Wall clock time and date at job start Mon Mar 30 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 116.99968 * 2 1 4 4 C 1.38769 * 120.02583 * 180.02562 * 3 2 1 5 5 C 1.38181 * 120.05268 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.94233 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46875 * 90.00202 * 6 5 4 8 8 C 1.36939 * 120.00018 * 89.99933 * 7 6 5 9 9 H 1.07996 * 119.99804 * 215.11410 * 8 7 6 10 10 C 1.38808 * 119.99895 * 35.11529 * 8 7 6 11 11 N 1.31616 * 120.00312 * 21.75491 * 10 8 7 12 12 Si 1.86801 * 119.99662 * 201.75484 * 10 8 7 13 13 H 1.48499 * 109.47245 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.47346 * 300.00072 * 12 10 8 15 15 H 1.48507 * 109.47407 * 60.00150 * 12 10 8 16 16 C 1.46494 * 119.99963 * 269.99692 * 7 6 5 17 17 C 1.53004 * 117.50070 * 191.63999 * 16 7 6 18 18 C 1.52995 * 117.50069 * 122.97887 * 16 7 6 19 19 C 1.38173 * 120.10813 * 0.23265 * 5 4 3 20 20 C 1.38766 * 120.05617 * 359.49292 * 19 5 4 21 21 O 1.35899 * 120.02991 * 180.23258 * 20 19 5 22 22 C 1.42896 * 117.00239 * 180.29750 * 21 20 19 23 23 C 1.38634 * 120.02533 * 0.02562 * 3 2 1 24 24 H 1.09009 * 109.46907 * 299.99490 * 1 2 3 25 25 H 1.09000 * 109.47501 * 59.99467 * 1 2 3 26 26 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.97477 * 0.02562 * 4 3 2 28 28 H 1.08996 * 109.47482 * 329.99747 * 6 5 4 29 29 H 1.09001 * 109.46600 * 209.99781 * 6 5 4 30 30 H 0.97005 * 119.99873 * 179.97438 * 11 10 8 31 31 H 1.09003 * 115.55265 * 337.30952 * 16 7 6 32 32 H 1.08997 * 117.49630 * 359.97438 * 17 16 7 33 33 H 1.09000 * 117.49652 * 145.02158 * 17 16 7 34 34 H 1.09003 * 117.50087 * 214.97992 * 18 16 7 35 35 H 1.09002 * 117.49889 * 359.97438 * 18 16 7 36 36 H 1.08002 * 119.96997 * 179.72272 * 19 5 4 37 37 H 1.08999 * 109.47602 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47153 * 299.99698 * 22 21 20 39 39 H 1.09000 * 109.47635 * 59.99961 * 22 21 20 40 40 H 1.08000 * 120.05891 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4317 1.2841 -0.0005 5 6 4.0596 2.5150 0.0000 6 6 5.5647 2.5917 0.0000 7 7 6.0523 2.6172 -1.3813 8 6 6.2199 3.8135 -2.0263 9 1 6.0193 3.8889 -3.0847 10 6 6.6474 4.9290 -1.3195 11 7 7.2905 4.7801 -0.1808 12 14 6.3102 6.6417 -1.9847 13 1 6.8641 7.6538 -1.0498 14 1 6.9529 6.7917 -3.3149 15 1 4.8446 6.8414 -2.1178 16 6 6.3607 1.3629 -2.0724 17 6 7.1166 1.4549 -3.3996 18 6 5.6316 1.0835 -3.3882 19 6 3.3098 3.6756 0.0059 20 6 1.9238 3.6076 0.0007 21 8 1.1869 4.7494 0.0018 22 6 -0.2347 4.6042 0.0028 23 6 1.2914 2.3739 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0199 0.3784 -0.0014 28 1 5.9729 1.7212 0.5134 29 1 5.8822 3.4988 0.5142 30 1 7.5896 5.5598 0.3128 31 1 6.5785 0.5117 -1.4272 32 1 7.3840 2.4487 -3.7585 33 1 7.8312 0.6641 -3.6275 34 1 5.3700 0.0486 -3.6088 35 1 4.9221 1.8328 -3.7393 36 1 3.8029 4.6364 0.0109 37 1 -0.7007 5.5895 0.0031 38 1 -0.5446 4.0565 -0.8872 39 1 -0.5433 4.0557 0.8928 40 1 0.2128 2.3189 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299346463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:14 Heat of formation + Delta-G solvation = 2.645667 kcal Electronic energy + Delta-G solvation = -22056.413472 eV Core-core repulsion = 18838.909855 eV Total energy + Delta-G solvation = -3217.503617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09039 -38.48824 -37.34938 -36.06454 -33.45465 -31.20383 -29.84368 -29.33909 -27.85359 -26.34747 -25.50748 -23.52080 -21.89781 -21.32550 -20.52961 -19.80319 -17.99804 -16.65295 -16.22000 -15.70668 -15.63206 -15.48414 -15.27751 -15.19682 -14.49459 -14.35353 -13.84078 -13.23039 -12.96956 -12.90926 -12.26299 -11.92831 -11.81691 -11.68828 -11.40444 -11.12123 -11.02273 -10.83960 -10.71262 -10.57889 -10.49208 -10.14404 -10.06588 -10.01051 -9.60453 -9.26430 -8.43854 -8.01933 -7.45677 -6.57875 -5.83814 -3.38999 1.90859 2.05549 3.37046 3.43158 3.47833 3.50669 3.58578 4.28303 4.47505 4.97809 5.05112 5.11711 5.15767 5.18806 5.20853 5.34383 5.38391 5.43736 5.48333 5.53374 5.69693 5.93430 6.02100 6.11585 6.16670 6.25658 6.36062 6.52996 6.61505 6.68032 6.73195 6.84922 7.02145 7.19308 7.26221 7.34022 7.49319 7.68385 7.79235 7.94085 8.45349 9.11416 9.74747 10.29619 11.15032 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.007137 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.690713 B = 3922.426692 C = 5206.224975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.149 3.851 4 C -0.179 4.179 5 C 0.002 3.998 6 C 0.172 3.828 7 N -0.540 5.540 8 C -0.254 4.254 9 H 0.063 0.937 10 C 0.015 3.985 11 N -0.883 5.883 12 Si 0.894 3.106 13 H -0.289 1.289 14 H -0.281 1.281 15 H -0.279 1.279 16 C 0.128 3.872 17 C -0.194 4.194 18 C -0.225 4.225 19 C -0.159 4.159 20 C 0.151 3.849 21 O -0.316 6.316 22 C 0.031 3.969 23 C -0.311 4.311 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 -5.776 1.644 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.105 3.895 4 C -0.198 4.198 5 C -0.001 4.001 6 C 0.046 3.954 7 N -0.254 5.254 8 C -0.383 4.383 9 H 0.081 0.919 10 C -0.185 4.185 11 N -0.525 5.525 12 Si 0.723 3.277 13 H -0.214 1.214 14 H -0.207 1.207 15 H -0.205 1.205 16 C 0.019 3.981 17 C -0.233 4.233 18 C -0.266 4.266 19 C -0.179 4.179 20 C 0.106 3.894 21 O -0.230 6.230 22 C -0.065 4.065 23 C -0.331 4.331 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.427 -5.603 1.792 13.749 hybrid contribution -0.929 0.874 -0.564 1.395 sum -13.356 -4.729 1.228 14.221 Atomic orbital electron populations 1.22934 0.79463 1.03180 1.00893 1.86057 1.20553 1.27555 1.89108 1.18708 0.92103 0.82963 0.95757 1.20238 0.90346 0.98586 1.10675 1.20857 0.99498 0.90122 0.89657 1.20180 0.84301 1.03656 0.87238 1.43287 1.70669 1.00331 1.11137 1.18905 1.39259 0.86002 0.94174 0.91932 1.25074 0.96924 0.98794 0.97749 1.69940 1.36473 1.29412 1.16684 0.86500 0.78694 0.84119 0.78411 1.21427 1.20660 1.20485 1.21107 0.99681 0.90537 0.86749 1.23089 0.93445 1.02118 1.04664 1.23358 0.95052 0.99897 1.08322 1.20338 0.89291 1.00098 1.08128 1.18818 0.91282 0.83972 0.95294 1.86106 1.18332 1.29632 1.88904 1.22938 0.79625 1.03159 1.00772 1.20964 0.99376 0.92182 1.20580 0.93176 0.93145 0.88751 0.85973 0.93998 0.86808 0.93208 0.89367 0.88319 0.90738 0.90947 0.89822 0.85218 0.88726 0.93171 0.93197 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.02 10.50 -19.41 -0.20 -5.22 16 3 C 0.15 2.65 6.68 -39.24 -0.26 2.39 16 4 C -0.18 -3.45 9.64 -39.41 -0.38 -3.83 16 5 C 0.00 0.04 5.46 -104.66 -0.57 -0.53 16 6 C 0.17 3.96 5.46 -5.19 -0.03 3.93 16 7 N -0.54 -13.13 2.78 -167.03 -0.46 -13.60 16 8 C -0.25 -6.74 8.21 -15.06 -0.12 -6.86 16 9 H 0.06 1.70 7.14 -52.49 -0.37 1.32 16 10 C 0.02 0.40 4.97 -17.43 -0.09 0.32 16 11 N -0.88 -24.41 11.32 55.49 0.63 -23.78 16 12 Si 0.89 21.40 29.61 -169.99 -5.03 16.36 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.13 2.76 6.60 -67.93 -0.45 2.31 16 17 C -0.19 -3.92 9.79 -26.69 -0.26 -4.18 16 18 C -0.23 -4.46 10.16 -26.70 -0.27 -4.73 16 19 C -0.16 -3.41 9.63 -39.41 -0.38 -3.79 16 20 C 0.15 2.88 6.68 -39.24 -0.26 2.61 16 21 O -0.32 -5.54 10.50 -19.42 -0.20 -5.74 16 22 C 0.03 0.36 9.81 101.05 0.99 1.35 16 23 C -0.31 -5.24 8.02 -39.29 -0.32 -5.56 16 24 H 0.05 0.49 7.66 -51.92 -0.40 0.09 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.04 0.90 7.99 -51.93 -0.41 0.48 16 29 H 0.11 2.92 5.29 -51.93 -0.27 2.64 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.09 1.75 8.11 -51.93 -0.42 1.32 16 32 H 0.10 2.19 6.80 -51.93 -0.35 1.83 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.13 3.01 8.06 -52.49 -0.42 2.58 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 40 H 0.12 1.67 4.54 -52.49 -0.24 1.44 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -29.48 332.58 -7.43 -36.91 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.76 Total: 5.30 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.41 Total: -15.24 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.16 Total: -37.38 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.41 Total: -10.96 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.48 -7.43 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299346463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.556 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds