Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 117.00352 * 2 1 4 4 C 1.38566 * 120.16258 * 0.02562 * 3 2 1 5 5 C 1.38029 * 119.87319 * 180.02562 * 4 3 2 6 6 C 1.38755 * 120.54947 * 359.97347 * 5 4 3 7 7 C 1.37876 * 119.82466 * 359.85563 * 6 5 4 8 8 C 1.38968 * 120.16483 * 179.97438 * 3 2 1 9 9 O 1.35990 * 119.90075 * 0.04952 * 8 3 2 10 10 C 1.42905 * 116.99528 * 275.30994 * 9 8 3 11 11 C 1.50724 * 121.67171 * 180.48058 * 7 6 5 12 12 C 1.52896 * 109.95130 * 342.99965 * 11 7 6 13 13 N 1.47157 * 108.48942 * 50.44492 * 12 11 7 14 14 C 1.46907 * 111.00216 * 52.15367 * 13 12 11 15 15 C 1.50704 * 109.46889 * 53.02734 * 14 13 12 16 16 H 1.08007 * 119.99913 * 5.18246 * 15 14 13 17 17 C 1.37871 * 120.00125 * 185.18272 * 15 14 13 18 18 N 1.31520 * 119.99804 * 5.76362 * 17 15 14 19 19 Si 1.86804 * 120.00290 * 185.76558 * 17 15 14 20 20 H 1.48503 * 109.46886 * 64.99058 * 19 17 15 21 21 H 1.48500 * 109.47179 * 184.99756 * 19 17 15 22 22 H 1.48504 * 109.46678 * 304.99513 * 19 17 15 23 23 C 1.46621 * 110.26821 * 288.72314 * 13 12 11 24 24 H 1.09000 * 109.47141 * 300.00175 * 1 2 3 25 25 H 1.09007 * 109.46513 * 59.99872 * 1 2 3 26 26 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.06503 * 0.04339 * 4 3 2 28 28 H 1.07998 * 119.72744 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47042 * 185.03232 * 10 9 8 30 30 H 1.08999 * 109.47154 * 305.02944 * 10 9 8 31 31 H 1.09003 * 109.47321 * 65.03953 * 10 9 8 32 32 H 1.08997 * 109.39198 * 103.15292 * 11 7 6 33 33 H 1.09000 * 109.38659 * 222.95262 * 11 7 6 34 34 H 1.09004 * 109.62904 * 170.14907 * 12 11 7 35 35 H 1.09003 * 109.63412 * 290.74202 * 12 11 7 36 36 H 1.08989 * 109.47265 * 173.02418 * 14 13 12 37 37 H 1.08999 * 109.47185 * 293.02822 * 14 13 12 38 38 H 0.97001 * 119.99860 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.27111 * 292.25706 * 23 13 12 40 40 H 1.09004 * 109.26976 * 172.78358 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2952 2.3760 0.0005 5 6 1.9281 3.6027 0.0000 6 6 3.3134 3.6815 -0.0005 7 6 4.0660 2.5262 0.0025 8 6 3.4341 1.2884 0.0005 9 8 4.1760 0.1487 0.0000 10 6 4.4306 -0.4601 1.2676 11 6 5.5727 2.5633 0.0128 12 6 6.0633 3.9509 -0.4015 13 7 5.3566 4.9566 0.4076 14 6 5.4653 4.6507 1.8403 15 6 6.9160 4.4711 2.2070 16 1 7.6856 4.6558 1.4721 17 6 7.2607 4.0711 3.4806 18 7 6.3239 3.7370 4.3411 19 14 9.0584 4.0037 3.9840 20 1 9.6270 5.3756 3.9740 21 1 9.1688 3.4319 5.3500 22 1 9.8084 3.1501 3.0279 23 6 3.9527 5.0457 -0.0056 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 0.2165 2.3239 0.0017 28 1 1.3402 4.5086 0.0000 29 1 5.1045 -1.3066 1.1353 30 1 4.8900 0.2690 1.9351 31 1 3.4918 -0.8071 1.6992 32 1 5.9335 2.3365 1.0161 33 1 5.9577 1.8212 -0.6865 34 1 7.1364 4.0275 -0.2258 35 1 5.8497 4.1146 -1.4578 36 1 5.0430 5.4713 2.4201 37 1 4.9192 3.7329 2.0583 38 1 6.5664 3.4559 5.2372 39 1 3.8993 5.4642 -1.0106 40 1 3.4155 5.6971 0.6837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336734044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = -40.693947 kcal Electronic energy + Delta-G solvation = -22509.186644 eV Core-core repulsion = 19289.803681 eV Total energy + Delta-G solvation = -3219.382964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56441 -38.65161 -37.61783 -35.70876 -32.65362 -31.62706 -30.10671 -28.96771 -27.51361 -26.94434 -26.16520 -23.74171 -23.35957 -21.56559 -21.46468 -18.79976 -17.69206 -16.74143 -16.58574 -16.15269 -15.87794 -15.06354 -14.91109 -14.59649 -14.45658 -14.05107 -13.65774 -13.56956 -13.31296 -12.87232 -12.34601 -12.17843 -11.95367 -11.80831 -11.66049 -11.58799 -11.16104 -11.07509 -10.80441 -10.60118 -10.55681 -10.45610 -10.05219 -9.86372 -9.61594 -9.09982 -8.48321 -8.22218 -7.71133 -7.22381 -6.04330 -4.05089 1.46267 1.64968 3.32357 3.33186 3.36978 3.39785 3.70017 4.28713 4.41955 4.91628 5.02577 5.07834 5.10419 5.20542 5.31400 5.36990 5.43771 5.50527 5.65309 5.71974 5.74012 5.77686 5.88805 5.97810 6.03780 6.14431 6.24871 6.37309 6.47617 6.58481 6.72500 6.80981 6.97067 7.05119 7.33061 7.33927 7.49953 7.77133 7.93719 8.04458 8.18490 8.55483 9.02816 9.58707 11.06286 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.005889 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.543737 B = 4753.843690 C = 5331.366932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.099 3.901 4 C -0.207 4.207 5 C -0.083 4.083 6 C -0.128 4.128 7 C -0.031 4.031 8 C 0.059 3.941 9 O -0.326 6.326 10 C 0.036 3.964 11 C -0.114 4.114 12 C 0.069 3.931 13 N -0.530 5.530 14 C 0.186 3.814 15 C -0.511 4.511 16 H 0.063 0.937 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.276 1.276 23 C 0.095 3.905 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.007 0.993 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 -5.334 -8.395 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.053 3.947 4 C -0.226 4.226 5 C -0.102 4.102 6 C -0.130 4.130 7 C -0.032 4.032 8 C 0.014 3.986 9 O -0.242 6.242 10 C -0.059 4.059 11 C -0.152 4.152 12 C -0.059 4.059 13 N -0.251 5.251 14 C 0.061 3.939 15 C -0.550 4.550 16 H 0.082 0.918 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.034 4.034 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.846 -5.200 -8.419 13.959 hybrid contribution -0.026 -0.790 0.931 1.221 sum -9.873 -5.990 -7.488 13.762 Atomic orbital electron populations 1.23008 0.79166 1.03470 1.01124 1.86128 1.20659 1.26652 1.89029 1.19313 0.91604 0.84589 0.99153 1.20952 0.99462 0.92026 1.10142 1.20879 0.93957 0.96858 0.98465 1.20439 0.93374 0.97039 1.02146 1.19798 0.97072 0.90397 0.95946 1.17880 0.86000 0.86550 1.08129 1.85998 1.70950 1.37583 1.29689 1.22952 1.00249 0.97633 0.85058 1.21062 0.89454 1.00165 1.04497 1.21993 1.00232 0.88193 0.95500 1.62757 1.08296 1.46367 1.07723 1.19819 0.97361 0.95589 0.81156 1.21148 0.91957 1.45171 0.96713 0.91848 1.24962 0.97380 0.95285 0.96680 1.69970 1.32437 1.45138 1.05926 0.86634 0.85283 0.78431 0.77543 1.20221 1.21446 1.20145 1.21087 0.90387 0.91163 1.00792 0.92892 0.92898 0.88590 0.85600 0.85793 0.89348 0.92896 0.93961 0.87887 0.90947 0.89495 0.92877 0.95853 0.97499 0.92929 0.90718 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.82 101.05 0.99 1.27 16 2 O -0.31 -4.81 10.28 -34.44 -0.35 -5.16 16 3 C 0.10 1.68 6.69 -39.19 -0.26 1.42 16 4 C -0.21 -3.10 9.04 -39.54 -0.36 -3.46 16 5 C -0.08 -1.29 9.64 -39.47 -0.38 -1.67 16 6 C -0.13 -2.32 5.24 -104.59 -0.55 -2.87 16 7 C -0.03 -0.61 5.06 -104.47 -0.53 -1.14 16 8 C 0.06 1.12 5.70 -39.04 -0.22 0.89 16 9 O -0.33 -6.08 9.32 -34.40 -0.32 -6.40 16 10 C 0.04 0.58 11.13 101.05 1.12 1.70 16 11 C -0.11 -2.27 4.73 -27.92 -0.13 -2.40 16 12 C 0.07 1.36 5.52 -3.74 -0.02 1.34 16 13 N -0.53 -11.32 5.11 -237.63 -1.22 -12.54 16 14 C 0.19 4.74 4.15 -4.97 -0.02 4.71 16 15 C -0.51 -13.86 7.74 -34.44 -0.27 -14.12 16 16 H 0.06 1.69 6.44 -52.48 -0.34 1.35 16 17 C 0.06 1.62 5.45 -17.82 -0.10 1.52 16 18 N -0.90 -26.08 13.28 55.43 0.74 -25.35 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.09 1.71 5.54 -5.15 -0.03 1.68 16 24 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 25 H 0.05 0.47 7.67 -51.93 -0.40 0.08 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.13 1.48 6.32 -52.49 -0.33 1.15 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 2.39 6.44 -51.93 -0.33 2.06 16 33 H 0.07 1.34 7.84 -51.93 -0.41 0.93 16 34 H 0.09 1.78 6.50 -51.93 -0.34 1.44 16 35 H 0.05 0.92 8.05 -51.93 -0.42 0.51 16 36 H 0.02 0.64 8.14 -51.94 -0.42 0.22 16 37 H 0.01 0.20 5.77 -51.93 -0.30 -0.10 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -30.89 320.27 -7.87 -38.77 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.78 Total: 0.75 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.75 Total: -11.12 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.48 Total: -37.88 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.67 Total: -11.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.89 -7.87 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336734044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.928 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds