Wall clock time and date at job start Mon Mar 30 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 117.00114 * 2 1 4 4 C 1.38695 * 120.00044 * 180.02562 * 3 2 1 5 5 C 1.38135 * 119.99707 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.99928 * 359.97438 * 5 4 3 7 7 O 1.35981 * 119.99598 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00058 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47436 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47117 * 65.00084 * 9 8 7 11 11 C 1.36939 * 119.99911 * 270.00238 * 10 9 8 12 12 H 1.08001 * 119.99979 * 141.34441 * 11 10 9 13 13 C 1.38811 * 120.00158 * 321.34275 * 11 10 9 14 14 N 1.31617 * 120.00527 * 157.87376 * 13 11 10 15 15 Si 1.86803 * 119.99593 * 337.87241 * 13 11 10 16 16 H 1.48495 * 109.47015 * 95.68027 * 15 13 11 17 17 H 1.48507 * 109.47029 * 215.67559 * 15 13 11 18 18 H 1.48496 * 109.47266 * 335.67386 * 15 13 11 19 19 C 1.46495 * 120.00083 * 89.99909 * 10 9 8 20 20 C 1.53006 * 117.49933 * 183.19243 * 19 10 9 21 21 C 1.53007 * 117.49724 * 114.53274 * 19 10 9 22 22 C 1.38694 * 120.00395 * 0.25581 * 6 5 4 23 23 C 1.38138 * 119.99553 * 359.48921 * 22 6 5 24 24 H 1.09005 * 109.46921 * 299.99941 * 1 2 3 25 25 H 1.09003 * 109.47243 * 59.99486 * 1 2 3 26 26 H 1.08993 * 109.46925 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99950 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.99436 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47208 * 300.00307 * 8 7 6 30 30 H 1.08999 * 109.46878 * 59.99962 * 8 7 6 31 31 H 1.08998 * 109.46856 * 184.99875 * 9 8 7 32 32 H 1.08997 * 109.47086 * 305.00202 * 9 8 7 33 33 H 0.96998 * 120.00169 * 180.02562 * 14 13 11 34 34 H 1.09002 * 115.55204 * 328.86525 * 19 10 9 35 35 H 1.08992 * 117.49819 * 359.97438 * 20 19 10 36 36 H 1.09005 * 117.49526 * 145.02427 * 20 19 10 37 37 H 1.09005 * 117.49817 * 214.97859 * 21 19 10 38 38 H 1.09000 * 117.49734 * 359.97438 * 21 19 10 39 39 H 1.07994 * 119.99911 * 179.72373 * 22 6 5 40 40 H 1.08000 * 119.99901 * 180.23119 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4315 1.2842 -0.0005 5 6 4.0585 2.5150 0.0000 6 6 3.3031 3.6782 0.0005 7 8 3.9204 4.8898 0.0016 8 6 3.0805 6.0459 0.0027 9 6 3.9478 7.3064 0.0031 10 7 4.7049 7.3787 -1.2490 11 6 5.9445 6.8029 -1.3337 12 1 6.2430 6.2944 -2.2386 13 6 6.8173 6.8728 -0.2566 14 7 7.7913 5.9951 -0.1408 15 14 6.6096 8.2126 1.0284 16 1 5.8246 7.6837 2.1725 17 1 7.9455 8.6520 1.5057 18 1 5.8940 9.3672 0.4285 19 6 4.1360 8.0669 -2.4104 20 6 4.9425 8.0437 -3.7104 21 6 4.8409 9.3354 -2.8952 22 6 1.9180 3.6057 0.0059 23 6 1.2910 2.3748 0.0000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 4.0196 0.3785 -0.0014 28 1 5.1370 2.5715 0.0000 29 1 2.4512 6.0386 -0.8873 30 1 2.4513 6.0370 0.8927 31 1 3.3103 8.1859 0.0935 32 1 4.6397 7.2711 0.8446 33 1 8.4010 6.0438 0.6121 34 1 3.0495 8.0326 -2.4915 35 1 5.8966 7.5168 -3.7013 36 1 4.3866 7.9945 -4.6467 37 1 4.2183 10.1355 -3.2956 38 1 5.7278 9.6580 -2.3497 39 1 1.3299 4.5114 0.0108 40 1 0.2124 2.3183 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299349629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:16 Heat of formation + Delta-G solvation = 13.186960 kcal Electronic energy + Delta-G solvation = -21574.559143 eV Core-core repulsion = 18357.512631 eV Total energy + Delta-G solvation = -3217.046512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06334 -38.64437 -37.22081 -35.92436 -33.54319 -31.52390 -30.91034 -29.30326 -28.02047 -26.92030 -24.30597 -23.20555 -21.83314 -21.53082 -21.15147 -19.59085 -18.17652 -17.30855 -16.61971 -16.09852 -15.69852 -15.56296 -15.28084 -14.60803 -14.54525 -14.05687 -13.70343 -13.38254 -12.99780 -12.74008 -12.68961 -12.33270 -12.11146 -12.08923 -11.88562 -11.40213 -11.17401 -10.82203 -10.78626 -10.48631 -10.42204 -10.09955 -9.91749 -9.73755 -9.42727 -9.41809 -8.80751 -8.44651 -7.34230 -6.72604 -5.93835 -3.36508 1.52144 1.80264 3.31000 3.38698 3.47306 3.51412 3.90849 4.04638 4.54371 4.73630 4.84900 4.89295 4.99156 5.07525 5.11063 5.34697 5.34920 5.45138 5.61737 5.70837 5.72275 5.76760 5.83199 5.86889 6.00429 6.04801 6.10288 6.19814 6.38817 6.42014 6.47841 6.49410 6.58690 6.73555 6.90095 6.92435 7.11975 7.51011 8.05125 8.14291 8.45369 8.99417 9.74796 10.10927 11.21327 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021764 B = 0.004750 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.214384 B = 5893.810317 C = 6420.051962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.069 3.931 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.115 3.885 7 O -0.267 6.267 8 C 0.045 3.955 9 C 0.137 3.863 10 N -0.568 5.568 11 C -0.257 4.257 12 H 0.081 0.919 13 C 0.047 3.953 14 N -0.893 5.893 15 Si 0.867 3.133 16 H -0.286 1.286 17 H -0.301 1.301 18 H -0.268 1.268 19 C 0.117 3.883 20 C -0.186 4.186 21 C -0.223 4.223 22 C -0.184 4.184 23 C -0.169 4.169 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.132 0.868 28 H 0.143 0.857 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.262 0.738 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.581 -5.210 0.373 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.025 3.975 4 C -0.128 4.128 5 C -0.131 4.131 6 C 0.068 3.932 7 O -0.178 6.178 8 C -0.034 4.034 9 C 0.011 3.989 10 N -0.286 5.286 11 C -0.385 4.385 12 H 0.098 0.902 13 C -0.154 4.154 14 N -0.533 5.533 15 Si 0.697 3.303 16 H -0.214 1.214 17 H -0.229 1.229 18 H -0.192 1.192 19 C 0.009 3.991 20 C -0.224 4.224 21 C -0.264 4.264 22 C -0.203 4.203 23 C -0.188 4.188 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.150 0.850 28 H 0.161 0.839 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.115 -5.416 0.482 15.126 hybrid contribution -0.562 0.985 0.768 1.370 sum -14.677 -4.431 1.249 15.382 Atomic orbital electron populations 1.22943 0.79255 1.03294 1.01001 1.86039 1.20631 1.27141 1.89887 1.18811 0.92280 0.83864 1.02553 1.20203 0.91100 0.97825 1.03685 1.20413 1.00977 0.88943 1.02775 1.19221 0.90666 0.87341 0.96017 1.86543 1.33829 1.10569 1.86896 1.23669 0.94070 0.86631 0.98991 1.21354 0.94391 0.92296 0.90900 1.43616 1.16908 1.60846 1.07241 1.18579 0.88932 1.28124 1.02900 0.90182 1.25379 0.95485 0.96873 0.97706 1.69854 1.19063 1.33557 1.30817 0.87084 0.76265 0.84952 0.82030 1.21382 1.22890 1.19247 1.21167 0.93501 0.95301 0.89134 1.23058 1.03675 1.01687 0.94003 1.23391 1.04776 0.91883 1.06374 1.21042 0.93744 0.98000 1.07495 1.20904 0.99341 0.91870 1.06652 0.93094 0.93039 0.88740 0.84964 0.83928 0.92957 0.93790 0.91758 0.91576 0.92826 0.89330 0.87798 0.90555 0.90890 0.89267 0.85619 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.33 10.50 -19.71 -0.21 -4.54 16 3 C 0.07 1.03 6.69 -39.24 -0.26 0.77 16 4 C -0.11 -1.71 9.98 -39.45 -0.39 -2.11 16 5 C -0.11 -2.02 9.98 -39.45 -0.39 -2.41 16 6 C 0.11 2.16 6.68 -39.24 -0.26 1.90 16 7 O -0.27 -5.81 9.61 -19.68 -0.19 -6.00 16 8 C 0.04 0.82 5.08 37.16 0.19 1.01 16 9 C 0.14 2.83 4.98 -4.04 -0.02 2.81 16 10 N -0.57 -13.08 2.37 -165.66 -0.39 -13.47 16 11 C -0.26 -6.98 8.46 -15.06 -0.13 -7.11 16 12 H 0.08 2.39 6.86 -52.49 -0.36 2.03 16 13 C 0.05 1.32 5.30 -17.43 -0.09 1.23 16 14 N -0.89 -26.90 13.97 55.49 0.78 -26.13 16 15 Si 0.87 21.82 25.07 -169.99 -4.26 17.56 16 16 H -0.29 -7.03 6.69 56.52 0.38 -6.65 16 17 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 C 0.12 2.32 6.56 -67.93 -0.45 1.88 16 20 C -0.19 -3.55 9.80 -26.69 -0.26 -3.81 16 21 C -0.22 -4.20 10.36 -26.69 -0.28 -4.48 16 22 C -0.18 -2.91 9.03 -39.45 -0.36 -3.26 16 23 C -0.17 -2.39 9.03 -39.45 -0.36 -2.75 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.14 2.66 8.06 -52.49 -0.42 2.23 16 29 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 30 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 31 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 32 H 0.07 1.53 3.41 -51.93 -0.18 1.36 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.10 2.26 6.45 -51.93 -0.33 1.92 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 39 H 0.13 1.76 6.29 -52.49 -0.33 1.43 16 40 H 0.12 1.38 6.29 -52.49 -0.33 1.05 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -31.35 327.32 -7.07 -38.42 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.66 Total: 4.30 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.07 Total: -15.08 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.38 Total: -39.60 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.40 Total: -10.54 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.26 Total: 17.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.35 -7.07 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299349629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.609 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds