Wall clock time and date at job start Mon Mar 30 2020 02:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 114.00018 * 2 1 4 4 C 1.52995 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47251 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47251 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47135 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99843 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00206 * 179.97438 * 7 6 5 10 10 C 1.39124 * 120.00238 * 184.92058 * 9 7 6 11 11 C 1.38648 * 120.28450 * 331.07282 * 10 9 7 12 12 C 1.38222 * 120.03444 * 180.25500 * 11 10 9 13 13 C 1.38868 * 120.61523 * 359.74296 * 12 11 10 14 14 C 1.36463 * 120.57707 * 359.97438 * 13 12 11 15 15 C 1.40735 * 119.94377 * 0.02562 * 14 13 12 16 16 C 1.41070 * 120.30234 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00144 * 205.07764 * 16 15 14 18 18 C 1.39957 * 119.99928 * 25.07528 * 16 15 14 19 19 N 1.30859 * 120.00087 * 17.59364 * 18 16 15 20 20 Si 1.86806 * 120.00080 * 197.59044 * 18 16 15 21 21 H 1.48498 * 109.47009 * 265.01870 * 20 18 16 22 22 H 1.48498 * 109.46850 * 25.02199 * 20 18 16 23 23 H 1.48501 * 109.46939 * 145.01872 * 20 18 16 24 24 H 1.09003 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47304 * 299.99684 * 1 2 3 26 26 H 1.09002 * 109.47160 * 60.00101 * 1 2 3 27 27 H 1.09001 * 109.46677 * 59.99971 * 3 2 1 28 28 H 1.09000 * 109.47008 * 300.00197 * 3 2 1 29 29 H 1.09001 * 109.47127 * 60.00507 * 4 3 2 30 30 H 1.09000 * 109.47523 * 300.00141 * 4 3 2 31 31 H 1.09001 * 109.46758 * 60.00138 * 5 4 3 32 32 H 1.09000 * 109.46856 * 300.00407 * 5 4 3 33 33 H 1.09001 * 109.47127 * 60.00364 * 6 5 4 34 34 H 1.09000 * 109.47523 * 299.99999 * 6 5 4 35 35 H 0.97006 * 119.99904 * 4.91693 * 9 7 6 36 36 H 1.08001 * 119.98390 * 359.97074 * 11 10 9 37 37 H 1.08001 * 119.69310 * 179.76062 * 12 11 10 38 38 H 1.07999 * 119.70812 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.02847 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99956 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6829 2.4617 0.0026 7 6 6.2958 3.8384 0.0026 8 8 5.5829 4.8196 0.0021 9 7 7.6362 3.9793 0.0041 10 6 8.2024 5.2459 0.1075 11 6 7.5253 6.3559 -0.3740 12 6 8.0950 7.6112 -0.2734 13 6 9.3431 7.7766 0.3126 14 6 10.0289 6.7022 0.8000 15 6 9.4713 5.4132 0.7100 16 6 10.1740 4.2972 1.2110 17 1 9.9802 3.3129 0.8108 18 6 11.1223 4.4655 2.2264 19 7 11.1230 5.5581 2.9465 20 14 12.3870 3.1302 2.5540 21 1 11.9005 2.2437 3.6415 22 1 12.5944 2.3314 1.3195 23 1 13.6714 3.7543 2.9614 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8574 0.6437 -0.8892 30 1 3.8567 0.6440 0.8908 31 1 3.8357 3.1231 0.8913 32 1 3.8364 3.1236 -0.8887 33 1 6.0053 1.9209 -0.8872 34 1 6.0038 1.9207 0.8928 35 1 8.2061 3.1976 -0.0667 36 1 6.5543 6.2390 -0.8321 37 1 7.5644 8.4716 -0.6539 38 1 9.7743 8.7642 0.3839 39 1 10.9988 6.8410 1.2544 40 1 11.7805 5.6749 3.6500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339166039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:00 Heat of formation + Delta-G solvation = -97.343766 kcal Electronic energy + Delta-G solvation = -20610.374387 eV Core-core repulsion = 17388.534903 eV Total energy + Delta-G solvation = -3221.839484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19358 -39.13587 -38.81457 -35.79409 -35.48760 -35.36331 -31.55152 -31.33906 -29.79235 -27.50141 -27.00650 -25.04492 -23.36384 -22.55626 -21.85763 -20.88725 -19.21355 -18.34783 -17.67242 -17.31689 -17.16721 -16.85160 -16.48556 -16.07706 -15.86627 -15.29148 -15.10377 -14.68974 -14.41185 -14.17627 -13.73711 -13.48572 -13.41119 -13.14555 -12.80502 -12.74634 -12.59052 -12.38925 -12.28921 -12.17445 -11.87028 -11.85999 -11.57627 -11.52168 -11.03509 -10.98703 -10.60822 -10.37895 -9.33098 -8.78473 -8.57914 -6.26047 0.86783 1.06869 1.42616 1.52765 1.58469 1.89325 2.21830 2.45307 2.77799 2.90293 3.71440 3.84739 3.99816 4.03042 4.33480 4.37292 4.42765 4.53693 4.53997 4.56025 4.64421 4.75118 4.76895 4.83964 4.85398 4.87669 5.00669 5.08934 5.25568 5.30984 5.33252 5.41494 5.48529 5.78244 5.86708 6.16390 6.20304 6.23536 6.25815 6.65878 6.75972 6.96972 7.03821 7.47923 8.34793 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003591 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.531054 B = 7795.427553 C = 9044.296736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.057 3.943 4 C -0.109 4.109 5 C -0.093 4.093 6 C -0.126 4.126 7 C 0.491 3.509 8 O -0.580 6.580 9 N -0.639 5.639 10 C 0.008 3.992 11 C -0.110 4.110 12 C -0.236 4.236 13 C -0.118 4.118 14 C -0.181 4.181 15 C 0.073 3.927 16 C -0.487 4.487 17 H 0.090 0.910 18 C 0.035 3.965 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.265 1.265 22 H -0.251 1.251 23 H -0.273 1.273 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.413 0.587 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.611 -11.286 -4.002 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.019 4.019 4 C -0.147 4.147 5 C -0.132 4.132 6 C -0.165 4.165 7 C 0.281 3.719 8 O -0.461 6.461 9 N -0.281 5.281 10 C -0.087 4.087 11 C -0.130 4.130 12 C -0.256 4.256 13 C -0.137 4.137 14 C -0.202 4.202 15 C 0.070 3.930 16 C -0.516 4.516 17 H 0.107 0.893 18 C -0.180 4.180 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.189 1.189 22 H -0.175 1.175 23 H -0.198 1.198 24 H 0.116 0.884 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.913 -10.704 -3.790 15.749 hybrid contribution 0.687 0.047 0.436 0.815 sum -10.226 -10.657 -3.355 15.146 Atomic orbital electron populations 1.22919 0.79708 1.03803 1.00718 1.87817 1.21343 1.28822 1.95599 1.22602 0.94350 0.84242 1.00705 1.21431 0.92829 0.96457 1.03966 1.21126 0.92777 0.96546 1.02707 1.21656 0.96470 0.91748 1.06643 1.21625 0.81564 0.93190 0.75521 1.90578 1.61725 1.42250 1.51518 1.42971 1.06972 1.07803 1.70355 1.17915 0.95120 0.85466 1.10193 1.21059 0.99506 0.92452 1.00027 1.20631 0.98078 0.96494 1.10397 1.20703 0.95553 0.98027 0.99406 1.20921 1.00708 0.92906 1.05626 1.17764 0.90355 0.94432 0.90482 1.19583 1.19409 0.95036 1.17578 0.89254 1.26781 0.98655 0.98799 0.93799 1.69916 1.31806 1.28215 1.15259 0.85170 0.76898 0.77924 0.79607 1.18937 1.17467 1.19805 0.88388 0.93479 0.93305 0.93122 0.92733 0.90147 0.90662 0.92590 0.91848 0.86093 0.87001 0.75008 0.86398 0.87052 0.87256 0.87541 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.55 10.70 -148.98 -1.59 -10.15 16 3 C 0.06 1.08 5.94 71.98 0.43 1.51 16 4 C -0.11 -2.02 5.58 30.59 0.17 -1.85 16 5 C -0.09 -2.14 4.50 30.59 0.14 -2.00 16 6 C -0.13 -2.98 5.70 29.85 0.17 -2.81 16 7 C 0.49 17.99 7.70 87.66 0.68 18.66 16 8 O -0.58 -25.70 13.05 -3.05 -0.04 -25.74 16 9 N -0.64 -25.52 5.10 -302.27 -1.54 -27.06 16 10 C 0.01 0.38 6.44 38.88 0.25 0.63 16 11 C -0.11 -5.46 8.75 22.36 0.20 -5.26 16 12 C -0.24 -11.27 10.04 22.42 0.22 -11.05 16 13 C -0.12 -5.75 9.97 22.01 0.22 -5.53 16 14 C -0.18 -9.64 8.64 22.47 0.19 -9.45 16 15 C 0.07 3.87 5.58 -21.18 -0.12 3.75 16 16 C -0.49 -24.20 8.65 23.38 0.20 -23.99 16 17 H 0.09 3.99 6.69 -2.91 -0.02 3.97 16 18 C 0.03 1.66 5.14 85.25 0.44 2.10 16 19 N -0.83 -42.29 10.98 21.83 0.24 -42.05 16 20 Si 0.98 35.82 29.60 68.60 2.03 37.85 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 22 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 32 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.41 14.15 7.34 -92.70 -0.68 13.47 16 36 H 0.12 5.80 5.74 -2.91 -0.02 5.79 16 37 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.11 5.82 6.19 -2.91 -0.02 5.81 16 40 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -65.41 334.23 3.89 -61.52 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: 0.36 Total: 39.33 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 4.44 Total: -33.70 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.30 Total: -69.11 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -1.63 Total: -35.89 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -65.41 3.89 -61.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339166039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.821 kcal (2) G-P(sol) polarization free energy of solvation -65.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds