Wall clock time and date at job start Mon Mar 30 2020 01:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47194 * 2 1 4 4 C 1.42903 * 114.00296 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.46593 * 60.00517 * 4 3 2 6 6 C 1.52994 * 109.47230 * 300.00557 * 4 3 2 7 7 C 1.50694 * 109.47182 * 180.02562 * 4 3 2 8 8 O 1.21294 * 120.00246 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99983 * 179.97438 * 7 4 3 10 10 C 1.39938 * 120.00022 * 174.40296 * 9 7 4 11 11 C 1.39296 * 119.94652 * 145.35904 * 10 9 7 12 12 C 1.38487 * 120.42692 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.32506 * 0.27197 * 12 11 10 14 14 C 1.40743 * 119.88203 * 359.45569 * 13 12 11 15 15 C 1.41409 * 120.21195 * 180.27061 * 14 13 12 16 16 H 1.07994 * 120.00901 * 214.59288 * 15 14 13 17 17 C 1.39932 * 119.99628 * 34.59343 * 15 14 13 18 18 N 1.30835 * 120.00303 * 5.45214 * 17 15 14 19 19 Si 1.86805 * 120.00027 * 185.45234 * 17 15 14 20 20 H 1.48493 * 109.47058 * 90.00378 * 19 17 15 21 21 H 1.48503 * 109.46984 * 209.99794 * 19 17 15 22 22 H 1.48500 * 109.46976 * 329.99869 * 19 17 15 23 23 C 1.38248 * 119.95014 * 325.33799 * 10 9 7 24 24 H 1.09002 * 109.47017 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46688 * 299.99525 * 1 2 3 26 26 H 1.09006 * 109.47364 * 59.99495 * 1 2 3 27 27 H 1.09000 * 109.47144 * 240.00751 * 2 1 3 28 28 H 1.08992 * 109.47366 * 120.00476 * 2 1 3 29 29 H 1.09003 * 109.46962 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47440 * 299.99944 * 5 4 3 31 31 H 1.08997 * 109.47463 * 60.00427 * 5 4 3 32 32 H 1.09004 * 109.47300 * 299.99698 * 6 4 3 33 33 H 1.08998 * 109.47400 * 59.99599 * 6 4 3 34 34 H 1.08998 * 109.46922 * 179.97438 * 6 4 3 35 35 H 0.96995 * 120.00055 * 354.41017 * 9 7 4 36 36 H 1.07997 * 119.78432 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.83607 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.05851 * 179.70270 * 13 12 11 39 39 H 0.96992 * 120.00185 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.15542 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9966 0.7814 -1.2484 6 6 3.9957 0.7815 1.2500 7 6 3.8194 2.9161 0.0012 8 8 2.9609 3.7730 0.0016 9 7 5.1209 3.2663 0.0023 10 6 5.4833 4.6128 -0.1154 11 6 6.6042 5.0927 0.5582 12 6 6.9722 6.4232 0.4483 13 6 6.2301 7.2882 -0.3241 14 6 5.0983 6.8164 -1.0150 15 6 4.3344 7.6975 -1.8148 16 1 3.2640 7.5726 -1.8850 17 6 4.9655 8.7314 -2.5155 18 7 6.2709 8.8190 -2.5170 19 14 3.9441 9.9865 -3.4488 20 1 3.6207 11.1260 -2.5532 21 1 4.7141 10.4798 -4.6189 22 1 2.6857 9.3516 -3.9163 23 6 4.7285 5.4647 -0.9002 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.0833 0.8670 -1.2478 30 1 3.7156 -0.2718 -1.2485 31 1 3.5943 1.2648 -2.1385 32 1 3.5926 1.2651 2.1399 33 1 3.7147 -0.2716 1.2501 34 1 5.0823 0.8673 1.2502 35 1 5.8064 2.5850 0.0846 36 1 7.1906 4.4225 1.1693 37 1 7.8433 6.7850 0.9744 38 1 6.5182 8.3261 -0.4028 39 1 6.7083 9.5358 -3.0024 40 1 3.8592 5.0936 -1.4227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313444343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:24 Heat of formation + Delta-G solvation = -87.145443 kcal Electronic energy + Delta-G solvation = -21495.419138 eV Core-core repulsion = 18274.021887 eV Total energy + Delta-G solvation = -3221.397252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68098 -39.73329 -38.59674 -36.24475 -35.06983 -33.91774 -31.75687 -31.57595 -29.83519 -28.47342 -27.26290 -25.49958 -23.60967 -22.81993 -22.27885 -20.73029 -19.68796 -18.38821 -17.66193 -17.31481 -16.74361 -16.64012 -16.48640 -16.06545 -15.81844 -15.01653 -14.73199 -14.62785 -14.29960 -14.00241 -13.58881 -13.50282 -13.39205 -13.28513 -12.99932 -12.93416 -12.91498 -12.84853 -12.82065 -12.20050 -12.12238 -12.08259 -11.84482 -11.48480 -11.19675 -10.88520 -10.55314 -10.54124 -9.34265 -8.77845 -8.54862 -6.42298 0.81056 0.96779 1.35077 1.44274 1.49380 1.71337 1.84391 2.22157 2.76565 2.90465 3.51001 3.66199 3.71586 3.86871 4.17451 4.31598 4.41218 4.44334 4.51280 4.55907 4.58791 4.69994 4.74872 4.89694 4.98519 5.00461 5.06296 5.07321 5.11203 5.17861 5.20550 5.26626 5.31435 5.73089 5.81171 6.03087 6.09613 6.19790 6.33235 6.60487 6.67500 6.92742 6.98621 7.26110 8.40305 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.004360 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.690445 B = 6419.856009 C = 7355.629113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 O -0.395 6.395 4 C 0.105 3.895 5 C -0.173 4.173 6 C -0.172 4.172 7 C 0.509 3.491 8 O -0.559 6.559 9 N -0.649 5.649 10 C 0.152 3.848 11 C -0.234 4.234 12 C -0.094 4.094 13 C -0.181 4.181 14 C 0.089 3.911 15 C -0.511 4.511 16 H 0.058 0.942 17 C 0.036 3.964 18 N -0.837 5.837 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.261 1.261 22 H -0.268 1.268 23 C -0.229 4.229 24 H 0.101 0.899 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.422 0.578 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.287 0.713 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -18.900 4.336 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.034 4.034 3 O -0.315 6.315 4 C 0.062 3.938 5 C -0.231 4.231 6 C -0.229 4.229 7 C 0.297 3.703 8 O -0.435 6.435 9 N -0.297 5.297 10 C 0.059 3.941 11 C -0.255 4.255 12 C -0.113 4.113 13 C -0.201 4.201 14 C 0.087 3.913 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.177 4.177 18 N -0.464 5.464 19 Si 0.804 3.196 20 H -0.184 1.184 21 H -0.185 1.185 22 H -0.193 1.193 23 C -0.250 4.250 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.261 0.739 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.342 -18.065 4.226 18.601 hybrid contribution -0.228 0.573 -0.605 0.864 sum -1.570 -17.492 3.622 17.931 Atomic orbital electron populations 1.21786 0.93425 1.03533 1.02128 1.22875 0.95940 0.82512 1.02037 1.88088 1.19027 1.28965 1.95387 1.21350 0.83421 0.89722 0.99278 1.22442 1.03050 1.02491 0.95091 1.22447 1.03124 1.02502 0.94861 1.21117 0.82280 0.91673 0.75275 1.90750 1.50829 1.53502 1.48442 1.43200 1.07411 1.06726 1.72339 1.17533 0.96319 0.83544 0.96696 1.20568 1.01005 0.96504 1.07438 1.20900 0.98872 0.93327 0.98176 1.21323 0.99099 0.99451 1.00264 1.17815 0.92578 0.90991 0.89930 1.19680 0.94836 1.12609 1.27062 0.92400 1.26617 0.96261 0.98545 0.96244 1.69815 1.10298 1.30410 1.35885 0.85199 0.78561 0.77718 0.78128 1.18379 1.18494 1.19277 1.21039 1.03482 0.94253 1.06262 0.88066 0.92967 0.93281 0.91244 0.90815 0.88799 0.87666 0.93308 0.92497 0.87829 0.88539 0.73925 0.84297 0.85375 0.87953 0.90263 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 10.28 71.98 0.74 -1.96 16 2 C 0.04 0.78 5.86 71.98 0.42 1.20 16 3 O -0.39 -11.91 9.52 -129.94 -1.24 -13.14 16 4 C 0.11 2.73 0.98 -11.55 -0.01 2.72 16 5 C -0.17 -3.36 8.15 71.98 0.59 -2.77 16 6 C -0.17 -2.95 8.14 71.98 0.59 -2.37 16 7 C 0.51 19.36 6.28 87.65 0.55 19.91 16 8 O -0.56 -28.65 14.29 15.96 0.23 -28.42 16 9 N -0.65 -22.58 5.11 -303.64 -1.55 -24.14 16 10 C 0.15 6.92 6.25 38.10 0.24 7.16 16 11 C -0.23 -9.68 9.97 22.58 0.23 -9.46 16 12 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 13 C -0.18 -9.89 8.62 22.75 0.20 -9.70 16 14 C 0.09 5.29 5.50 -21.31 -0.12 5.17 16 15 C -0.51 -30.76 9.04 23.46 0.21 -30.55 16 16 H 0.06 3.54 7.85 -2.91 -0.02 3.51 16 17 C 0.04 1.96 5.31 85.25 0.45 2.41 16 18 N -0.84 -45.93 10.98 21.82 0.24 -45.69 16 19 Si 0.98 41.75 29.56 68.60 2.03 43.78 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 C -0.23 -12.77 8.39 22.85 0.19 -12.58 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.07 1.02 6.42 -2.39 -0.02 1.01 16 28 H 0.07 1.02 6.41 -2.39 -0.02 1.01 16 29 H 0.09 1.43 7.70 -2.39 -0.02 1.41 16 30 H 0.10 1.32 6.54 -2.39 -0.02 1.30 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.13 6.54 -2.39 -0.02 1.11 16 34 H 0.10 1.20 7.45 -2.39 -0.02 1.18 16 35 H 0.42 10.15 7.69 -92.71 -0.71 9.44 16 36 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.10 5.80 6.49 -2.91 -0.02 5.78 16 39 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 40 H 0.08 4.70 6.51 -2.91 -0.02 4.68 16 Total: -1.00 -78.65 328.30 4.54 -74.12 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.34 Total: 28.34 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 4.49 Total: -34.84 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -1.31 Total: -69.83 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.01 Total: -41.57 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -78.65 4.54 -74.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313444343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.029 kcal (2) G-P(sol) polarization free energy of solvation -78.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds