Wall clock time and date at job start Mon Mar 30 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 114.00018 * 2 1 4 4 C 1.52995 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47251 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47251 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47135 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99843 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00206 * 179.97438 * 7 6 5 10 10 C 1.39124 * 120.00238 * 184.92058 * 9 7 6 11 11 C 1.38648 * 120.28450 * 331.07282 * 10 9 7 12 12 C 1.38222 * 120.03444 * 180.25500 * 11 10 9 13 13 C 1.38868 * 120.61523 * 359.74296 * 12 11 10 14 14 C 1.36463 * 120.57707 * 359.97438 * 13 12 11 15 15 C 1.40735 * 119.94377 * 0.02562 * 14 13 12 16 16 C 1.41070 * 120.30234 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00144 * 205.07764 * 16 15 14 18 18 C 1.39957 * 119.99928 * 25.07528 * 16 15 14 19 19 N 1.30859 * 120.00087 * 17.59364 * 18 16 15 20 20 Si 1.86806 * 120.00080 * 197.59044 * 18 16 15 21 21 H 1.48498 * 109.47009 * 265.01870 * 20 18 16 22 22 H 1.48498 * 109.46850 * 25.02199 * 20 18 16 23 23 H 1.48501 * 109.46939 * 145.01872 * 20 18 16 24 24 H 1.09003 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47304 * 299.99684 * 1 2 3 26 26 H 1.09002 * 109.47160 * 60.00101 * 1 2 3 27 27 H 1.09001 * 109.46677 * 59.99971 * 3 2 1 28 28 H 1.09000 * 109.47008 * 300.00197 * 3 2 1 29 29 H 1.09001 * 109.47127 * 60.00507 * 4 3 2 30 30 H 1.09000 * 109.47523 * 300.00141 * 4 3 2 31 31 H 1.09001 * 109.46758 * 60.00138 * 5 4 3 32 32 H 1.09000 * 109.46856 * 300.00407 * 5 4 3 33 33 H 1.09001 * 109.47127 * 60.00364 * 6 5 4 34 34 H 1.09000 * 109.47523 * 299.99999 * 6 5 4 35 35 H 0.97006 * 119.99904 * 4.91693 * 9 7 6 36 36 H 1.08001 * 119.98390 * 359.97074 * 11 10 9 37 37 H 1.08001 * 119.69310 * 179.76062 * 12 11 10 38 38 H 1.07999 * 119.70812 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.02847 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99956 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6829 2.4617 0.0026 7 6 6.2958 3.8384 0.0026 8 8 5.5829 4.8196 0.0021 9 7 7.6362 3.9793 0.0041 10 6 8.2024 5.2459 0.1075 11 6 7.5253 6.3559 -0.3740 12 6 8.0950 7.6112 -0.2734 13 6 9.3431 7.7766 0.3126 14 6 10.0289 6.7022 0.8000 15 6 9.4713 5.4132 0.7100 16 6 10.1740 4.2972 1.2110 17 1 9.9802 3.3129 0.8108 18 6 11.1223 4.4655 2.2264 19 7 11.1230 5.5581 2.9465 20 14 12.3870 3.1302 2.5540 21 1 11.9005 2.2437 3.6415 22 1 12.5944 2.3314 1.3195 23 1 13.6714 3.7543 2.9614 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8574 0.6437 -0.8892 30 1 3.8567 0.6440 0.8908 31 1 3.8357 3.1231 0.8913 32 1 3.8364 3.1236 -0.8887 33 1 6.0053 1.9209 -0.8872 34 1 6.0038 1.9207 0.8928 35 1 8.2061 3.1976 -0.0667 36 1 6.5543 6.2390 -0.8321 37 1 7.5644 8.4716 -0.6539 38 1 9.7743 8.7642 0.3839 39 1 10.9988 6.8410 1.2544 40 1 11.7805 5.6749 3.6500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339166039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:01 Heat of formation + Delta-G solvation = -79.817211 kcal Electronic energy + Delta-G solvation = -20609.614379 eV Core-core repulsion = 17388.534903 eV Total energy + Delta-G solvation = -3221.079476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59089 -38.18162 -37.23872 -34.71856 -33.71017 -33.66460 -30.21926 -29.61438 -28.23071 -26.65096 -25.26910 -23.95015 -21.78501 -21.13731 -20.45613 -19.28276 -17.37822 -16.71530 -16.52354 -16.47664 -15.93145 -15.38283 -15.23835 -14.99264 -14.26904 -14.04666 -13.59160 -13.11316 -12.80635 -12.60340 -12.57811 -12.28615 -11.77431 -11.67993 -11.57319 -11.44515 -11.30378 -11.12348 -11.03235 -10.99663 -10.63814 -10.54114 -10.05309 -9.87331 -9.71123 -9.26008 -9.22650 -8.69425 -7.40179 -6.95026 -6.75922 -4.36299 2.64458 2.86899 3.02561 3.05670 3.21115 3.44300 3.52954 3.86421 4.05122 4.61517 4.82851 4.83316 5.02621 5.08289 5.16258 5.27395 5.30338 5.35267 5.39173 5.63210 5.71514 5.72528 5.84033 5.86668 6.23184 6.35271 6.36484 6.55281 6.63168 6.91337 6.94473 7.08683 7.18135 7.31497 7.63246 7.73544 7.99173 8.09892 8.12971 8.43776 8.56304 8.80911 8.85031 9.07189 10.13024 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003591 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.531054 B = 7795.427553 C = 9044.296736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.099 4.099 6 C -0.137 4.137 7 C 0.496 3.504 8 O -0.543 6.543 9 N -0.638 5.638 10 C 0.013 3.987 11 C -0.094 4.094 12 C -0.230 4.230 13 C -0.112 4.112 14 C -0.156 4.156 15 C 0.102 3.898 16 C -0.466 4.466 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.790 5.790 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.260 1.260 23 H -0.275 1.275 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.402 0.598 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.446 -9.170 -3.805 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.016 4.016 4 C -0.156 4.156 5 C -0.137 4.137 6 C -0.178 4.178 7 C 0.283 3.717 8 O -0.422 6.422 9 N -0.279 5.279 10 C -0.081 4.081 11 C -0.114 4.114 12 C -0.250 4.250 13 C -0.131 4.131 14 C -0.176 4.176 15 C 0.099 3.901 16 C -0.496 4.496 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.415 5.415 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.184 1.184 23 H -0.200 1.200 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.236 0.764 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.729 -8.567 -3.582 14.189 hybrid contribution 0.733 -0.657 0.381 1.056 sum -9.996 -9.225 -3.201 13.973 Atomic orbital electron populations 1.22722 0.81216 1.02573 0.99983 1.87861 1.19588 1.28508 1.95454 1.22590 0.94390 0.84271 1.00399 1.21546 0.92778 0.97935 1.03347 1.21205 0.93224 0.95491 1.03829 1.21611 0.96535 0.95375 1.04238 1.20576 0.82458 0.91275 0.77384 1.90602 1.61131 1.40267 1.50192 1.42909 1.06046 1.08811 1.70119 1.17740 0.95442 0.83684 1.11240 1.20878 0.99327 0.91800 0.99388 1.20329 0.98072 0.95799 1.10770 1.20469 0.95428 0.97357 0.99857 1.20867 1.00652 0.91872 1.04216 1.17396 0.89369 0.93832 0.89544 1.19232 1.18624 0.94621 1.17102 0.90812 1.25846 0.97184 0.96473 0.94502 1.69842 1.30909 1.26145 1.14629 0.86337 0.80017 0.81107 0.79499 1.19630 1.18424 1.20006 0.89775 0.94104 0.94140 0.93156 0.93200 0.91100 0.91025 0.90962 0.91068 0.89270 0.88956 0.76359 0.86332 0.89305 0.89481 0.86249 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.40 -4.40 10.70 -35.23 -0.38 -4.78 16 3 C 0.06 0.61 5.94 37.15 0.22 0.83 16 4 C -0.12 -1.23 5.58 -26.73 -0.15 -1.38 16 5 C -0.10 -1.22 4.50 -26.73 -0.12 -1.34 16 6 C -0.14 -1.80 5.70 -27.89 -0.16 -1.95 16 7 C 0.50 9.29 7.70 -10.99 -0.08 9.21 16 8 O -0.54 -12.01 13.05 5.55 0.07 -11.93 16 9 N -0.64 -12.93 5.10 -9.47 -0.05 -12.98 16 10 C 0.01 0.31 6.44 -83.17 -0.54 -0.23 16 11 C -0.09 -2.30 8.75 -39.44 -0.35 -2.65 16 12 C -0.23 -5.47 10.04 -39.35 -0.39 -5.86 16 13 C -0.11 -2.71 9.97 -39.99 -0.40 -3.10 16 14 C -0.16 -4.05 8.64 -39.28 -0.34 -4.39 16 15 C 0.10 2.66 5.58 -106.65 -0.60 2.06 16 16 C -0.47 -11.60 8.65 -37.87 -0.33 -11.93 16 17 H 0.07 1.68 6.69 -52.49 -0.35 1.33 16 18 C 0.08 1.89 5.14 -17.32 -0.09 1.80 16 19 N -0.79 -20.00 10.98 55.55 0.61 -19.39 16 20 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 23 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 7.12 7.34 -40.82 -0.30 6.82 16 36 H 0.12 2.88 5.74 -52.49 -0.30 2.58 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.12 3.15 6.19 -52.48 -0.32 2.83 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -30.04 334.23 -7.85 -37.89 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.90 Total: 10.92 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -2.21 Total: -17.56 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.56 Total: -32.37 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.30 Total: -16.71 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.04 -7.85 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339166039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.931 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds