Wall clock time and date at job start Mon Mar 30 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35993 * 116.99715 * 2 1 4 4 C 1.38565 * 120.07530 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.00172 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14628 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.14623 * 359.96021 * 6 5 4 8 8 C 1.50696 * 120.00115 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47115 * 259.99865 * 8 7 6 10 10 C 1.36933 * 120.00270 * 89.99738 * 9 8 7 11 11 H 1.07993 * 120.00113 * 215.90189 * 10 9 8 12 12 C 1.38815 * 120.00053 * 35.90590 * 10 9 8 13 13 N 1.31625 * 119.99661 * 21.29553 * 12 10 9 14 14 Si 1.86797 * 120.00387 * 201.29434 * 12 10 9 15 15 H 1.48504 * 109.47155 * 270.00196 * 14 12 10 16 16 H 1.48506 * 109.46884 * 29.99740 * 14 12 10 17 17 H 1.48494 * 109.47552 * 149.99796 * 14 12 10 18 18 C 1.46505 * 119.99858 * 269.99685 * 9 8 7 19 19 C 1.52996 * 117.49852 * 191.59883 * 18 9 8 20 20 C 1.53004 * 60.00258 * 252.51329 * 19 18 9 21 21 C 1.38561 * 119.99790 * 0.27260 * 7 6 5 22 22 O 1.35996 * 120.07382 * 179.75267 * 21 7 6 23 23 C 1.42898 * 117.00333 * 89.99734 * 22 21 7 24 24 H 1.08991 * 109.46826 * 299.99637 * 1 2 3 25 25 H 1.08996 * 109.46892 * 59.99694 * 1 2 3 26 26 H 1.08996 * 109.46895 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00207 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.92768 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.93119 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47034 * 139.99439 * 8 7 6 31 31 H 1.09003 * 109.47334 * 19.99552 * 8 7 6 32 32 H 0.96998 * 120.00130 * 176.98752 * 13 12 10 33 33 H 1.08994 * 115.55136 * 337.31145 * 18 9 8 34 34 H 1.08996 * 117.49945 * 359.97438 * 19 18 9 35 35 H 1.08997 * 117.50164 * 145.02447 * 19 18 9 36 36 H 1.09001 * 117.49772 * 252.51405 * 20 19 18 37 37 H 1.08997 * 117.49970 * 107.48484 * 20 19 18 38 38 H 1.09001 * 109.47644 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.47310 * 300.00557 * 23 22 21 40 40 H 1.09002 * 109.47008 * 59.99938 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9223 3.6058 0.0011 6 6 3.3028 3.6800 0.0005 7 6 4.0603 2.5234 0.0003 8 6 5.5649 2.6081 -0.0009 9 7 6.0649 2.3957 -1.3614 10 6 6.2327 3.4623 -2.2035 11 1 6.0293 3.3545 -3.2586 12 6 6.6645 4.6821 -1.7011 13 7 7.3028 4.7313 -0.5510 14 14 6.3399 6.2538 -2.6570 15 1 7.4733 6.5146 -3.5804 16 1 5.0869 6.1067 -3.4405 17 1 6.2013 7.3894 -1.7103 18 6 6.3853 1.0420 -1.8210 19 6 7.1519 0.9060 -3.1380 20 6 5.6693 0.5333 -3.0739 21 6 3.4360 1.2865 -0.0051 22 8 4.1796 0.1478 -0.0104 23 6 4.5347 -0.4011 1.2602 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2146 2.3197 0.0014 28 1 1.3341 4.5116 0.0011 29 1 3.7907 4.6434 0.0005 30 1 5.9723 1.8428 0.6597 31 1 5.8737 3.5928 0.3500 32 1 7.6429 5.5776 -0.2208 33 1 6.6010 0.3176 -1.0356 34 1 7.4174 1.8237 -3.6628 35 1 7.8723 0.0922 -3.2194 36 1 5.4145 -0.5258 -3.1129 37 1 4.9600 1.2059 -3.5561 38 1 5.1259 -1.3050 1.1132 39 1 5.1199 0.3282 1.8204 40 1 3.6296 -0.6450 1.8164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299395674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:17 Heat of formation + Delta-G solvation = -8.314709 kcal Electronic energy + Delta-G solvation = -22672.802908 eV Core-core repulsion = 19454.824014 eV Total energy + Delta-G solvation = -3217.978894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38245 -39.29024 -38.43031 -37.70310 -35.33588 -33.10959 -31.05918 -30.85460 -28.19912 -27.96833 -26.96027 -25.21068 -23.11211 -22.90766 -22.17049 -21.52897 -19.07640 -18.20108 -17.97957 -17.53605 -17.11238 -16.83370 -16.23458 -15.92971 -15.80005 -15.53792 -15.34397 -14.84495 -14.53381 -14.22508 -13.66906 -13.29295 -13.20605 -13.01849 -12.79977 -12.67388 -12.55293 -12.41970 -12.19169 -12.14509 -11.97233 -11.86701 -11.74565 -11.29597 -10.90344 -10.73916 -10.38015 -9.49971 -8.99230 -8.44517 -7.83132 -5.41240 0.35425 0.52238 1.42820 1.46008 1.55521 2.38469 2.48338 2.67680 3.07757 3.18078 3.51623 3.67484 3.99093 4.09195 4.28679 4.36110 4.42677 4.44971 4.46236 4.49338 4.55327 4.57369 4.64082 4.68604 4.74218 4.81410 4.87913 4.96767 5.00879 5.09563 5.32753 5.38515 5.45379 5.55773 5.61242 5.72056 5.82885 5.87950 6.33534 6.47303 6.85031 7.15096 7.85155 8.38129 9.13065 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.007304 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.920891 B = 3832.447766 C = 4640.650746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.094 3.906 4 C -0.206 4.206 5 C -0.087 4.087 6 C -0.148 4.148 7 C -0.076 4.076 8 C 0.190 3.810 9 N -0.553 5.553 10 C -0.256 4.256 11 H 0.047 0.953 12 C -0.026 4.026 13 N -0.913 5.913 14 Si 0.950 3.050 15 H -0.284 1.284 16 H -0.277 1.277 17 H -0.284 1.284 18 C 0.126 3.874 19 C -0.195 4.195 20 C -0.200 4.200 21 C 0.055 3.945 22 O -0.330 6.330 23 C 0.033 3.967 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.118 0.882 27 H 0.160 0.840 28 H 0.151 0.849 29 H 0.108 0.892 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.036 0.964 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 -7.676 4.126 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.049 3.951 4 C -0.225 4.225 5 C -0.105 4.105 6 C -0.168 4.168 7 C -0.079 4.079 8 C 0.064 3.936 9 N -0.269 5.269 10 C -0.387 4.387 11 H 0.065 0.935 12 C -0.223 4.223 13 N -0.557 5.557 14 Si 0.778 3.222 15 H -0.210 1.210 16 H -0.203 1.203 17 H -0.209 1.209 18 C 0.018 3.982 19 C -0.234 4.234 20 C -0.240 4.240 21 C 0.010 3.990 22 O -0.246 6.246 23 C -0.061 4.061 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.136 0.864 27 H 0.177 0.823 28 H 0.168 0.832 29 H 0.126 0.874 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.055 0.945 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.272 -7.809 4.106 15.115 hybrid contribution -0.082 1.241 -0.406 1.308 sum -12.355 -6.569 3.700 14.473 Atomic orbital electron populations 1.23339 0.76753 1.05400 1.02166 1.86111 1.23193 1.26125 1.88834 1.19510 0.91293 0.85671 0.98656 1.21309 1.00919 0.91011 1.09219 1.21198 0.93598 0.98294 0.97393 1.20973 0.94501 0.97480 1.03825 1.21215 0.99236 0.91823 0.95625 1.19749 0.85948 1.01891 0.85975 1.43371 1.70980 1.00973 1.11538 1.18973 1.38779 0.89680 0.91228 0.93515 1.25663 0.97326 1.01129 0.98225 1.70018 1.37510 1.25702 1.22463 0.85562 0.78172 0.80243 0.78268 1.21050 1.20250 1.20948 1.21124 1.00295 0.87704 0.89091 1.23125 0.94389 1.02081 1.03792 1.23096 0.93976 1.00056 1.06911 1.17948 0.86771 0.86351 1.07926 1.86098 1.70620 1.38323 1.29582 1.23057 0.99723 0.98684 0.84645 0.91422 0.92126 0.86357 0.82292 0.83176 0.87433 0.94682 0.90022 0.93542 0.88603 0.90822 0.87956 0.88682 0.92406 0.87381 0.94521 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.33 -9.89 10.28 -79.61 -0.82 -10.70 16 3 C 0.09 3.22 6.70 22.57 0.15 3.38 16 4 C -0.21 -6.01 9.04 22.35 0.20 -5.80 16 5 C -0.09 -2.75 10.04 22.27 0.22 -2.53 16 6 C -0.15 -5.95 9.66 22.28 0.22 -5.74 16 7 C -0.08 -3.28 5.47 -19.79 -0.11 -3.39 16 8 C 0.19 9.25 5.13 85.63 0.44 9.68 16 9 N -0.55 -28.38 2.78 -682.35 -1.89 -30.27 16 10 C -0.26 -14.21 8.18 84.03 0.69 -13.52 16 11 H 0.05 2.68 7.18 -2.91 -0.02 2.66 16 12 C -0.03 -1.42 4.97 84.86 0.42 -1.00 16 13 N -0.91 -52.12 11.34 21.65 0.25 -51.87 16 14 Si 0.95 44.47 29.61 68.60 2.03 46.50 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 C 0.13 5.73 5.52 44.99 0.25 5.98 16 19 C -0.20 -8.18 9.78 30.59 0.30 -7.89 16 20 C -0.20 -8.34 10.16 30.60 0.31 -8.03 16 21 C 0.06 2.18 5.71 22.57 0.13 2.31 16 22 O -0.33 -12.64 8.21 -79.65 -0.65 -13.29 16 23 C 0.03 0.99 10.85 113.37 1.23 2.22 16 24 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 25 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 26 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.16 3.34 6.30 -2.91 -0.02 3.32 16 28 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.11 4.57 8.03 -2.91 -0.02 4.54 16 30 H 0.03 1.64 6.47 -2.39 -0.02 1.63 16 31 H 0.08 4.44 5.25 -2.39 -0.01 4.42 16 32 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 33 H 0.10 4.14 7.90 -2.39 -0.02 4.12 16 34 H 0.07 3.43 6.81 -2.39 -0.02 3.41 16 35 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 37 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.04 1.12 7.12 -2.38 -0.02 1.10 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -65.62 330.19 5.50 -60.12 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 1.03 Total: 22.41 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 5.56 Total: -22.89 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.65 Total: -82.15 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.47 Total: -24.00 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.62 5.50 -60.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299395674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.804 kcal (2) G-P(sol) polarization free energy of solvation -65.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds