Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99954 * 2 1 4 4 C 1.52991 * 109.47017 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47026 * 65.00077 * 4 3 2 6 6 C 1.37098 * 119.99859 * 269.99782 * 5 4 3 7 7 H 1.08002 * 119.99490 * 145.14214 * 6 5 4 8 8 C 1.38944 * 120.00136 * 325.14264 * 6 5 4 9 9 N 1.31414 * 120.00099 * 337.44232 * 8 6 5 10 10 Si 1.86794 * 120.00207 * 157.44163 * 8 6 5 11 11 H 1.48504 * 109.47062 * 59.99726 * 10 8 6 12 12 H 1.48497 * 109.47577 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47117 * 300.00136 * 10 8 6 14 14 C 1.34782 * 119.99740 * 89.99683 * 5 4 3 15 15 O 1.21286 * 120.00300 * 4.90274 * 14 5 4 16 16 C 1.50701 * 119.99589 * 184.89813 * 14 5 4 17 17 C 1.53002 * 109.47158 * 177.65879 * 16 14 5 18 18 C 1.50692 * 109.47309 * 180.02562 * 17 16 14 19 19 C 1.38236 * 120.00545 * 90.00094 * 18 17 16 20 20 C 1.38225 * 120.00463 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99972 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.00371 * 0.28036 * 21 20 19 23 23 C 1.38240 * 119.99412 * 359.50871 * 22 21 20 24 24 H 1.09003 * 109.47034 * 300.00163 * 1 2 3 25 25 H 1.09002 * 109.47012 * 59.99878 * 1 2 3 26 26 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47143 * 59.99656 * 3 2 1 28 28 H 1.08999 * 109.46659 * 300.00229 * 3 2 1 29 29 H 1.08999 * 109.47502 * 304.99895 * 4 3 2 30 30 H 1.09004 * 109.47397 * 184.99472 * 4 3 2 31 31 H 0.96997 * 120.00101 * 185.02196 * 9 8 6 32 32 H 1.09004 * 109.46812 * 57.66336 * 16 14 5 33 33 H 1.08995 * 109.47718 * 297.66710 * 16 14 5 34 34 H 1.09001 * 109.46306 * 60.00028 * 17 16 14 35 35 H 1.09002 * 109.46969 * 300.00540 * 17 16 14 36 36 H 1.07999 * 119.99292 * 359.97438 * 19 18 17 37 37 H 1.07999 * 120.00537 * 179.97438 * 20 19 18 38 38 H 1.08009 * 120.00074 * 180.02562 * 21 20 19 39 39 H 1.07994 * 120.00237 * 179.72786 * 22 21 20 40 40 H 1.07994 * 120.00249 * 180.27693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0979 -0.7991 -1.3346 7 1 3.8651 -1.3061 -2.2593 8 6 4.5204 -1.5281 -0.2298 9 7 5.2120 -0.9398 0.7203 10 14 4.1053 -3.3443 -0.0948 11 1 4.6891 -4.0727 -1.2498 12 1 4.6670 -3.8881 1.1677 13 1 2.6303 -3.5164 -0.0954 14 6 4.2633 1.3330 -2.3201 15 8 4.2421 2.5416 -2.2210 16 6 4.6101 0.6910 -3.6387 17 6 4.8329 1.7780 -4.6921 18 6 5.1791 1.1360 -6.0108 19 6 4.1761 0.8026 -6.9018 20 6 4.4937 0.2142 -8.1116 21 6 5.8144 -0.0402 -8.4308 22 6 6.8171 0.2884 -7.5377 23 6 6.4998 0.8807 -6.3297 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9785 2.1766 0.0901 31 1 5.5692 -1.4628 1.4550 32 1 3.7924 0.0424 -3.9532 33 1 5.5196 0.1008 -3.5274 34 1 5.6505 2.4265 -4.3775 35 1 3.9232 2.3681 -4.8034 36 1 3.1443 1.0018 -6.6525 37 1 3.7101 -0.0467 -8.8075 38 1 6.0626 -0.4996 -9.3763 39 1 7.8485 0.0855 -7.7853 40 1 7.2834 1.1416 -5.6338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316800313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = -75.281860 kcal Electronic energy + Delta-G solvation = -21475.145804 eV Core-core repulsion = 18254.262996 eV Total energy + Delta-G solvation = -3220.882808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70332 -39.93931 -38.56626 -36.61376 -34.82680 -33.48785 -31.71020 -31.48038 -29.96226 -27.28963 -26.65714 -25.50634 -23.38751 -23.33779 -21.72257 -20.86032 -18.64945 -18.07070 -17.43482 -17.16160 -16.90616 -16.48426 -16.20575 -16.05365 -15.80796 -15.66754 -15.28160 -14.64120 -14.23369 -13.91193 -13.85730 -13.63561 -13.47828 -13.24441 -12.92598 -12.85603 -12.67490 -12.48745 -12.36011 -12.10490 -12.08973 -11.79608 -11.78800 -11.65298 -11.01031 -10.53082 -10.33208 -9.75978 -9.52450 -9.41403 -8.23672 -5.92323 0.50576 0.56208 1.43648 1.51620 1.58727 2.03401 2.37538 2.86205 3.00010 3.06050 3.23488 3.92637 3.99112 4.22744 4.24063 4.30513 4.33638 4.36482 4.37381 4.51653 4.53784 4.61378 4.63460 4.70375 4.72644 4.75851 4.82513 4.97303 5.06627 5.16485 5.25758 5.29561 5.37893 5.58217 5.64190 5.67220 5.82780 6.04000 6.19429 6.42450 6.46657 7.20470 7.64319 8.05658 8.80012 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.004943 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.959424 B = 5663.257103 C = 6237.735958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.066 3.934 4 C 0.104 3.896 5 N -0.440 5.440 6 C -0.335 4.335 7 H 0.091 0.909 8 C 0.012 3.988 9 N -0.896 5.896 10 Si 0.976 3.024 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.452 3.548 15 O -0.638 6.638 16 C -0.097 4.097 17 C -0.052 4.052 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.133 4.133 24 H 0.051 0.949 25 H 0.041 0.959 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.270 0.730 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -1.067 -11.367 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C -0.011 4.011 4 C -0.020 4.020 5 N -0.157 5.157 6 C -0.463 4.463 7 H 0.109 0.891 8 C -0.190 4.190 9 N -0.534 5.534 10 Si 0.800 3.200 11 H -0.189 1.189 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.243 3.757 15 O -0.528 6.528 16 C -0.136 4.136 17 C -0.090 4.090 18 C -0.089 4.089 19 C -0.149 4.149 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.141 4.141 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.279 -0.709 -11.067 11.564 hybrid contribution -0.272 -0.387 0.686 0.833 sum -3.550 -1.096 -10.382 11.026 Atomic orbital electron populations 1.22887 0.80793 1.03220 1.00292 1.88097 1.20310 1.27661 1.95279 1.22791 0.94342 0.84665 0.99312 1.21483 0.91670 0.97937 0.90936 1.43585 1.55966 1.06546 1.09594 1.19462 1.45734 0.80878 1.00213 0.89124 1.25952 0.93903 1.03625 0.95532 1.69914 1.31577 1.38397 1.13494 0.85263 0.78875 0.78164 0.77680 1.18924 1.21057 1.19632 1.21153 0.79833 0.86613 0.88139 1.90467 1.59922 1.15806 1.86588 1.21208 1.02919 0.98381 0.91132 1.20192 1.01978 0.96205 0.90649 1.19974 0.94304 0.99165 0.95486 1.21256 0.99146 0.99820 0.94649 1.21436 0.97546 0.98489 0.96533 1.21489 0.92718 1.00200 1.00434 1.21430 1.00712 0.98356 0.93618 1.21265 0.95775 1.00126 0.97940 0.93024 0.94074 0.89031 0.91622 0.95078 0.88361 0.92350 0.92009 0.89807 0.90056 0.91988 0.91596 0.85720 0.83787 0.83497 0.84022 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.82 10.18 -148.98 -1.52 -18.33 16 3 C 0.07 2.80 6.28 71.98 0.45 3.25 16 4 C 0.10 5.16 5.47 86.37 0.47 5.63 16 5 N -0.44 -22.81 2.52 -635.54 -1.60 -24.41 16 6 C -0.34 -17.39 8.23 84.04 0.69 -16.70 16 7 H 0.09 4.52 6.96 -2.91 -0.02 4.50 16 8 C 0.01 0.64 4.95 84.92 0.42 1.06 16 9 N -0.90 -48.72 11.34 21.66 0.25 -48.48 16 10 Si 0.98 41.31 29.61 68.60 2.03 43.34 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 12 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 14 C 0.45 22.59 7.62 87.66 0.67 23.26 16 15 O -0.64 -34.39 15.54 -3.05 -0.05 -34.43 16 16 C -0.10 -3.97 4.31 29.85 0.13 -3.84 16 17 C -0.05 -1.88 4.64 29.85 0.14 -1.74 16 18 C -0.09 -2.72 5.13 -19.87 -0.10 -2.82 16 19 C -0.13 -3.50 9.70 22.27 0.22 -3.28 16 20 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 21 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 22 C -0.12 -2.80 10.05 22.27 0.22 -2.58 16 23 C -0.13 -3.71 9.70 22.27 0.22 -3.49 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 5.28 5.37 -2.39 -0.01 5.27 16 30 H 0.06 2.96 7.36 -2.38 -0.02 2.95 16 31 H 0.27 13.94 8.32 -92.71 -0.77 13.17 16 32 H 0.08 3.29 7.68 -2.39 -0.02 3.27 16 33 H 0.08 3.40 8.10 -2.39 -0.02 3.38 16 34 H 0.06 2.34 8.02 -2.39 -0.02 2.32 16 35 H 0.07 2.39 8.06 -2.39 -0.02 2.37 16 36 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16 37 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -64.73 338.56 5.34 -59.39 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 1.01 Total: 27.07 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.22 Total: -4.14 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.36 Total: -72.89 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -1.56 Total: -52.77 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -64.73 5.34 -59.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316800313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.893 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds