Wall clock time and date at job start Mon Mar 30 2020 01:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47542 * 2 1 4 4 C 1.37101 * 119.99612 * 264.77332 * 3 2 1 5 5 H 1.07998 * 119.99866 * 138.84995 * 4 3 2 6 6 C 1.38942 * 119.99879 * 318.84207 * 4 3 2 7 7 N 1.31411 * 120.00245 * 341.83252 * 6 4 3 8 8 Si 1.86801 * 119.99865 * 161.82901 * 6 4 3 9 9 H 1.48498 * 109.47383 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47224 * 120.00280 * 8 6 4 11 11 H 1.48504 * 109.47141 * 240.00212 * 8 6 4 12 12 C 1.34774 * 120.00272 * 84.76680 * 3 2 1 13 13 O 1.21291 * 120.00226 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99846 * 0.02562 * 12 3 2 15 15 C 1.53001 * 109.46881 * 180.02562 * 14 12 3 16 16 O 1.42898 * 109.46769 * 180.02562 * 15 14 12 17 17 C 1.42909 * 113.99838 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46960 * 179.97438 * 17 16 15 19 19 C 1.38232 * 120.00101 * 90.00193 * 18 17 16 20 20 C 1.38232 * 120.00250 * 179.97438 * 19 18 17 21 21 C 1.38231 * 119.99761 * 359.97438 * 20 19 18 22 22 C 1.38232 * 120.00408 * 0.27925 * 21 20 19 23 23 C 1.38232 * 120.00007 * 269.97510 * 18 17 16 24 24 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47081 * 300.00154 * 1 2 3 26 26 H 1.08994 * 109.47026 * 59.99906 * 1 2 3 27 27 H 1.09003 * 109.47038 * 239.99397 * 2 1 3 28 28 H 1.09003 * 109.46935 * 120.00020 * 2 1 3 29 29 H 0.97002 * 120.00335 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46761 * 60.00312 * 14 12 3 31 31 H 1.09002 * 109.47073 * 299.99981 * 14 12 3 32 32 H 1.08993 * 109.47230 * 60.00147 * 15 14 12 33 33 H 1.09001 * 109.46860 * 300.00274 * 15 14 12 34 34 H 1.08999 * 109.46907 * 59.99845 * 17 16 15 35 35 H 1.08997 * 109.47158 * 299.99773 * 17 16 15 36 36 H 1.08004 * 120.00108 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.00135 * 180.02562 * 20 19 18 38 38 H 1.08007 * 119.99975 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00398 * 179.73093 * 22 21 20 40 40 H 1.08002 * 120.00357 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3489 1.9913 -1.1824 5 1 2.0744 3.0217 -1.3536 6 6 3.0372 1.2840 -2.1605 7 7 3.6792 0.1817 -1.8450 8 14 3.0499 1.9001 -3.9239 9 1 2.2584 3.1532 -4.0162 10 1 4.4488 2.1666 -4.3451 11 1 2.4531 0.8706 -4.8123 12 6 2.1428 2.0520 1.1623 13 8 2.5467 3.1957 1.1622 14 6 1.7799 1.3811 2.4621 15 6 2.0106 2.3541 3.6200 16 8 1.6671 1.7178 4.8525 17 6 1.8477 2.5449 6.0038 18 6 1.4568 1.7771 7.2402 19 6 2.4016 1.0280 7.9162 20 6 2.0431 0.3241 9.0506 21 6 0.7399 0.3699 9.5093 22 6 -0.2061 1.1148 8.8304 23 6 0.1535 1.8225 7.6987 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.1594 -0.3123 -2.5279 30 1 2.4020 0.4968 2.6005 31 1 0.7305 1.0871 2.4386 32 1 1.3883 3.2381 3.4813 33 1 3.0599 2.6485 3.6435 34 1 1.2220 3.4330 5.9149 35 1 2.8936 2.8431 6.0764 36 1 3.4199 0.9925 7.5580 37 1 2.7813 -0.2608 9.5790 38 1 0.4597 -0.1804 10.3955 39 1 -1.2253 1.1471 9.1864 40 1 -0.5847 2.4078 7.1706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299284915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:36 Heat of formation + Delta-G solvation = -77.424189 kcal Electronic energy + Delta-G solvation = -20705.093342 eV Core-core repulsion = 17484.117635 eV Total energy + Delta-G solvation = -3220.975706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62413 -40.21386 -38.58048 -36.92110 -34.18756 -33.35922 -31.78565 -31.76037 -31.12915 -27.48470 -26.66964 -24.55354 -23.68391 -23.46871 -22.24980 -20.54211 -18.80161 -18.16236 -17.75525 -17.39660 -17.11146 -16.57822 -16.34310 -16.06940 -15.88695 -15.34819 -14.93886 -14.54117 -14.43350 -14.27375 -13.96738 -13.66307 -13.55887 -13.35550 -13.28507 -12.87818 -12.67702 -12.53590 -12.33715 -12.14538 -12.04018 -11.89739 -11.84401 -11.75378 -10.89778 -10.65273 -10.41387 -9.81678 -9.76031 -9.41820 -8.34618 -6.11877 0.33633 0.50613 1.36718 1.41249 1.55063 2.02124 2.25007 2.47805 2.97535 3.00533 3.33925 3.86776 3.90419 3.95446 4.06056 4.15644 4.25998 4.30005 4.32656 4.33369 4.43242 4.58202 4.63616 4.66272 4.75088 4.77398 4.84588 4.94571 5.07399 5.07702 5.16514 5.29835 5.45582 5.55073 5.55611 5.61250 5.68317 6.09351 6.14838 6.23374 6.53277 7.16619 7.44184 8.04538 8.69436 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037842 B = 0.002986 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.734379 B = 9376.313887 C = 9533.572149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.453 5.453 4 C -0.342 4.342 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.891 5.891 8 Si 0.983 3.017 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.263 1.263 12 C 0.452 3.548 13 O -0.629 6.629 14 C -0.119 4.119 15 C 0.093 3.907 16 O -0.394 6.394 17 C 0.097 3.903 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.113 4.113 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.273 0.727 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 -3.280 18.536 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 N -0.171 5.171 4 C -0.470 4.470 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.529 5.529 8 Si 0.807 3.193 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.188 1.188 12 C 0.242 3.758 13 O -0.516 6.516 14 C -0.159 4.159 15 C 0.016 3.984 16 O -0.314 6.314 17 C 0.021 3.979 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.148 4.148 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.131 4.131 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.796 -3.088 18.426 19.881 hybrid contribution 0.495 0.616 -1.130 1.379 sum -6.301 -2.472 17.297 18.574 Atomic orbital electron populations 1.22110 0.95134 1.02603 1.01399 1.21586 0.94131 0.83417 1.03120 1.43741 1.55874 1.13036 1.04490 1.19389 1.36646 0.98205 0.92806 0.92000 1.26190 0.93078 0.96598 1.04068 1.70001 1.29416 1.18184 1.35282 0.85046 0.78055 0.78696 0.77539 1.19481 1.20490 1.18751 1.20995 0.81136 0.87460 0.86242 1.90472 1.52442 1.20839 1.87889 1.21350 1.04561 0.99503 0.90439 1.21918 0.99290 0.94580 0.82628 1.87855 1.88230 1.41202 1.14120 1.21447 1.00805 0.92633 0.83000 1.19746 0.95053 1.00171 0.95807 1.21302 0.99759 0.96332 0.95949 1.21463 0.97523 0.99418 0.96360 1.21571 0.93103 0.98552 1.00451 1.21477 1.00867 0.97051 0.95287 1.21306 0.95204 0.99595 0.97031 0.89639 0.92668 0.93814 0.90175 0.91612 0.91703 0.88546 0.87605 0.93102 0.93778 0.91608 0.91949 0.85602 0.83836 0.83414 0.83673 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 10.15 71.98 0.73 -4.61 16 2 C 0.10 4.35 5.41 86.38 0.47 4.82 16 3 N -0.45 -23.57 2.50 -635.54 -1.59 -25.16 16 4 C -0.34 -19.66 8.84 84.04 0.74 -18.92 16 5 H 0.06 3.79 7.82 -2.91 -0.02 3.76 16 6 C 0.00 0.18 4.95 84.92 0.42 0.60 16 7 N -0.89 -48.69 11.61 21.66 0.25 -48.44 16 8 Si 0.98 42.68 29.59 68.60 2.03 44.71 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 12 C 0.45 22.82 7.59 87.66 0.67 23.49 16 13 O -0.63 -36.54 15.89 -3.06 -0.05 -36.59 16 14 C -0.12 -4.55 4.68 29.85 0.14 -4.41 16 15 C 0.09 3.30 5.23 71.98 0.38 3.68 16 16 O -0.39 -12.55 10.33 -148.98 -1.54 -14.09 16 17 C 0.10 2.50 6.06 71.24 0.43 2.93 16 18 C -0.11 -2.55 5.51 -19.87 -0.11 -2.66 16 19 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 20 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 21 C -0.12 -1.86 10.05 22.27 0.22 -1.63 16 22 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 23 C -0.11 -2.36 9.70 22.27 0.22 -2.15 16 24 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.05 1.77 6.60 -2.39 -0.02 1.76 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 27 H 0.08 3.85 5.76 -2.39 -0.01 3.84 16 28 H 0.07 2.58 6.66 -2.39 -0.02 2.57 16 29 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.10 3.53 7.41 -2.39 -0.02 3.51 16 31 H 0.11 3.60 6.54 -2.39 -0.02 3.58 16 32 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 33 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 35 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 36 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.77 337.24 5.09 -64.68 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 1.02 Total: 20.00 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.97 Total: -5.12 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.34 Total: -73.60 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -1.59 Total: -50.68 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -69.77 5.09 -64.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299284915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.741 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds