Wall clock time and date at job start Mon Mar 30 2020 01:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47349 * 2 1 4 4 C 1.42897 * 114.00202 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47151 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46982 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47004 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00002 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99773 * 180.02562 * 7 6 5 10 10 C 1.39937 * 119.99938 * 174.89504 * 9 7 6 11 11 C 1.39290 * 119.94881 * 145.78149 * 10 9 7 12 12 C 1.38485 * 120.42887 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.32232 * 359.97438 * 12 11 10 14 14 C 1.40735 * 119.88452 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.21276 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00791 * 205.18240 * 15 14 13 17 17 C 1.39933 * 119.99868 * 25.18125 * 15 14 13 18 18 N 1.30836 * 119.99792 * 16.79589 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 196.79422 * 17 15 14 20 20 H 1.48493 * 109.47338 * 59.99830 * 19 17 15 21 21 H 1.48498 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47067 * 299.99826 * 19 17 15 23 23 C 1.38242 * 119.94603 * 325.50669 * 10 9 7 24 24 H 1.08997 * 109.47060 * 59.99553 * 1 2 3 25 25 H 1.08994 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46729 * 300.00010 * 1 2 3 27 27 H 1.09005 * 109.46729 * 239.99990 * 2 1 3 28 28 H 1.08997 * 109.47060 * 120.00447 * 2 1 3 29 29 H 1.09001 * 109.47324 * 59.99906 * 4 3 2 30 30 H 1.09000 * 109.47000 * 299.99938 * 4 3 2 31 31 H 1.09003 * 109.47148 * 60.00556 * 5 4 3 32 32 H 1.08999 * 109.47609 * 299.99612 * 5 4 3 33 33 H 1.08999 * 109.47621 * 300.00573 * 6 5 4 34 34 H 1.09001 * 109.46655 * 59.99955 * 6 5 4 35 35 H 0.97002 * 120.00257 * 354.88598 * 9 7 6 36 36 H 1.08001 * 119.78822 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.83882 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.05672 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99868 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.16380 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3508 3.0590 -0.0012 7 6 5.7394 4.5150 -0.0024 8 8 4.8809 5.3718 -0.0036 9 7 7.0409 4.8651 -0.0031 10 6 7.4030 6.2124 -0.1121 11 6 8.5312 6.6853 0.5540 12 6 8.8989 8.0166 0.4527 13 6 8.1527 8.8878 -0.3088 14 6 7.0103 8.4244 -0.9875 15 6 6.2386 9.3132 -1.7710 16 1 5.1941 9.1064 -1.9518 17 6 6.8282 10.4611 -2.3123 18 7 8.1312 10.5558 -2.3829 19 14 5.7551 11.8579 -2.9341 20 1 4.9206 12.3748 -1.8199 21 1 6.6164 12.9494 -3.4557 22 1 4.8752 11.3597 -4.0218 23 6 6.6436 7.0707 -0.8852 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8334 0.9766 -0.8908 30 1 3.8341 0.9764 0.8892 31 1 3.4231 3.4221 0.8889 32 1 3.4224 3.4216 -0.8911 33 1 5.7536 2.5758 0.8890 34 1 5.7535 2.5751 -0.8909 35 1 7.7266 4.1832 0.0721 36 1 9.1230 6.0094 1.1534 37 1 9.7758 8.3730 0.9729 38 1 8.4437 9.9251 -0.3852 39 1 8.5400 11.3517 -2.7578 40 1 5.7714 6.7040 -1.4059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313515353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:26 Heat of formation + Delta-G solvation = -101.488963 kcal Electronic energy + Delta-G solvation = -20340.535657 eV Core-core repulsion = 17118.516423 eV Total energy + Delta-G solvation = -3222.019233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24289 -39.22011 -38.84882 -36.23099 -34.90389 -34.74650 -31.97703 -31.76098 -30.17600 -27.61422 -27.20705 -23.73909 -23.66147 -22.80965 -22.22083 -21.00573 -19.51634 -18.27559 -17.48369 -17.37564 -17.36446 -16.78957 -16.52946 -16.35887 -15.51338 -15.26746 -14.97481 -14.79802 -14.50028 -14.01073 -13.67496 -13.52590 -13.50325 -13.01975 -12.93462 -12.79487 -12.75208 -12.49099 -12.41531 -12.19537 -11.96469 -11.87110 -11.76385 -11.53465 -11.16321 -10.87633 -10.63242 -10.51088 -9.40888 -8.75836 -8.61297 -6.38524 0.87141 0.99561 1.34747 1.45915 1.49632 1.83630 2.18515 2.21578 2.72408 2.84315 3.67755 3.76738 3.99649 4.09591 4.18932 4.32283 4.44650 4.47336 4.50020 4.53542 4.54366 4.63004 4.67631 4.88105 5.02576 5.05020 5.08905 5.12160 5.12787 5.24110 5.25901 5.29889 5.33059 5.76371 5.86234 6.06978 6.10384 6.33480 6.34644 6.66667 6.68945 6.92549 7.00257 7.38419 8.31863 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.003191 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.493289 B = 8772.097252 C = 9956.890730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.423 6.423 4 C 0.068 3.932 5 C -0.104 4.104 6 C -0.117 4.117 7 C 0.495 3.505 8 O -0.574 6.574 9 N -0.659 5.659 10 C 0.158 3.842 11 C -0.251 4.251 12 C -0.092 4.092 13 C -0.200 4.200 14 C 0.087 3.913 15 C -0.504 4.504 16 H 0.061 0.939 17 C 0.038 3.962 18 N -0.821 5.821 19 Si 0.981 3.019 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.263 1.263 23 C -0.240 4.240 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.424 0.576 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.290 0.710 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -19.661 4.110 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.343 6.343 4 C -0.008 4.008 5 C -0.142 4.142 6 C -0.156 4.156 7 C 0.285 3.715 8 O -0.452 6.452 9 N -0.305 5.305 10 C 0.064 3.936 11 C -0.272 4.272 12 C -0.111 4.111 13 C -0.220 4.220 14 C 0.085 3.915 15 C -0.534 4.534 16 H 0.079 0.921 17 C -0.177 4.177 18 N -0.447 5.447 19 Si 0.802 3.198 20 H -0.188 1.188 21 H -0.182 1.182 22 H -0.187 1.187 23 C -0.261 4.261 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.262 0.738 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.431 -18.824 4.004 19.749 hybrid contribution -0.052 0.563 -0.446 0.720 sum -4.483 -18.261 3.558 19.137 Atomic orbital electron populations 1.21795 0.93516 1.03360 1.02381 1.22666 0.96026 0.82719 1.01200 1.87880 1.22370 1.28386 1.95684 1.22508 0.80721 0.95570 1.02027 1.21164 0.94339 0.96079 1.02601 1.21538 0.96564 0.89709 1.07821 1.21746 0.81724 0.93275 0.74759 1.90759 1.50696 1.54214 1.49553 1.43425 1.08375 1.06373 1.72355 1.17543 0.95852 0.84030 0.96158 1.20503 1.01424 0.96473 1.08827 1.20860 0.98745 0.93462 0.97988 1.21311 0.99284 0.99573 1.01802 1.17847 0.92304 0.91229 0.90160 1.19709 0.97268 1.06607 1.29804 0.92065 1.26699 0.96497 1.00762 0.93760 1.69852 1.11970 1.28745 1.34146 0.85278 0.78728 0.76754 0.79065 1.18774 1.18240 1.18740 1.20943 1.03910 0.94020 1.07273 0.92790 0.88851 0.92650 0.92243 0.92035 0.91360 0.90954 0.92666 0.93190 0.84783 0.85439 0.73796 0.84805 0.85837 0.87787 0.89947 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.76 6.66 71.98 0.48 1.23 16 3 O -0.42 -9.62 10.34 -148.98 -1.54 -11.16 16 4 C 0.07 1.20 5.94 71.98 0.43 1.63 16 5 C -0.10 -2.50 4.87 30.60 0.15 -2.35 16 6 C -0.12 -2.31 5.70 29.85 0.17 -2.14 16 7 C 0.50 16.88 7.56 87.66 0.66 17.54 16 8 O -0.57 -26.84 13.73 -3.04 -0.04 -26.88 16 9 N -0.66 -21.94 5.34 -303.66 -1.62 -23.56 16 10 C 0.16 7.14 6.25 38.10 0.24 7.37 16 11 C -0.25 -10.58 9.97 22.58 0.23 -10.36 16 12 C -0.09 -4.25 10.02 22.20 0.22 -4.02 16 13 C -0.20 -10.97 8.69 22.75 0.20 -10.77 16 14 C 0.09 5.15 5.57 -21.31 -0.12 5.03 16 15 C -0.50 -29.98 9.05 23.46 0.21 -29.77 16 16 H 0.06 3.67 7.90 -2.91 -0.02 3.64 16 17 C 0.04 2.03 5.16 85.25 0.44 2.47 16 18 N -0.82 -44.52 10.94 21.82 0.24 -44.29 16 19 Si 0.98 40.89 29.59 68.60 2.03 42.92 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 C -0.24 -13.24 8.39 22.85 0.19 -13.05 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 32 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.42 9.57 8.82 -92.71 -0.82 8.75 16 36 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 38 H 0.10 5.90 6.17 -2.91 -0.02 5.89 16 39 H 0.29 14.07 8.30 -92.71 -0.77 13.31 16 40 H 0.08 4.79 6.48 -2.91 -0.02 4.77 16 Total: -1.00 -76.73 338.62 3.52 -73.21 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.21 Total: 28.31 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 4.24 Total: -38.57 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -1.38 Total: -67.85 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.58 Total: -38.04 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -76.73 3.52 -73.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313515353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.275 kcal (2) G-P(sol) polarization free energy of solvation -76.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds