Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 117.00352 * 2 1 4 4 C 1.38566 * 120.16258 * 0.02562 * 3 2 1 5 5 C 1.38029 * 119.87319 * 180.02562 * 4 3 2 6 6 C 1.38755 * 120.54947 * 359.97347 * 5 4 3 7 7 C 1.37876 * 119.82466 * 359.85563 * 6 5 4 8 8 C 1.38968 * 120.16483 * 179.97438 * 3 2 1 9 9 O 1.35990 * 119.90075 * 0.04952 * 8 3 2 10 10 C 1.42905 * 116.99528 * 275.30994 * 9 8 3 11 11 C 1.50724 * 121.67171 * 180.48058 * 7 6 5 12 12 C 1.52896 * 109.95130 * 342.99965 * 11 7 6 13 13 N 1.47157 * 108.48942 * 50.44492 * 12 11 7 14 14 C 1.46907 * 111.00216 * 52.15367 * 13 12 11 15 15 C 1.50704 * 109.46889 * 53.02734 * 14 13 12 16 16 H 1.08007 * 119.99913 * 5.18246 * 15 14 13 17 17 C 1.37871 * 120.00125 * 185.18272 * 15 14 13 18 18 N 1.31520 * 119.99804 * 5.76362 * 17 15 14 19 19 Si 1.86804 * 120.00290 * 185.76558 * 17 15 14 20 20 H 1.48503 * 109.46886 * 64.99058 * 19 17 15 21 21 H 1.48500 * 109.47179 * 184.99756 * 19 17 15 22 22 H 1.48504 * 109.46678 * 304.99513 * 19 17 15 23 23 C 1.46621 * 110.26821 * 288.72314 * 13 12 11 24 24 H 1.09000 * 109.47141 * 300.00175 * 1 2 3 25 25 H 1.09007 * 109.46513 * 59.99872 * 1 2 3 26 26 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.06503 * 0.04339 * 4 3 2 28 28 H 1.07998 * 119.72744 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47042 * 185.03232 * 10 9 8 30 30 H 1.08999 * 109.47154 * 305.02944 * 10 9 8 31 31 H 1.09003 * 109.47321 * 65.03953 * 10 9 8 32 32 H 1.08997 * 109.39198 * 103.15292 * 11 7 6 33 33 H 1.09000 * 109.38659 * 222.95262 * 11 7 6 34 34 H 1.09004 * 109.62904 * 170.14907 * 12 11 7 35 35 H 1.09003 * 109.63412 * 290.74202 * 12 11 7 36 36 H 1.08989 * 109.47265 * 173.02418 * 14 13 12 37 37 H 1.08999 * 109.47185 * 293.02822 * 14 13 12 38 38 H 0.97001 * 119.99860 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.27111 * 292.25706 * 23 13 12 40 40 H 1.09004 * 109.26976 * 172.78358 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2952 2.3760 0.0005 5 6 1.9281 3.6027 0.0000 6 6 3.3134 3.6815 -0.0005 7 6 4.0660 2.5262 0.0025 8 6 3.4341 1.2884 0.0005 9 8 4.1760 0.1487 0.0000 10 6 4.4306 -0.4601 1.2676 11 6 5.5727 2.5633 0.0128 12 6 6.0633 3.9509 -0.4015 13 7 5.3566 4.9566 0.4076 14 6 5.4653 4.6507 1.8403 15 6 6.9160 4.4711 2.2070 16 1 7.6856 4.6558 1.4721 17 6 7.2607 4.0711 3.4806 18 7 6.3239 3.7370 4.3411 19 14 9.0584 4.0037 3.9840 20 1 9.6270 5.3756 3.9740 21 1 9.1688 3.4319 5.3500 22 1 9.8084 3.1501 3.0279 23 6 3.9527 5.0457 -0.0056 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 0.2165 2.3239 0.0017 28 1 1.3402 4.5086 0.0000 29 1 5.1045 -1.3066 1.1353 30 1 4.8900 0.2690 1.9351 31 1 3.4918 -0.8071 1.6992 32 1 5.9335 2.3365 1.0161 33 1 5.9577 1.8212 -0.6865 34 1 7.1364 4.0275 -0.2258 35 1 5.8497 4.1146 -1.4578 36 1 5.0430 5.4713 2.4201 37 1 4.9192 3.7329 2.0583 38 1 6.5664 3.4559 5.2372 39 1 3.8993 5.4642 -1.0106 40 1 3.4155 5.6971 0.6837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336734044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = -61.121887 kcal Electronic energy + Delta-G solvation = -22510.072466 eV Core-core repulsion = 19289.803681 eV Total energy + Delta-G solvation = -3220.268786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88803 -39.99685 -38.96870 -37.12629 -34.70648 -33.09819 -31.56067 -30.27949 -29.19059 -28.22545 -27.46702 -25.48530 -24.88884 -23.05023 -22.90697 -20.29608 -18.96716 -18.46016 -17.93496 -17.82015 -17.07459 -16.73597 -16.34181 -15.93666 -15.84268 -15.63631 -15.19523 -15.01140 -14.60387 -14.34297 -14.00776 -13.72168 -13.41894 -13.16834 -12.94298 -12.91315 -12.76944 -12.63747 -12.52033 -12.39252 -12.06973 -11.87874 -11.73839 -11.48954 -11.12720 -10.97614 -10.59555 -9.59658 -8.98622 -8.96848 -8.17865 -6.25399 0.15751 0.33987 1.41420 1.43934 1.51215 2.27237 2.40622 2.41699 2.96905 3.15993 3.43350 3.74941 3.88741 4.08598 4.15474 4.28140 4.32931 4.35671 4.38011 4.41324 4.41529 4.44149 4.57758 4.65706 4.70010 4.74640 4.86747 4.92946 5.02654 5.19419 5.20279 5.27425 5.39368 5.45093 5.60049 5.68379 5.70126 6.06420 6.16011 6.30507 6.63038 6.68710 6.91121 7.43146 8.93202 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.005889 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.543737 B = 4753.843690 C = 5331.366932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.095 3.905 4 C -0.198 4.198 5 C -0.078 4.078 6 C -0.146 4.146 7 C -0.059 4.059 8 C 0.031 3.969 9 O -0.339 6.339 10 C 0.039 3.961 11 C -0.101 4.101 12 C 0.072 3.928 13 N -0.537 5.537 14 C 0.206 3.794 15 C -0.520 4.520 16 H 0.065 0.935 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.959 3.041 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.095 3.905 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.119 0.881 27 H 0.165 0.835 28 H 0.159 0.841 29 H 0.115 0.885 30 H 0.023 0.977 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.082 0.918 36 H -0.005 1.005 37 H -0.020 1.020 38 H 0.262 0.738 39 H 0.104 0.896 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 -5.307 -9.562 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.049 3.951 4 C -0.216 4.216 5 C -0.096 4.096 6 C -0.148 4.148 7 C -0.060 4.060 8 C -0.013 4.013 9 O -0.255 6.255 10 C -0.055 4.055 11 C -0.139 4.139 12 C -0.056 4.056 13 N -0.258 5.258 14 C 0.080 3.920 15 C -0.559 4.559 16 H 0.083 0.917 17 C -0.191 4.191 18 N -0.572 5.572 19 Si 0.784 3.216 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.034 4.034 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.138 0.862 27 H 0.182 0.818 28 H 0.176 0.824 29 H 0.134 0.866 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.013 0.987 37 H -0.002 1.002 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.190 -5.171 -9.611 15.631 hybrid contribution 0.240 -0.852 1.250 1.532 sum -10.950 -6.023 -8.360 15.036 Atomic orbital electron populations 1.23389 0.76353 1.05626 1.02401 1.86106 1.23545 1.26040 1.88712 1.19428 0.91173 0.85987 0.98475 1.21371 1.01269 0.90909 1.08065 1.21253 0.93013 0.98602 0.96718 1.20539 0.94761 0.96277 1.03267 1.19837 0.96563 0.91555 0.98004 1.18132 0.87293 0.86358 1.09541 1.85959 1.71315 1.37760 1.30509 1.23003 1.00908 0.97464 0.84140 1.20812 0.90672 1.00403 1.02003 1.21993 0.99238 0.87696 0.96640 1.62641 1.10992 1.46691 1.05467 1.19390 0.96009 0.92982 0.83615 1.21443 0.92873 1.44634 0.96922 0.91731 1.25798 1.01714 0.94880 0.96717 1.70101 1.34624 1.46242 1.06251 0.85587 0.80054 0.78737 0.77198 1.19442 1.21204 1.19188 1.21191 0.88293 0.91619 1.02285 0.91843 0.91192 0.86245 0.81795 0.82377 0.86628 0.95768 0.93322 0.92247 0.90361 0.90856 0.89986 0.98732 1.00196 0.92965 0.87804 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.39 16 2 O -0.33 -9.60 10.28 -79.53 -0.82 -10.42 16 3 C 0.10 3.12 6.69 22.52 0.15 3.27 16 4 C -0.20 -5.35 9.04 22.30 0.20 -5.15 16 5 C -0.08 -2.21 9.64 22.34 0.22 -2.00 16 6 C -0.15 -5.20 5.24 -19.84 -0.10 -5.31 16 7 C -0.06 -2.33 5.06 -19.76 -0.10 -2.43 16 8 C 0.03 1.18 5.70 22.62 0.13 1.31 16 9 O -0.34 -12.93 9.32 -79.39 -0.74 -13.67 16 10 C 0.04 1.31 11.13 113.37 1.26 2.57 16 11 C -0.10 -4.18 4.73 29.82 0.14 -4.03 16 12 C 0.07 2.87 5.52 86.22 0.48 3.35 16 13 N -0.54 -23.11 5.11 -905.71 -4.63 -27.74 16 14 C 0.21 10.92 4.15 85.56 0.35 11.27 16 15 C -0.52 -29.04 7.74 25.60 0.20 -28.84 16 16 H 0.06 3.51 6.44 -2.91 -0.02 3.49 16 17 C 0.01 0.40 5.45 84.65 0.46 0.86 16 18 N -0.93 -56.05 13.28 21.45 0.28 -55.77 16 19 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.09 3.31 5.54 85.60 0.47 3.79 16 24 H 0.06 0.97 7.67 -2.39 -0.02 0.95 16 25 H 0.07 0.98 7.67 -2.38 -0.02 0.96 16 26 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.16 3.10 6.32 -2.91 -0.02 3.08 16 28 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 2.96 6.44 -2.39 -0.02 2.95 16 33 H 0.08 3.02 7.84 -2.39 -0.02 3.00 16 34 H 0.07 3.06 6.50 -2.38 -0.02 3.04 16 35 H 0.08 2.77 8.05 -2.39 -0.02 2.75 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H -0.02 -1.14 5.77 -2.39 -0.01 -1.16 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.08 2.76 8.05 -2.39 -0.02 2.74 16 Total: -1.00 -69.24 320.27 2.13 -67.11 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.03 Total: 14.17 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.97 Total: -19.95 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -4.35 Total: -83.51 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.56 Total: -24.09 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.24 2.13 -67.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336734044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.986 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds