Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47131 * 2 1 4 4 C 1.42899 * 113.99800 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47090 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47365 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47335 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.39131 * 119.99596 * 185.72517 * 9 7 6 11 11 C 1.38643 * 120.29102 * 19.23887 * 10 9 7 12 12 C 1.38218 * 120.03790 * 180.25521 * 11 10 9 13 13 C 1.38869 * 120.61130 * 359.74772 * 12 11 10 14 14 C 1.36452 * 120.58138 * 359.97438 * 13 12 11 15 15 C 1.40734 * 119.94318 * 0.02562 * 14 13 12 16 16 C 1.41075 * 120.30396 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00290 * 206.47144 * 16 15 14 18 18 C 1.39960 * 119.99628 * 26.47377 * 16 15 14 19 19 N 1.30856 * 120.00076 * 201.35880 * 18 16 15 20 20 Si 1.86801 * 120.00227 * 21.35675 * 18 16 15 21 21 H 1.48501 * 109.47328 * 270.00467 * 20 18 16 22 22 H 1.48502 * 109.46755 * 29.99960 * 20 18 16 23 23 H 1.48496 * 109.47355 * 149.99993 * 20 18 16 24 24 H 1.09007 * 109.46952 * 60.00271 * 1 2 3 25 25 H 1.08996 * 109.47544 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47129 * 300.00520 * 1 2 3 27 27 H 1.08997 * 109.47338 * 239.99900 * 2 1 3 28 28 H 1.09002 * 109.46495 * 119.99641 * 2 1 3 29 29 H 1.09004 * 109.46889 * 60.00236 * 4 3 2 30 30 H 1.08997 * 109.47286 * 299.99685 * 4 3 2 31 31 H 1.09008 * 109.46671 * 60.00023 * 5 4 3 32 32 H 1.09004 * 109.47476 * 300.00700 * 5 4 3 33 33 H 1.09000 * 109.47390 * 59.99950 * 6 5 4 34 34 H 1.09004 * 109.47301 * 300.00693 * 6 5 4 35 35 H 0.96996 * 120.00122 * 5.72752 * 9 7 6 36 36 H 1.08002 * 119.97637 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.69243 * 179.76358 * 12 11 10 38 38 H 1.08004 * 119.70407 * 180.02562 * 13 12 11 39 39 H 1.08002 * 120.02954 * 180.02562 * 14 13 12 40 40 H 0.97004 * 119.99239 * 354.93959 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9384 -0.0001 6 6 5.3506 3.0592 -0.0001 7 6 5.7392 4.5152 -0.0002 8 8 4.8808 5.3719 -0.0007 9 7 7.0407 4.8652 -0.0007 10 6 7.4011 6.2037 0.1194 11 6 6.5013 7.1271 0.6292 12 6 6.8629 8.4564 0.7413 13 6 8.1266 8.8807 0.3520 14 6 9.0338 7.9924 -0.1477 15 6 8.6908 6.6332 -0.2723 16 6 9.6227 5.7083 -0.7885 17 1 9.2773 4.8098 -1.2781 18 6 10.9949 5.9552 -0.6660 19 7 11.8406 5.3628 -1.4698 20 14 11.6191 7.1306 0.6449 21 1 11.6733 8.5071 0.0903 22 1 10.7013 7.1030 1.8120 23 1 12.9788 6.7161 1.0745 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.4223 3.4224 0.8895 32 1 3.4230 3.4215 -0.8905 33 1 5.7535 2.5752 -0.8899 34 1 5.7534 2.5759 0.8900 35 1 7.7262 4.1841 -0.0849 36 1 5.5156 6.8082 0.9346 37 1 6.1562 9.1716 1.1356 38 1 8.3938 9.9229 0.4464 39 1 10.0142 8.3321 -0.4474 40 1 11.5247 4.6976 -2.1013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339170600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = -79.630380 kcal Electronic energy + Delta-G solvation = -20676.007504 eV Core-core repulsion = 17454.936130 eV Total energy + Delta-G solvation = -3221.071374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82846 -38.29237 -37.44672 -34.01080 -33.89832 -33.66909 -31.26075 -30.25021 -28.90946 -26.61479 -24.71363 -23.02840 -22.56841 -21.53801 -20.32638 -19.52626 -18.24572 -17.18067 -16.61354 -16.52365 -16.30262 -15.41920 -14.86568 -14.53952 -14.23545 -14.12652 -13.62052 -13.42357 -12.88256 -12.84801 -12.69048 -12.57218 -12.13874 -11.87785 -11.77845 -11.69069 -11.51029 -11.07475 -10.95722 -10.84082 -10.81078 -10.50982 -9.88726 -9.78128 -9.70806 -9.47339 -9.11963 -8.78297 -7.76245 -7.39250 -7.01185 -4.56357 2.40889 2.70472 3.17621 3.23128 3.33560 3.37929 3.52573 3.93342 3.97054 4.51853 4.76195 4.84106 4.90424 4.92763 5.06790 5.13899 5.26399 5.32000 5.41107 5.45306 5.45881 5.62875 5.65649 5.83581 6.09229 6.11341 6.22890 6.26133 6.39128 6.67475 6.81840 7.02406 7.04495 7.33369 7.35459 7.50334 7.67452 7.84109 7.91537 8.21772 8.34909 8.47722 8.68344 8.86048 9.92726 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027300 B = 0.003407 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.377713 B = 8216.468415 C = 9042.355057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.063 3.937 5 C -0.101 4.101 6 C -0.136 4.136 7 C 0.496 3.504 8 O -0.537 6.537 9 N -0.637 5.637 10 C 0.024 3.976 11 C -0.093 4.093 12 C -0.230 4.230 13 C -0.088 4.088 14 C -0.234 4.234 15 C 0.085 3.915 16 C -0.524 4.524 17 H 0.074 0.926 18 C 0.046 3.954 19 N -0.813 5.813 20 Si 1.075 2.925 21 H -0.275 1.275 22 H -0.263 1.263 23 H -0.291 1.291 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 -9.931 3.375 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.014 4.014 5 C -0.139 4.139 6 C -0.176 4.176 7 C 0.283 3.717 8 O -0.416 6.416 9 N -0.278 5.278 10 C -0.071 4.071 11 C -0.113 4.113 12 C -0.250 4.250 13 C -0.107 4.107 14 C -0.254 4.254 15 C 0.081 3.919 16 C -0.553 4.553 17 H 0.092 0.908 18 C -0.174 4.174 19 N -0.435 5.435 20 Si 0.901 3.099 21 H -0.202 1.202 22 H -0.188 1.188 23 H -0.218 1.218 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.242 0.758 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.516 -8.597 3.886 14.128 hybrid contribution -0.711 -1.443 -0.939 1.863 sum -11.227 -10.041 2.946 15.347 Atomic orbital electron populations 1.21747 0.93824 1.02099 1.03243 1.22447 0.95599 0.84017 0.99951 1.87902 1.21346 1.26175 1.95412 1.22526 0.81065 0.97707 1.00054 1.21191 0.93539 0.94213 1.04979 1.21515 0.97256 0.94506 1.04366 1.20493 0.82601 0.90973 0.77607 1.90581 1.49751 1.51471 1.49755 1.43005 1.07076 1.08197 1.69566 1.17763 0.97087 0.82761 1.09445 1.21176 0.99338 0.92739 0.98058 1.20361 0.97080 0.95372 1.12165 1.20391 0.94037 0.97677 0.98597 1.20702 1.00305 0.93020 1.11375 1.17495 0.91302 0.92532 0.90581 1.20354 0.92587 1.07390 1.34987 0.90766 1.27257 0.93335 0.98985 0.97816 1.70575 1.39923 1.19315 1.13715 0.83569 0.75482 0.74926 0.75914 1.20237 1.18783 1.21832 0.91818 0.91216 0.91812 0.93506 0.93506 0.93328 0.93311 0.90286 0.90299 0.89024 0.88910 0.75824 0.85139 0.88642 0.88798 0.87408 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.50 6.66 37.16 0.25 0.74 16 3 O -0.39 -4.69 10.34 -35.23 -0.36 -5.05 16 4 C 0.06 0.67 5.94 37.16 0.22 0.89 16 5 C -0.10 -1.29 4.87 -26.73 -0.13 -1.42 16 6 C -0.14 -1.72 5.70 -27.89 -0.16 -1.88 16 7 C 0.50 9.01 7.67 -10.99 -0.08 8.92 16 8 O -0.54 -11.51 12.87 5.55 0.07 -11.44 16 9 N -0.64 -12.69 5.18 -9.47 -0.05 -12.74 16 10 C 0.02 0.56 6.54 -83.17 -0.54 0.01 16 11 C -0.09 -2.18 8.78 -39.44 -0.35 -2.52 16 12 C -0.23 -5.13 10.04 -39.36 -0.39 -5.53 16 13 C -0.09 -1.97 9.96 -39.99 -0.40 -2.37 16 14 C -0.23 -5.68 7.33 -39.28 -0.29 -5.97 16 15 C 0.09 2.13 5.18 -106.65 -0.55 1.58 16 16 C -0.52 -13.27 8.75 -37.86 -0.33 -13.60 16 17 H 0.07 1.87 7.20 -52.49 -0.38 1.49 16 18 C 0.05 1.16 5.38 -17.32 -0.09 1.07 16 19 N -0.81 -20.96 13.66 55.55 0.76 -20.21 16 20 Si 1.07 23.71 25.01 -169.99 -4.25 19.46 16 21 H -0.28 -5.85 6.37 56.52 0.36 -5.49 16 22 H -0.26 -5.80 7.10 56.52 0.40 -5.40 16 23 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.11 8.10 -51.92 -0.42 0.69 16 32 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.41 7.34 7.33 -40.82 -0.30 7.04 16 36 H 0.13 3.04 5.40 -52.49 -0.28 2.75 16 37 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.11 2.57 4.35 -52.49 -0.23 2.34 16 40 H 0.29 7.13 8.73 -40.82 -0.36 6.77 16 LS Contribution 329.32 15.07 4.96 4.96 Total: -1.00 -29.54 329.32 -7.22 -36.75 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.87 Total: 9.09 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.47 Total: -20.83 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.71 Total: -32.94 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.29 Total: -16.49 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.25 Total: 19.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.54 -7.22 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339170600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.876 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds