18 C -0.085 4.085 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.118 4.118 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.732 -1.690 17.333 18.335 hybrid contribution 0.149 0.224 -0.893 0.933 sum -5.583 -1.466 16.441 17.425 Atomic orbital electron populations 1.22219 0.98188 1.00416 1.01532 1.21472 0.91656 0.85528 1.03535 1.43440 1.55949 1.11800 1.04759 1.19419 1.34801 0.98556 0.90867 0.89417 1.25434 0.94064 0.96566 1.00592 1.69938 1.29528 1.17563 1.33880 0.86009 0.78118 0.79002 0.82406 1.19203 1.20762 1.20623 1.20155 0.81945 0.87812 0.84722 1.90514 1.50549 1.18841 1.87019 1.21500 1.03319 0.99616 0.92870 1.22191 1.00047 0.95172 0.82087 1.87887 1.88257 1.40502 1.14040 1.21255 1.00129 0.92366 0.83695 1.19704 0.94065 0.98928 0.95777 1.21118 0.99627 0.95853 0.95109 1.21145 0.96529 0.99748 0.96856 1.21174 0.93518 0.99122 0.99894 1.21141 0.99492 0.97749 0.95933 1.21105 0.95469 0.98998 0.96182 0.93057 0.93776 0.92453 0.87890 0.93188 0.92326 0.89438 0.89709 0.92736 0.92599 0.92515 0.92460 0.85825 0.85989 0.86171 0.86015 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 10.15 37.16 0.38 -2.63 16 2 C 0.10 2.24 5.41 -4.04 -0.02 2.22 16 3 N -0.44 -11.29 2.50 -114.81 -0.29 -11.57 16 4 C -0.31 -8.63 8.84 -14.93 -0.13 -8.76 16 5 H 0.09 2.56 7.82 -52.49 -0.41 2.15 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.75 11.61 55.50 0.64 -23.11 16 8 Si 0.92 20.74 29.59 -169.99 -5.03 15.71 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.47 11.55 7.59 -10.98 -0.08 11.46 16 13 O -0.59 -16.41 15.89 5.55 0.09 -16.32 16 14 C -0.13 -2.58 4.68 -27.88 -0.13 -2.71 16 15 C 0.08 1.45 5.23 37.16 0.19 1.64 16 16 O -0.39 -6.28 10.33 -35.23 -0.36 -6.64 16 17 C 0.10 1.33 6.06 36.00 0.22 1.54 16 18 C -0.08 -1.03 5.51 -104.63 -0.58 -1.61 16 19 C -0.10 -1.11 9.70 -39.59 -0.38 -1.49 16 20 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 21 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 22 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.76 6.60 -51.93 -0.34 0.41 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.10 2.48 5.76 -51.93 -0.30 2.18 16 28 H 0.05 1.01 6.66 -51.93 -0.35 0.67 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.09 1.65 7.41 -51.93 -0.38 1.26 16 31 H 0.08 1.51 6.54 -51.93 -0.34 1.18 16 32 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.06 1.03 8.10 -51.93 -0.42 0.60 16 34 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -31.83 337.24 -7.97 -39.79 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.90 Total: 2.65 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -2.20 Total: -5.58 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.36 Total: -34.68 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.28 Total: -22.96 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.83 -7.97 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299284915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.598 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds