Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35993 * 116.99715 * 2 1 4 4 C 1.38565 * 120.07530 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.00172 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14628 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.14623 * 359.96021 * 6 5 4 8 8 C 1.50696 * 120.00115 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47115 * 259.99865 * 8 7 6 10 10 C 1.36933 * 120.00270 * 89.99738 * 9 8 7 11 11 H 1.07993 * 120.00113 * 215.90189 * 10 9 8 12 12 C 1.38815 * 120.00053 * 35.90590 * 10 9 8 13 13 N 1.31625 * 119.99661 * 21.29553 * 12 10 9 14 14 Si 1.86797 * 120.00387 * 201.29434 * 12 10 9 15 15 H 1.48504 * 109.47155 * 270.00196 * 14 12 10 16 16 H 1.48506 * 109.46884 * 29.99740 * 14 12 10 17 17 H 1.48494 * 109.47552 * 149.99796 * 14 12 10 18 18 C 1.46505 * 119.99858 * 269.99685 * 9 8 7 19 19 C 1.52996 * 117.49852 * 191.59883 * 18 9 8 20 20 C 1.53004 * 60.00258 * 252.51329 * 19 18 9 21 21 C 1.38561 * 119.99790 * 0.27260 * 7 6 5 22 22 O 1.35996 * 120.07382 * 179.75267 * 21 7 6 23 23 C 1.42898 * 117.00333 * 89.99734 * 22 21 7 24 24 H 1.08991 * 109.46826 * 299.99637 * 1 2 3 25 25 H 1.08996 * 109.46892 * 59.99694 * 1 2 3 26 26 H 1.08996 * 109.46895 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00207 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.92768 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.93119 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47034 * 139.99439 * 8 7 6 31 31 H 1.09003 * 109.47334 * 19.99552 * 8 7 6 32 32 H 0.96998 * 120.00130 * 176.98752 * 13 12 10 33 33 H 1.08994 * 115.55136 * 337.31145 * 18 9 8 34 34 H 1.08996 * 117.49945 * 359.97438 * 19 18 9 35 35 H 1.08997 * 117.50164 * 145.02447 * 19 18 9 36 36 H 1.09001 * 117.49772 * 252.51405 * 20 19 18 37 37 H 1.08997 * 117.49970 * 107.48484 * 20 19 18 38 38 H 1.09001 * 109.47644 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.47310 * 300.00557 * 23 22 21 40 40 H 1.09002 * 109.47008 * 59.99938 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9223 3.6058 0.0011 6 6 3.3028 3.6800 0.0005 7 6 4.0603 2.5234 0.0003 8 6 5.5649 2.6081 -0.0009 9 7 6.0649 2.3957 -1.3614 10 6 6.2327 3.4623 -2.2035 11 1 6.0293 3.3545 -3.2586 12 6 6.6645 4.6821 -1.7011 13 7 7.3028 4.7313 -0.5510 14 14 6.3399 6.2538 -2.6570 15 1 7.4733 6.5146 -3.5804 16 1 5.0869 6.1067 -3.4405 17 1 6.2013 7.3894 -1.7103 18 6 6.3853 1.0420 -1.8210 19 6 7.1519 0.9060 -3.1380 20 6 5.6693 0.5333 -3.0739 21 6 3.4360 1.2865 -0.0051 22 8 4.1796 0.1478 -0.0104 23 6 4.5347 -0.4011 1.2602 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2146 2.3197 0.0014 28 1 1.3341 4.5116 0.0011 29 1 3.7907 4.6434 0.0005 30 1 5.9723 1.8428 0.6597 31 1 5.8737 3.5928 0.3500 32 1 7.6429 5.5776 -0.2208 33 1 6.6010 0.3176 -1.0356 34 1 7.4174 1.8237 -3.6628 35 1 7.8723 0.0922 -3.2194 36 1 5.4145 -0.5258 -3.1129 37 1 4.9600 1.2059 -3.5561 38 1 5.1259 -1.3050 1.1132 39 1 5.1199 0.3282 1.8204 40 1 3.6296 -0.6450 1.8164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299395674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = 7.738556 kcal Electronic energy + Delta-G solvation = -22672.106786 eV Core-core repulsion = 19454.824014 eV Total energy + Delta-G solvation = -3217.282773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03461 -37.91634 -36.77668 -36.28436 -33.50850 -31.30940 -29.62565 -29.31465 -27.15799 -26.53073 -25.29465 -23.44859 -21.72439 -21.19208 -20.69944 -19.69796 -17.68864 -16.74222 -16.33396 -16.05063 -15.64276 -15.28931 -14.74800 -14.48692 -14.28159 -14.08668 -13.75959 -13.30587 -13.02814 -12.79159 -12.08133 -11.92746 -11.74010 -11.50232 -11.24656 -11.11349 -10.91623 -10.76532 -10.64717 -10.47844 -10.34584 -10.27313 -9.96677 -9.49466 -9.34744 -9.14831 -8.41578 -8.04205 -7.63347 -6.48757 -5.83407 -3.35946 1.75015 1.94274 3.32669 3.40651 3.45626 3.52812 4.03493 4.41524 4.50420 5.08251 5.10146 5.21315 5.27309 5.36147 5.43323 5.46350 5.52267 5.68372 5.74046 5.79727 5.90192 5.97352 6.09964 6.14236 6.26921 6.36926 6.46482 6.55713 6.65537 6.74051 6.79498 6.93808 7.15039 7.24519 7.26796 7.29279 7.51215 7.66243 7.81838 8.21250 8.49285 9.14812 9.78671 10.35704 11.16793 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.007304 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.920891 B = 3832.447766 C = 4640.650746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.097 3.903 4 C -0.218 4.218 5 C -0.094 4.094 6 C -0.126 4.126 7 C -0.053 4.053 8 C 0.181 3.819 9 N -0.538 5.538 10 C -0.251 4.251 11 H 0.062 0.938 12 C 0.013 3.987 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.285 1.285 16 H -0.277 1.277 17 H -0.287 1.287 18 C 0.145 3.855 19 C -0.202 4.202 20 C -0.217 4.217 21 C 0.069 3.931 22 O -0.311 6.311 23 C 0.035 3.965 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.037 0.963 31 H 0.111 0.889 32 H 0.257 0.743 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.200 -6.692 4.239 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.052 3.948 4 C -0.238 4.238 5 C -0.112 4.112 6 C -0.145 4.145 7 C -0.056 4.056 8 C 0.055 3.945 9 N -0.253 5.253 10 C -0.380 4.380 11 H 0.080 0.920 12 C -0.187 4.187 13 N -0.530 5.530 14 Si 0.723 3.277 15 H -0.212 1.212 16 H -0.202 1.202 17 H -0.213 1.213 18 C 0.036 3.964 19 C -0.241 4.241 20 C -0.257 4.257 21 C 0.024 3.976 22 O -0.227 6.227 23 C -0.060 4.060 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.143 0.857 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.953 -6.805 4.214 12.772 hybrid contribution -0.686 1.069 -0.486 1.360 sum -10.639 -5.736 3.728 12.648 Atomic orbital electron populations 1.22955 0.79629 1.03152 1.00920 1.86134 1.20278 1.26969 1.89171 1.19454 0.91742 0.84292 0.99322 1.20894 0.99061 0.92180 1.11618 1.20890 0.94852 0.96433 0.99020 1.20968 0.92841 0.98607 1.02117 1.21480 1.00647 0.90401 0.93110 1.20021 0.83986 1.03759 0.86726 1.43239 1.70023 1.00558 1.11434 1.18961 1.39014 0.88573 0.91468 0.92048 1.25111 0.97266 0.98984 0.97315 1.69906 1.36429 1.25407 1.21260 0.86418 0.78606 0.83192 0.79443 1.21156 1.20226 1.21321 1.20960 0.98858 0.88314 0.88296 1.23126 0.93630 1.02090 1.05249 1.23219 0.94557 0.99409 1.08545 1.17865 0.85521 0.86746 1.07445 1.86165 1.70347 1.38546 1.27617 1.22895 0.99016 0.98241 0.85815 0.93198 0.93037 0.88853 0.86195 0.86473 0.85704 0.94448 0.87192 0.93315 0.89429 0.88552 0.90944 0.91016 0.90213 0.89655 0.93843 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -5.12 10.28 -34.22 -0.35 -5.47 16 3 C 0.10 1.75 6.70 -39.12 -0.26 1.49 16 4 C -0.22 -3.53 9.04 -39.46 -0.36 -3.89 16 5 C -0.09 -1.58 10.04 -39.57 -0.40 -1.98 16 6 C -0.13 -2.50 9.66 -39.57 -0.38 -2.88 16 7 C -0.05 -1.12 5.47 -104.50 -0.57 -1.69 16 8 C 0.18 4.23 5.13 -5.20 -0.03 4.20 16 9 N -0.54 -13.42 2.78 -167.03 -0.46 -13.88 16 10 C -0.25 -6.73 8.18 -15.06 -0.12 -6.85 16 11 H 0.06 1.69 7.18 -52.49 -0.38 1.32 16 12 C 0.01 0.35 4.97 -17.43 -0.09 0.26 16 13 N -0.89 -24.50 11.34 55.49 0.63 -23.87 16 14 Si 0.89 21.16 29.61 -169.99 -5.03 16.12 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.14 3.27 5.52 -67.93 -0.38 2.89 16 19 C -0.20 -4.28 9.78 -26.73 -0.26 -4.54 16 20 C -0.22 -4.58 10.16 -26.73 -0.27 -4.85 16 21 C 0.07 1.39 5.71 -39.12 -0.22 1.16 16 22 O -0.31 -6.03 8.21 -34.23 -0.28 -6.31 16 23 C 0.04 0.54 10.85 101.05 1.10 1.64 16 24 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.12 1.56 6.30 -52.49 -0.33 1.23 16 28 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.12 2.53 8.03 -52.49 -0.42 2.11 16 30 H 0.04 0.84 6.47 -51.93 -0.34 0.50 16 31 H 0.11 2.83 5.25 -51.93 -0.27 2.55 16 32 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 33 H 0.09 1.89 7.90 -51.93 -0.41 1.48 16 34 H 0.10 2.21 6.81 -51.93 -0.35 1.86 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.66 7.12 -51.93 -0.37 0.29 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -29.74 330.19 -7.54 -37.27 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.76 Total: 4.87 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.25 Total: -13.71 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.17 Total: -37.75 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.63 Total: -11.78 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.74 -7.54 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299395674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.010 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds