Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99954 * 2 1 4 4 C 1.52991 * 109.47017 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47026 * 65.00077 * 4 3 2 6 6 C 1.37098 * 119.99859 * 269.99782 * 5 4 3 7 7 H 1.08002 * 119.99490 * 145.14214 * 6 5 4 8 8 C 1.38944 * 120.00136 * 325.14264 * 6 5 4 9 9 N 1.31414 * 120.00099 * 337.44232 * 8 6 5 10 10 Si 1.86794 * 120.00207 * 157.44163 * 8 6 5 11 11 H 1.48504 * 109.47062 * 59.99726 * 10 8 6 12 12 H 1.48497 * 109.47577 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47117 * 300.00136 * 10 8 6 14 14 C 1.34782 * 119.99740 * 89.99683 * 5 4 3 15 15 O 1.21286 * 120.00300 * 4.90274 * 14 5 4 16 16 C 1.50701 * 119.99589 * 184.89813 * 14 5 4 17 17 C 1.53002 * 109.47158 * 177.65879 * 16 14 5 18 18 C 1.50692 * 109.47309 * 180.02562 * 17 16 14 19 19 C 1.38236 * 120.00545 * 90.00094 * 18 17 16 20 20 C 1.38225 * 120.00463 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99972 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.00371 * 0.28036 * 21 20 19 23 23 C 1.38240 * 119.99412 * 359.50871 * 22 21 20 24 24 H 1.09003 * 109.47034 * 300.00163 * 1 2 3 25 25 H 1.09002 * 109.47012 * 59.99878 * 1 2 3 26 26 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47143 * 59.99656 * 3 2 1 28 28 H 1.08999 * 109.46659 * 300.00229 * 3 2 1 29 29 H 1.08999 * 109.47502 * 304.99895 * 4 3 2 30 30 H 1.09004 * 109.47397 * 184.99472 * 4 3 2 31 31 H 0.96997 * 120.00101 * 185.02196 * 9 8 6 32 32 H 1.09004 * 109.46812 * 57.66336 * 16 14 5 33 33 H 1.08995 * 109.47718 * 297.66710 * 16 14 5 34 34 H 1.09001 * 109.46306 * 60.00028 * 17 16 14 35 35 H 1.09002 * 109.46969 * 300.00540 * 17 16 14 36 36 H 1.07999 * 119.99292 * 359.97438 * 19 18 17 37 37 H 1.07999 * 120.00537 * 179.97438 * 20 19 18 38 38 H 1.08009 * 120.00074 * 180.02562 * 21 20 19 39 39 H 1.07994 * 120.00237 * 179.72786 * 22 21 20 40 40 H 1.07994 * 120.00249 * 180.27693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0979 -0.7991 -1.3346 7 1 3.8651 -1.3061 -2.2593 8 6 4.5204 -1.5281 -0.2298 9 7 5.2120 -0.9398 0.7203 10 14 4.1053 -3.3443 -0.0948 11 1 4.6891 -4.0727 -1.2498 12 1 4.6670 -3.8881 1.1677 13 1 2.6303 -3.5164 -0.0954 14 6 4.2633 1.3330 -2.3201 15 8 4.2421 2.5416 -2.2210 16 6 4.6101 0.6910 -3.6387 17 6 4.8329 1.7780 -4.6921 18 6 5.1791 1.1360 -6.0108 19 6 4.1761 0.8026 -6.9018 20 6 4.4937 0.2142 -8.1116 21 6 5.8144 -0.0402 -8.4308 22 6 6.8171 0.2884 -7.5377 23 6 6.4998 0.8807 -6.3297 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9785 2.1766 0.0901 31 1 5.5692 -1.4628 1.4550 32 1 3.7924 0.0424 -3.9532 33 1 5.5196 0.1008 -3.5274 34 1 5.6505 2.4265 -4.3775 35 1 3.9232 2.3681 -4.8034 36 1 3.1443 1.0018 -6.6525 37 1 3.7101 -0.0467 -8.8075 38 1 6.0626 -0.4996 -9.3763 39 1 7.8485 0.0855 -7.7853 40 1 7.2834 1.1416 -5.6338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316800313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = -59.212960 kcal Electronic energy + Delta-G solvation = -21474.449004 eV Core-core repulsion = 18254.262996 eV Total energy + Delta-G solvation = -3220.186008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.21762 -38.48722 -36.94093 -34.72038 -33.43832 -31.51440 -30.71741 -29.89551 -28.50592 -25.81911 -24.80779 -24.00377 -22.38584 -21.71504 -20.46218 -18.93531 -16.82683 -16.61360 -16.06373 -15.43210 -15.33545 -15.09503 -14.82335 -14.38112 -14.30099 -14.08045 -13.76200 -13.24089 -13.06033 -12.71002 -12.41085 -12.08166 -11.94957 -11.48914 -11.32053 -11.11831 -11.04856 -10.93721 -10.87242 -10.72185 -10.49740 -10.32765 -10.24779 -9.99631 -9.10429 -8.94108 -8.75781 -8.57649 -8.26276 -7.43261 -6.27483 -3.90430 1.54498 1.56512 3.21323 3.28992 3.34901 3.93811 3.95792 4.22801 4.54631 4.78751 5.04178 5.07160 5.12787 5.21285 5.33794 5.62521 5.67788 5.70018 5.74147 5.85172 5.89921 5.96957 6.01352 6.07948 6.15855 6.20356 6.35462 6.36175 6.50195 6.57407 6.63668 6.65235 6.80162 6.82730 6.97052 7.19527 7.33576 7.57623 7.86374 8.06086 8.44905 9.18913 9.59188 10.00708 10.75749 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.004943 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.959424 B = 5663.257103 C = 6237.735958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.107 3.893 5 N -0.429 5.429 6 C -0.324 4.324 7 H 0.087 0.913 8 C 0.052 3.948 9 N -0.866 5.866 10 Si 0.915 3.085 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.466 3.534 15 O -0.614 6.614 16 C -0.109 4.109 17 C -0.066 4.066 18 C -0.068 4.068 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.120 4.120 23 C -0.117 4.117 24 H 0.029 0.971 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.269 0.731 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 0.445 -9.622 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.017 4.017 5 N -0.146 5.146 6 C -0.452 4.452 7 H 0.104 0.896 8 C -0.154 4.154 9 N -0.503 5.503 10 Si 0.742 3.258 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.196 1.196 14 C 0.255 3.745 15 O -0.502 6.502 16 C -0.149 4.149 17 C -0.104 4.104 18 C -0.068 4.068 19 C -0.137 4.137 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.135 0.865 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.528 0.804 -9.315 9.685 hybrid contribution -0.494 -0.886 0.169 1.029 sum -3.023 -0.082 -9.146 9.633 Atomic orbital electron populations 1.22645 0.83619 1.01682 0.98747 1.88172 1.17179 1.27606 1.94987 1.23025 0.96619 0.84331 0.98344 1.21525 0.89191 0.99244 0.91698 1.43344 1.55870 1.06299 1.09119 1.19233 1.45615 0.80626 0.99749 0.89561 1.25197 0.94368 0.99790 0.96021 1.69807 1.30668 1.36897 1.12921 0.86207 0.79400 0.82779 0.77451 1.20125 1.21210 1.19597 1.20418 0.80407 0.86711 0.86954 1.90501 1.58945 1.14749 1.85973 1.21291 1.03215 0.97845 0.92587 1.20395 1.02833 0.97214 0.89922 1.20137 0.93206 0.97340 0.96124 1.21094 0.99184 0.99419 0.93993 1.21091 0.96336 0.99535 0.96955 1.21060 0.93173 1.01454 0.99559 1.21113 0.99065 0.99240 0.94416 1.21132 0.96210 0.99346 0.96807 0.95231 0.95045 0.90496 0.94377 0.94480 0.86501 0.91070 0.92073 0.90489 0.89548 0.90608 0.90967 0.86180 0.86486 0.86627 0.86417 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.84 10.18 -35.23 -0.36 -8.20 16 3 C 0.05 1.15 6.28 37.15 0.23 1.38 16 4 C 0.11 2.60 5.47 -4.04 -0.02 2.58 16 5 N -0.43 -10.88 2.52 -114.81 -0.29 -11.17 16 6 C -0.32 -8.35 8.23 -14.94 -0.12 -8.47 16 7 H 0.09 2.15 6.96 -52.49 -0.37 1.79 16 8 C 0.05 1.33 4.95 -17.47 -0.09 1.24 16 9 N -0.87 -23.20 11.34 55.50 0.63 -22.57 16 10 Si 0.91 20.34 29.61 -169.99 -5.03 15.30 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 C 0.47 11.31 7.62 -10.98 -0.08 11.23 16 15 O -0.61 -16.00 15.54 5.55 0.09 -15.91 16 16 C -0.11 -2.20 4.31 -27.88 -0.12 -2.32 16 17 C -0.07 -1.15 4.64 -27.89 -0.13 -1.28 16 18 C -0.07 -1.04 5.13 -104.63 -0.54 -1.58 16 19 C -0.12 -1.66 9.70 -39.59 -0.38 -2.05 16 20 C -0.12 -1.50 10.05 -39.59 -0.40 -1.89 16 21 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 23 C -0.12 -1.67 9.70 -39.58 -0.38 -2.05 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.12 3.05 5.37 -51.93 -0.28 2.77 16 30 H 0.07 1.73 7.36 -51.93 -0.38 1.35 16 31 H 0.27 6.85 8.32 -40.82 -0.34 6.52 16 32 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 33 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 34 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 35 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -29.93 338.56 -7.62 -37.56 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.04 Total: 5.40 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.72 Total: -5.50 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.34 Total: -33.74 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.27 Total: -24.12 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.93 -7.62 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316800313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.655 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds