Wall clock time and date at job start Mon Mar 30 2020 01:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47410 * 2 1 4 4 C 1.46503 * 119.99848 * 270.00290 * 3 2 1 5 5 C 1.52995 * 109.46793 * 269.99565 * 4 3 2 6 6 O 1.42897 * 109.47332 * 65.00388 * 5 4 3 7 7 C 1.34772 * 120.00055 * 89.99673 * 3 2 1 8 8 O 1.21279 * 120.00013 * 180.02562 * 7 3 2 9 9 C 1.50700 * 120.00225 * 0.02562 * 7 3 2 10 10 C 1.50702 * 109.47409 * 179.97438 * 9 7 3 11 11 C 1.37631 * 120.12519 * 264.99780 * 10 9 7 12 12 C 1.38620 * 120.24499 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.50152 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.24610 * 0.02650 * 13 12 11 15 15 C 1.40695 * 120.12427 * 84.72687 * 10 9 7 16 16 C 1.41394 * 120.25043 * 359.97438 * 15 10 9 17 17 H 1.08007 * 119.99204 * 333.89541 * 16 15 10 18 18 C 1.39936 * 120.00329 * 153.89427 * 16 15 10 19 19 N 1.30823 * 120.00218 * 343.71110 * 18 16 15 20 20 Si 1.86806 * 120.00088 * 163.71342 * 18 16 15 21 21 H 1.48494 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47003 * 120.00050 * 20 18 16 23 23 H 1.48501 * 109.47005 * 240.00090 * 20 18 16 24 24 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47304 * 300.00147 * 1 2 3 26 26 H 1.08999 * 109.47174 * 59.99859 * 1 2 3 27 27 H 1.09000 * 109.47447 * 240.00094 * 2 1 3 28 28 H 1.09000 * 109.47145 * 119.99585 * 2 1 3 29 29 H 1.08998 * 109.47135 * 29.99866 * 4 3 2 30 30 H 1.08998 * 109.46870 * 149.99585 * 4 3 2 31 31 H 1.09004 * 109.46695 * 184.99808 * 5 4 3 32 32 H 1.08999 * 109.47392 * 304.99640 * 5 4 3 33 33 H 0.96700 * 114.00386 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47278 * 299.99744 * 9 7 3 35 35 H 1.09007 * 109.47234 * 59.99400 * 9 7 3 36 36 H 1.07998 * 119.87972 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.74847 * 180.02562 * 12 11 10 38 38 H 1.07996 * 119.87261 * 179.97438 * 13 12 11 39 39 H 1.08007 * 120.12147 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 8 3.8943 0.4433 -1.9935 7 6 2.2429 2.0166 1.1672 8 8 2.6468 3.1602 1.1671 9 6 1.9922 1.3061 2.4723 10 6 2.3192 2.2292 3.6177 11 6 3.5608 2.1826 4.2098 12 6 3.8643 3.0309 5.2632 13 6 2.9232 3.9344 5.7329 14 6 1.6752 3.9976 5.1568 15 6 1.3582 3.1459 4.0822 16 6 0.0815 3.2071 3.4777 17 1 -0.0447 2.8993 2.4501 18 6 -1.0185 3.6664 4.2107 19 7 -0.9523 3.7360 5.5154 20 14 -2.5817 4.1801 3.3262 21 1 -2.4016 4.0074 1.8623 22 1 -3.7123 3.3357 3.7884 23 1 -2.8738 5.6052 3.6247 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 3.9155 2.4162 -2.6064 32 1 4.3863 2.1342 -0.9131 33 1 4.7897 0.2174 -2.2804 34 1 0.9443 1.0116 2.5303 35 1 2.6227 0.4187 2.5299 36 1 4.3016 1.4831 3.8518 37 1 4.8413 2.9878 5.7216 38 1 3.1703 4.5903 6.5544 39 1 0.9435 4.7019 5.5245 40 1 -1.7147 4.0547 6.0235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305802750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:02 Heat of formation + Delta-G solvation = -94.521427 kcal Electronic energy + Delta-G solvation = -22089.795667 eV Core-core repulsion = 18868.078569 eV Total energy + Delta-G solvation = -3221.717098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05726 -39.27112 -37.86237 -36.48814 -35.50076 -33.56409 -32.03821 -31.34751 -29.98261 -28.18486 -26.84347 -24.20833 -23.89884 -22.81461 -21.60337 -19.76920 -19.03151 -18.55630 -17.65221 -17.58814 -17.06768 -16.46408 -16.15130 -15.61052 -15.33889 -15.07993 -14.69991 -14.57433 -14.38891 -14.26983 -13.72636 -13.45898 -13.36259 -13.02522 -12.96453 -12.83132 -12.72530 -12.58103 -12.48735 -12.31020 -12.11529 -11.85534 -11.31095 -11.19523 -11.03784 -11.03040 -10.60689 -9.57496 -9.22578 -9.15733 -8.59546 -6.29070 0.98747 1.13024 1.34356 1.47711 1.51030 1.82324 2.18820 2.19872 2.77920 3.39426 3.69048 3.97612 4.14127 4.17094 4.24633 4.34190 4.39381 4.45467 4.49073 4.57956 4.68944 4.71531 4.77912 4.81500 4.88384 4.98650 5.01812 5.07804 5.19989 5.36521 5.42434 5.54837 5.74102 5.77678 6.04022 6.16993 6.21309 6.42516 6.51785 6.74075 6.88995 6.99825 7.11252 7.39765 8.37163 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.006731 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.782824 B = 4158.943755 C = 5367.254971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 N -0.610 5.610 4 C 0.110 3.890 5 C 0.071 3.929 6 O -0.578 6.578 7 C 0.516 3.484 8 O -0.576 6.576 9 C -0.066 4.066 10 C -0.187 4.187 11 C -0.094 4.094 12 C -0.241 4.241 13 C -0.117 4.117 14 C -0.192 4.192 15 C 0.095 3.905 16 C -0.480 4.480 17 H 0.067 0.933 18 C 0.037 3.963 19 N -0.826 5.826 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.259 1.259 23 H -0.268 1.268 24 H 0.090 0.910 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.394 0.606 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -8.400 -12.949 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.013 4.013 3 N -0.344 5.344 4 C -0.013 4.013 5 C -0.007 4.007 6 O -0.386 6.386 7 C 0.306 3.694 8 O -0.455 6.455 9 C -0.105 4.105 10 C -0.189 4.189 11 C -0.112 4.112 12 C -0.260 4.260 13 C -0.135 4.135 14 C -0.212 4.212 15 C 0.093 3.907 16 C -0.509 4.509 17 H 0.086 0.914 18 C -0.178 4.178 19 N -0.453 5.453 20 Si 0.791 3.209 21 H -0.188 1.188 22 H -0.184 1.184 23 H -0.193 1.193 24 H 0.108 0.892 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.244 0.756 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.781 -7.785 -12.583 15.055 hybrid contribution -0.130 0.729 -0.027 0.741 sum 2.651 -7.056 -12.609 14.690 Atomic orbital electron populations 1.22226 0.95850 1.03294 1.01574 1.21720 0.94209 0.80863 1.04504 1.48060 1.66082 1.15377 1.04854 1.21568 0.96378 0.97923 0.85439 1.22439 0.96224 0.83067 0.99014 1.86396 1.37344 1.24597 1.90314 1.21123 0.75858 0.86181 0.86213 1.90631 1.47166 1.19802 1.87910 1.20285 1.03490 0.97457 0.89255 1.19569 0.96156 1.01473 1.01659 1.20721 0.95270 0.98845 0.96325 1.20711 0.99660 1.02893 1.02738 1.20946 0.94124 0.99056 0.99421 1.21299 0.96125 1.02216 1.01536 1.17738 0.92894 0.88995 0.91087 1.19592 0.92801 1.39955 0.98594 0.91443 1.26640 1.03466 0.92531 0.95113 1.69883 1.32903 1.34823 1.07652 0.85354 0.77277 0.78912 0.79394 1.18754 1.18364 1.19299 0.89162 0.94378 0.92494 0.87992 0.89976 0.88118 0.90752 0.90575 0.95552 0.75593 0.88886 0.87779 0.86818 0.86622 0.87579 0.88470 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 10.24 71.98 0.74 -3.19 16 2 C 0.11 2.58 5.75 86.38 0.50 3.08 16 3 N -0.61 -18.90 2.44 -821.83 -2.00 -20.90 16 4 C 0.11 2.93 5.81 86.38 0.50 3.43 16 5 C 0.07 1.59 7.39 71.98 0.53 2.12 16 6 O -0.58 -10.98 12.48 -148.98 -1.86 -12.84 16 7 C 0.52 21.07 7.28 87.66 0.64 21.71 16 8 O -0.58 -28.83 15.61 -3.03 -0.05 -28.88 16 9 C -0.07 -2.67 3.73 29.10 0.11 -2.56 16 10 C -0.19 -9.32 4.43 -19.41 -0.09 -9.41 16 11 C -0.09 -4.35 9.66 22.22 0.21 -4.14 16 12 C -0.24 -11.23 10.05 22.46 0.23 -11.00 16 13 C -0.12 -5.89 10.02 22.22 0.22 -5.67 16 14 C -0.19 -10.87 8.69 22.73 0.20 -10.67 16 15 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 16 C -0.48 -26.60 8.14 23.46 0.19 -26.41 16 17 H 0.07 3.69 6.67 -2.91 -0.02 3.67 16 18 C 0.04 1.92 5.16 85.25 0.44 2.36 16 19 N -0.83 -44.53 10.96 21.82 0.24 -44.30 16 20 Si 0.97 39.97 29.59 68.60 2.03 42.00 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.04 1.09 7.22 -2.38 -0.02 1.07 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 2.06 7.11 -2.39 -0.02 2.05 16 28 H 0.08 1.86 6.44 -2.39 -0.02 1.85 16 29 H 0.10 2.18 8.07 -2.39 -0.02 2.16 16 30 H 0.07 2.30 7.42 -2.39 -0.02 2.28 16 31 H 0.08 1.29 8.14 -2.38 -0.02 1.28 16 32 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.39 4.04 9.12 -74.06 -0.68 3.37 16 34 H 0.09 3.82 6.13 -2.38 -0.01 3.81 16 35 H 0.10 3.50 7.31 -2.38 -0.02 3.48 16 36 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.10 5.73 6.21 -2.91 -0.02 5.71 16 40 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 Total: -1.00 -71.38 331.06 3.03 -68.35 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.37 Total: 31.67 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.30 Total: -35.10 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -1.76 Total: -65.20 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.91 Total: -41.72 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -71.38 3.03 -68.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305802750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.171 kcal (2) G-P(sol) polarization free energy of solvation -71.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds