Wall clock time and date at job start Mon Mar 30 2020 01:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47410 * 2 1 4 4 C 1.46503 * 119.99848 * 270.00290 * 3 2 1 5 5 C 1.52995 * 109.46793 * 269.99565 * 4 3 2 6 6 O 1.42897 * 109.47332 * 65.00388 * 5 4 3 7 7 C 1.34772 * 120.00055 * 89.99673 * 3 2 1 8 8 O 1.21279 * 120.00013 * 180.02562 * 7 3 2 9 9 C 1.50700 * 120.00225 * 0.02562 * 7 3 2 10 10 C 1.50702 * 109.47409 * 179.97438 * 9 7 3 11 11 C 1.37631 * 120.12519 * 264.99780 * 10 9 7 12 12 C 1.38620 * 120.24499 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.50152 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.24610 * 0.02650 * 13 12 11 15 15 C 1.40695 * 120.12427 * 84.72687 * 10 9 7 16 16 C 1.41394 * 120.25043 * 359.97438 * 15 10 9 17 17 H 1.08007 * 119.99204 * 333.89541 * 16 15 10 18 18 C 1.39936 * 120.00329 * 153.89427 * 16 15 10 19 19 N 1.30823 * 120.00218 * 343.71110 * 18 16 15 20 20 Si 1.86806 * 120.00088 * 163.71342 * 18 16 15 21 21 H 1.48494 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47003 * 120.00050 * 20 18 16 23 23 H 1.48501 * 109.47005 * 240.00090 * 20 18 16 24 24 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47304 * 300.00147 * 1 2 3 26 26 H 1.08999 * 109.47174 * 59.99859 * 1 2 3 27 27 H 1.09000 * 109.47447 * 240.00094 * 2 1 3 28 28 H 1.09000 * 109.47145 * 119.99585 * 2 1 3 29 29 H 1.08998 * 109.47135 * 29.99866 * 4 3 2 30 30 H 1.08998 * 109.46870 * 149.99585 * 4 3 2 31 31 H 1.09004 * 109.46695 * 184.99808 * 5 4 3 32 32 H 1.08999 * 109.47392 * 304.99640 * 5 4 3 33 33 H 0.96700 * 114.00386 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47278 * 299.99744 * 9 7 3 35 35 H 1.09007 * 109.47234 * 59.99400 * 9 7 3 36 36 H 1.07998 * 119.87972 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.74847 * 180.02562 * 12 11 10 38 38 H 1.07996 * 119.87261 * 179.97438 * 13 12 11 39 39 H 1.08007 * 120.12147 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 8 3.8943 0.4433 -1.9935 7 6 2.2429 2.0166 1.1672 8 8 2.6468 3.1602 1.1671 9 6 1.9922 1.3061 2.4723 10 6 2.3192 2.2292 3.6177 11 6 3.5608 2.1826 4.2098 12 6 3.8643 3.0309 5.2632 13 6 2.9232 3.9344 5.7329 14 6 1.6752 3.9976 5.1568 15 6 1.3582 3.1459 4.0822 16 6 0.0815 3.2071 3.4777 17 1 -0.0447 2.8993 2.4501 18 6 -1.0185 3.6664 4.2107 19 7 -0.9523 3.7360 5.5154 20 14 -2.5817 4.1801 3.3262 21 1 -2.4016 4.0074 1.8623 22 1 -3.7123 3.3357 3.7884 23 1 -2.8738 5.6052 3.6247 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 3.9155 2.4162 -2.6064 32 1 4.3863 2.1342 -0.9131 33 1 4.7897 0.2174 -2.2804 34 1 0.9443 1.0116 2.5303 35 1 2.6227 0.4187 2.5299 36 1 4.3016 1.4831 3.8518 37 1 4.8413 2.9878 5.7216 38 1 3.1703 4.5903 6.5544 39 1 0.9435 4.7019 5.5245 40 1 -1.7147 4.0547 6.0235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305802750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:02 Heat of formation + Delta-G solvation = -73.810522 kcal Electronic energy + Delta-G solvation = -22088.897575 eV Core-core repulsion = 18868.078569 eV Total energy + Delta-G solvation = -3220.819006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.56585 -37.53329 -36.71074 -35.21175 -33.57048 -31.93813 -30.81621 -29.41293 -28.66921 -26.54277 -24.95549 -23.12203 -22.62706 -20.87507 -19.86252 -18.33298 -17.55752 -17.09297 -16.34027 -16.22045 -15.30246 -14.97192 -14.44684 -14.23589 -13.78181 -13.52556 -13.51605 -13.23368 -12.93718 -12.55872 -12.39012 -11.95955 -11.80026 -11.60865 -11.51537 -11.29529 -11.18153 -11.04104 -10.88644 -10.68967 -10.62050 -10.34162 -10.09817 -9.42503 -9.30739 -9.12194 -9.02935 -8.27095 -7.25719 -7.23380 -6.68771 -4.28933 2.81790 3.01429 3.10003 3.15517 3.30501 3.37696 3.50964 3.97531 4.25666 4.70662 5.06472 5.18365 5.23476 5.30851 5.41706 5.52359 5.67751 5.81080 5.88289 5.89449 5.97205 6.01178 6.12893 6.23776 6.33519 6.37449 6.54616 6.56150 6.86138 6.95538 7.13950 7.35053 7.47667 7.53214 7.69366 7.89031 7.99355 8.13418 8.18193 8.37176 8.70300 8.90996 8.97459 9.07132 10.25441 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.006731 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.782824 B = 4158.943755 C = 5367.254971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.112 3.888 3 N -0.619 5.619 4 C 0.118 3.882 5 C 0.060 3.940 6 O -0.571 6.571 7 C 0.517 3.483 8 O -0.525 6.525 9 C -0.069 4.069 10 C -0.179 4.179 11 C -0.083 4.083 12 C -0.239 4.239 13 C -0.108 4.108 14 C -0.159 4.159 15 C 0.128 3.872 16 C -0.455 4.455 17 H 0.074 0.926 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.901 3.099 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.272 1.272 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.374 0.626 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 -6.720 -11.267 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 N -0.355 5.355 4 C -0.005 4.005 5 C -0.019 4.019 6 O -0.376 6.376 7 C 0.307 3.693 8 O -0.399 6.399 9 C -0.108 4.108 10 C -0.181 4.181 11 C -0.101 4.101 12 C -0.259 4.259 13 C -0.126 4.126 14 C -0.178 4.178 15 C 0.126 3.874 16 C -0.484 4.484 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.422 5.422 20 Si 0.725 3.275 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.197 1.197 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.220 0.780 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.537 -6.051 -10.873 12.700 hybrid contribution -0.162 0.297 -0.518 0.619 sum 2.375 -5.754 -11.392 12.981 Atomic orbital electron populations 1.22264 0.96417 1.01881 1.02818 1.21481 0.93811 0.82584 1.03215 1.48035 1.67703 1.14404 1.05327 1.21367 0.94158 0.98991 0.86003 1.22682 0.98474 0.81987 0.98713 1.86467 1.35374 1.25549 1.90236 1.21251 0.76109 0.86827 0.85138 1.90656 1.44359 1.17774 1.87118 1.20310 1.03068 0.97289 0.90164 1.19103 0.96257 1.01805 1.00930 1.20296 0.94946 0.98339 0.96511 1.20298 0.98704 1.03846 1.03014 1.20666 0.94643 0.98378 0.98946 1.21290 0.95206 1.01356 0.99977 1.17343 0.91719 0.87970 0.90385 1.19490 0.92041 1.38187 0.98725 0.90805 1.25865 1.00553 0.93064 0.94531 1.69830 1.31599 1.34355 1.06411 0.86380 0.80988 0.79117 0.80968 1.18520 1.20037 1.19737 0.91875 0.91625 0.92816 0.90057 0.90557 0.90578 0.88706 0.93284 0.93098 0.77982 0.88611 0.90815 0.89869 0.89729 0.89631 0.86548 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 10.24 37.15 0.38 -1.81 16 2 C 0.11 1.47 5.75 -4.04 -0.02 1.45 16 3 N -0.62 -9.96 2.44 -173.69 -0.42 -10.38 16 4 C 0.12 1.66 5.81 -4.04 -0.02 1.63 16 5 C 0.06 0.73 7.39 37.16 0.27 1.00 16 6 O -0.57 -6.33 12.48 -35.23 -0.44 -6.77 16 7 C 0.52 10.55 7.28 -10.99 -0.08 10.47 16 8 O -0.52 -12.80 15.61 5.56 0.09 -12.71 16 9 C -0.07 -1.41 3.73 -29.03 -0.11 -1.52 16 10 C -0.18 -4.43 4.43 -103.92 -0.46 -4.89 16 11 C -0.08 -1.96 9.66 -39.66 -0.38 -2.34 16 12 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 13 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 14 C -0.16 -4.33 8.69 -38.87 -0.34 -4.67 16 15 C 0.13 3.50 5.56 -106.83 -0.59 2.90 16 16 C -0.45 -12.17 8.14 -37.75 -0.31 -12.47 16 17 H 0.07 1.94 6.67 -52.48 -0.35 1.59 16 18 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 19 N -0.80 -20.83 10.96 55.55 0.61 -20.22 16 20 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 21 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.97 7.22 -51.92 -0.38 0.59 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.97 7.11 -51.93 -0.37 0.60 16 28 H 0.08 0.97 6.44 -51.93 -0.33 0.63 16 29 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.09 1.46 7.42 -51.93 -0.39 1.07 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.37 2.53 9.12 45.56 0.42 2.95 16 34 H 0.10 1.95 6.13 -51.93 -0.32 1.63 16 35 H 0.07 1.31 7.31 -51.93 -0.38 0.93 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 3.25 6.21 -52.48 -0.33 2.92 16 40 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -31.91 331.06 -7.69 -39.60 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.94 Total: 8.91 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -2.54 Total: -17.55 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.19 Total: -30.60 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.35 Total: -19.48 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.91 -7.69 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305802750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.211 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds