Wall clock time and date at job start Mon Mar 30 2020 01:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47194 * 2 1 4 4 C 1.42903 * 114.00296 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.46593 * 60.00517 * 4 3 2 6 6 C 1.52994 * 109.47230 * 300.00557 * 4 3 2 7 7 C 1.50694 * 109.47182 * 180.02562 * 4 3 2 8 8 O 1.21294 * 120.00246 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99983 * 179.97438 * 7 4 3 10 10 C 1.39938 * 120.00022 * 174.40296 * 9 7 4 11 11 C 1.39296 * 119.94652 * 145.35904 * 10 9 7 12 12 C 1.38487 * 120.42692 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.32506 * 0.27197 * 12 11 10 14 14 C 1.40743 * 119.88203 * 359.45569 * 13 12 11 15 15 C 1.41409 * 120.21195 * 180.27061 * 14 13 12 16 16 H 1.07994 * 120.00901 * 214.59288 * 15 14 13 17 17 C 1.39932 * 119.99628 * 34.59343 * 15 14 13 18 18 N 1.30835 * 120.00303 * 5.45214 * 17 15 14 19 19 Si 1.86805 * 120.00027 * 185.45234 * 17 15 14 20 20 H 1.48493 * 109.47058 * 90.00378 * 19 17 15 21 21 H 1.48503 * 109.46984 * 209.99794 * 19 17 15 22 22 H 1.48500 * 109.46976 * 329.99869 * 19 17 15 23 23 C 1.38248 * 119.95014 * 325.33799 * 10 9 7 24 24 H 1.09002 * 109.47017 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46688 * 299.99525 * 1 2 3 26 26 H 1.09006 * 109.47364 * 59.99495 * 1 2 3 27 27 H 1.09000 * 109.47144 * 240.00751 * 2 1 3 28 28 H 1.08992 * 109.47366 * 120.00476 * 2 1 3 29 29 H 1.09003 * 109.46962 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47440 * 299.99944 * 5 4 3 31 31 H 1.08997 * 109.47463 * 60.00427 * 5 4 3 32 32 H 1.09004 * 109.47300 * 299.99698 * 6 4 3 33 33 H 1.08998 * 109.47400 * 59.99599 * 6 4 3 34 34 H 1.08998 * 109.46922 * 179.97438 * 6 4 3 35 35 H 0.96995 * 120.00055 * 354.41017 * 9 7 4 36 36 H 1.07997 * 119.78432 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.83607 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.05851 * 179.70270 * 13 12 11 39 39 H 0.96992 * 120.00185 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.15542 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9966 0.7814 -1.2484 6 6 3.9957 0.7815 1.2500 7 6 3.8194 2.9161 0.0012 8 8 2.9609 3.7730 0.0016 9 7 5.1209 3.2663 0.0023 10 6 5.4833 4.6128 -0.1154 11 6 6.6042 5.0927 0.5582 12 6 6.9722 6.4232 0.4483 13 6 6.2301 7.2882 -0.3241 14 6 5.0983 6.8164 -1.0150 15 6 4.3344 7.6975 -1.8148 16 1 3.2640 7.5726 -1.8850 17 6 4.9655 8.7314 -2.5155 18 7 6.2709 8.8190 -2.5170 19 14 3.9441 9.9865 -3.4488 20 1 3.6207 11.1260 -2.5532 21 1 4.7141 10.4798 -4.6189 22 1 2.6857 9.3516 -3.9163 23 6 4.7285 5.4647 -0.9002 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.0833 0.8670 -1.2478 30 1 3.7156 -0.2718 -1.2485 31 1 3.5943 1.2648 -2.1385 32 1 3.5926 1.2651 2.1399 33 1 3.7147 -0.2716 1.2501 34 1 5.0823 0.8673 1.2502 35 1 5.8064 2.5850 0.0846 36 1 7.1906 4.4225 1.1693 37 1 7.8433 6.7850 0.9744 38 1 6.5182 8.3261 -0.4028 39 1 6.7083 9.5358 -3.0024 40 1 3.8592 5.0936 -1.4227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313444343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:25 Heat of formation + Delta-G solvation = -66.317347 kcal Electronic energy + Delta-G solvation = -21494.515964 eV Core-core repulsion = 18274.021887 eV Total energy + Delta-G solvation = -3220.494078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27067 -38.34827 -36.90974 -34.47874 -33.47448 -32.60762 -30.68252 -29.77929 -28.05658 -27.65103 -25.25584 -24.35225 -22.33251 -21.03932 -20.73744 -19.26820 -17.96733 -16.85823 -16.46809 -15.80658 -15.43414 -15.06068 -14.76028 -14.58253 -14.34726 -13.70974 -13.44305 -12.99034 -12.85000 -12.66657 -12.51809 -12.46665 -12.16939 -12.04941 -11.97689 -11.63556 -11.29536 -11.12439 -11.10316 -11.05175 -10.87266 -10.42000 -10.08001 -9.64401 -9.56353 -9.33954 -9.08773 -8.87414 -7.35755 -6.89782 -6.58759 -4.32556 2.58006 2.86634 3.07581 3.14291 3.18240 3.22707 3.38412 3.96404 4.04377 4.56025 4.72744 4.79927 4.82395 4.95292 5.08695 5.19411 5.25167 5.28015 5.48257 5.56156 5.66579 5.71439 5.77667 5.85000 6.01758 6.02858 6.23343 6.36695 6.75159 6.96787 7.03526 7.09372 7.13993 7.31787 7.58558 7.73744 7.95623 8.14982 8.15926 8.29221 8.67393 8.74716 8.98703 9.01569 10.35662 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.004360 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.690445 B = 6419.856009 C = 7355.629113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.100 3.900 5 C -0.177 4.177 6 C -0.177 4.177 7 C 0.517 3.483 8 O -0.494 6.494 9 N -0.665 5.665 10 C 0.147 3.853 11 C -0.250 4.250 12 C -0.097 4.097 13 C -0.157 4.157 14 C 0.121 3.879 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.812 5.812 19 Si 0.912 3.088 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.200 4.200 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.397 0.603 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.277 0.723 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -16.293 3.548 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.270 6.270 4 C 0.056 3.944 5 C -0.234 4.234 6 C -0.235 4.235 7 C 0.302 3.698 8 O -0.366 6.366 9 N -0.310 5.310 10 C 0.056 3.944 11 C -0.271 4.271 12 C -0.116 4.116 13 C -0.177 4.177 14 C 0.118 3.882 15 C -0.495 4.495 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.439 5.439 19 Si 0.737 3.263 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.222 4.222 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.959 -15.394 3.422 16.045 hybrid contribution 0.249 -0.090 -0.447 0.519 sum -2.710 -15.484 2.975 15.999 Atomic orbital electron populations 1.21724 0.93605 1.01923 1.03503 1.22565 0.95648 0.84376 1.00116 1.88129 1.18120 1.25791 1.94949 1.21310 0.83322 0.93609 0.96109 1.22410 1.02099 1.01131 0.97788 1.22422 1.01958 1.01296 0.97782 1.19915 0.82987 0.89448 0.77467 1.90775 1.49093 1.51018 1.45720 1.43338 1.06553 1.08025 1.73125 1.17433 0.96962 0.81737 0.98310 1.20090 1.01867 0.96404 1.08777 1.20496 0.98620 0.93043 0.99453 1.21374 0.98391 0.99415 0.98507 1.17502 0.91407 0.90207 0.89052 1.19540 0.95416 1.10066 1.24513 0.90477 1.25836 0.95039 0.97327 0.95974 1.69776 1.09127 1.29615 1.35359 0.86253 0.80519 0.80502 0.79049 1.19439 1.20396 1.18707 1.21110 1.03189 0.93670 1.04220 0.91238 0.91751 0.91690 0.93083 0.93144 0.90756 0.91158 0.90826 0.90954 0.91111 0.90852 0.76919 0.89163 0.88896 0.86385 0.91176 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.05 0.52 5.86 37.16 0.22 0.74 16 3 O -0.35 -5.38 9.52 -55.14 -0.52 -5.90 16 4 C 0.10 1.38 0.98 -91.78 -0.09 1.29 16 5 C -0.18 -1.95 8.15 37.15 0.30 -1.65 16 6 C -0.18 -1.84 8.14 37.15 0.30 -1.54 16 7 C 0.52 9.79 6.28 -10.99 -0.07 9.72 16 8 O -0.49 -11.98 14.29 -14.36 -0.21 -12.18 16 9 N -0.66 -12.00 5.11 -9.91 -0.05 -12.05 16 10 C 0.15 3.36 6.25 -83.76 -0.52 2.84 16 11 C -0.25 -5.49 9.97 -39.10 -0.39 -5.88 16 12 C -0.10 -2.27 10.02 -39.69 -0.40 -2.67 16 13 C -0.16 -4.16 8.62 -38.84 -0.33 -4.50 16 14 C 0.12 3.39 5.50 -106.85 -0.59 2.80 16 15 C -0.46 -13.06 9.04 -37.74 -0.34 -13.40 16 16 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 17 C 0.07 1.92 5.31 -17.34 -0.09 1.83 16 18 N -0.81 -21.65 10.98 55.55 0.61 -21.04 16 19 Si 0.91 19.72 29.56 -169.99 -5.03 14.69 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.20 -5.31 8.39 -38.68 -0.32 -5.63 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.46 6.42 -51.93 -0.33 0.13 16 28 H 0.05 0.45 6.41 -51.93 -0.33 0.11 16 29 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 30 H 0.07 0.60 6.54 -51.93 -0.34 0.26 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 34 H 0.07 0.64 7.45 -51.93 -0.39 0.25 16 35 H 0.40 5.46 7.69 -40.82 -0.31 5.14 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.12 3.21 6.49 -52.49 -0.34 2.87 16 39 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.11 2.92 6.51 -52.49 -0.34 2.58 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -32.62 328.30 -7.83 -40.45 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.63 Total: 8.17 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -1.94 Total: -17.09 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.56 Total: -33.09 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.73 Total: -18.08 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.62 -7.83 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313444343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.865 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds