Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47131 * 2 1 4 4 C 1.42899 * 113.99800 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47090 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47365 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47335 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.39131 * 119.99596 * 185.72517 * 9 7 6 11 11 C 1.38643 * 120.29102 * 19.23887 * 10 9 7 12 12 C 1.38218 * 120.03790 * 180.25521 * 11 10 9 13 13 C 1.38869 * 120.61130 * 359.74772 * 12 11 10 14 14 C 1.36452 * 120.58138 * 359.97438 * 13 12 11 15 15 C 1.40734 * 119.94318 * 0.02562 * 14 13 12 16 16 C 1.41075 * 120.30396 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00290 * 206.47144 * 16 15 14 18 18 C 1.39960 * 119.99628 * 26.47377 * 16 15 14 19 19 N 1.30856 * 120.00076 * 201.35880 * 18 16 15 20 20 Si 1.86801 * 120.00227 * 21.35675 * 18 16 15 21 21 H 1.48501 * 109.47328 * 270.00467 * 20 18 16 22 22 H 1.48502 * 109.46755 * 29.99960 * 20 18 16 23 23 H 1.48496 * 109.47355 * 149.99993 * 20 18 16 24 24 H 1.09007 * 109.46952 * 60.00271 * 1 2 3 25 25 H 1.08996 * 109.47544 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47129 * 300.00520 * 1 2 3 27 27 H 1.08997 * 109.47338 * 239.99900 * 2 1 3 28 28 H 1.09002 * 109.46495 * 119.99641 * 2 1 3 29 29 H 1.09004 * 109.46889 * 60.00236 * 4 3 2 30 30 H 1.08997 * 109.47286 * 299.99685 * 4 3 2 31 31 H 1.09008 * 109.46671 * 60.00023 * 5 4 3 32 32 H 1.09004 * 109.47476 * 300.00700 * 5 4 3 33 33 H 1.09000 * 109.47390 * 59.99950 * 6 5 4 34 34 H 1.09004 * 109.47301 * 300.00693 * 6 5 4 35 35 H 0.96996 * 120.00122 * 5.72752 * 9 7 6 36 36 H 1.08002 * 119.97637 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.69243 * 179.76358 * 12 11 10 38 38 H 1.08004 * 119.70407 * 180.02562 * 13 12 11 39 39 H 1.08002 * 120.02954 * 180.02562 * 14 13 12 40 40 H 0.97004 * 119.99239 * 354.93959 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9384 -0.0001 6 6 5.3506 3.0592 -0.0001 7 6 5.7392 4.5152 -0.0002 8 8 4.8808 5.3719 -0.0007 9 7 7.0407 4.8652 -0.0007 10 6 7.4011 6.2037 0.1194 11 6 6.5013 7.1271 0.6292 12 6 6.8629 8.4564 0.7413 13 6 8.1266 8.8807 0.3520 14 6 9.0338 7.9924 -0.1477 15 6 8.6908 6.6332 -0.2723 16 6 9.6227 5.7083 -0.7885 17 1 9.2773 4.8098 -1.2781 18 6 10.9949 5.9552 -0.6660 19 7 11.8406 5.3628 -1.4698 20 14 11.6191 7.1306 0.6449 21 1 11.6733 8.5071 0.0903 22 1 10.7013 7.1030 1.8120 23 1 12.9788 6.7161 1.0745 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.4223 3.4224 0.8895 32 1 3.4230 3.4215 -0.8905 33 1 5.7535 2.5752 -0.8899 34 1 5.7534 2.5759 0.8900 35 1 7.7262 4.1841 -0.0849 36 1 5.5156 6.8082 0.9346 37 1 6.1562 9.1716 1.1356 38 1 8.3938 9.9229 0.4464 39 1 10.0142 8.3321 -0.4474 40 1 11.5247 4.6976 -2.1013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339170600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = -97.733299 kcal Electronic energy + Delta-G solvation = -20676.792506 eV Core-core repulsion = 17454.936130 eV Total energy + Delta-G solvation = -3221.856375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40289 -39.35675 -38.92023 -35.68863 -35.56449 -34.87201 -32.10270 -32.01868 -30.51140 -27.79441 -26.49793 -24.08677 -23.67823 -22.93549 -21.90216 -21.05052 -20.11881 -18.56034 -18.01950 -17.47461 -17.40497 -16.67367 -16.48025 -16.04745 -15.61175 -15.32532 -15.03040 -14.93460 -14.42519 -14.34498 -13.93889 -13.80754 -13.53462 -13.33977 -12.80578 -12.71450 -12.58253 -12.49686 -12.42467 -12.24898 -11.89294 -11.78550 -11.68465 -11.45805 -11.20774 -10.92256 -10.53854 -10.44049 -9.64122 -9.29145 -8.79329 -6.48243 0.67876 0.84660 1.41045 1.54896 1.74569 1.83044 2.19341 2.24499 2.65172 2.83404 3.52442 3.69137 3.96604 4.08179 4.17319 4.26842 4.35439 4.40707 4.47604 4.48133 4.49112 4.53491 4.63155 4.70980 4.86942 4.89854 5.00887 5.01396 5.10501 5.21446 5.26088 5.28909 5.44869 5.57957 5.65552 5.93364 6.02696 6.05492 6.30012 6.38932 6.61760 6.67379 6.88934 7.30784 8.00900 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027300 B = 0.003407 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.377713 B = 8216.468415 C = 9042.355057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.419 6.419 4 C 0.066 3.934 5 C -0.096 4.096 6 C -0.123 4.123 7 C 0.493 3.507 8 O -0.571 6.571 9 N -0.641 5.641 10 C 0.020 3.980 11 C -0.113 4.113 12 C -0.223 4.223 13 C -0.094 4.094 14 C -0.247 4.247 15 C 0.060 3.940 16 C -0.540 4.540 17 H 0.063 0.937 18 C 0.019 3.981 19 N -0.837 5.837 20 Si 1.101 2.899 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.282 1.282 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.414 0.586 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 -10.436 4.195 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.339 6.339 4 C -0.010 4.010 5 C -0.135 4.135 6 C -0.162 4.162 7 C 0.283 3.717 8 O -0.452 6.452 9 N -0.283 5.283 10 C -0.076 4.076 11 C -0.133 4.133 12 C -0.242 4.242 13 C -0.113 4.113 14 C -0.267 4.267 15 C 0.056 3.944 16 C -0.570 4.570 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.460 5.460 20 Si 0.924 3.076 21 H -0.188 1.188 22 H -0.190 1.190 23 H -0.209 1.209 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.251 0.749 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.100 -9.132 4.695 15.121 hybrid contribution -0.734 -1.268 -1.177 1.879 sum -11.834 -10.400 3.518 16.142 Atomic orbital electron populations 1.21785 0.93230 1.03381 1.02504 1.22675 0.96208 0.82756 1.01086 1.87865 1.22064 1.28303 1.95665 1.22500 0.80838 0.95904 1.01756 1.21105 0.93439 0.95875 1.03049 1.21524 0.97219 0.90433 1.07042 1.21500 0.81398 0.93133 0.75668 1.90556 1.50451 1.53216 1.50981 1.43116 1.08168 1.07137 1.69885 1.18023 0.96669 0.84566 1.08294 1.21376 0.99432 0.93573 0.98950 1.20778 0.97572 0.95453 1.10416 1.20737 0.93549 0.99177 0.97804 1.20917 1.00956 0.93119 1.11707 1.17720 0.91998 0.93137 0.91557 1.20337 0.93053 1.07547 1.36056 0.91881 1.28085 0.93523 0.99641 0.98421 1.70633 1.40115 1.20501 1.14786 0.83225 0.75438 0.74575 0.74390 1.18788 1.19011 1.20898 0.92609 0.88933 0.92497 0.92395 0.92240 0.91703 0.91392 0.92078 0.92494 0.86422 0.85831 0.74941 0.85256 0.85891 0.85389 0.87287 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.42 -9.54 10.34 -148.98 -1.54 -11.08 16 4 C 0.07 1.26 5.94 71.98 0.43 1.68 16 5 C -0.10 -2.36 4.87 30.59 0.15 -2.21 16 6 C -0.12 -2.83 5.70 29.84 0.17 -2.66 16 7 C 0.49 17.57 7.67 87.66 0.67 18.24 16 8 O -0.57 -24.53 12.87 -3.04 -0.04 -24.57 16 9 N -0.64 -25.30 5.18 -302.27 -1.57 -26.86 16 10 C 0.02 0.92 6.54 38.88 0.25 1.18 16 11 C -0.11 -5.21 8.78 22.36 0.20 -5.01 16 12 C -0.22 -9.47 10.04 22.42 0.22 -9.25 16 13 C -0.09 -3.99 9.96 22.00 0.22 -3.77 16 14 C -0.25 -11.71 7.33 22.46 0.16 -11.55 16 15 C 0.06 3.00 5.18 -21.18 -0.11 2.89 16 16 C -0.54 -27.69 8.75 23.38 0.20 -27.48 16 17 H 0.06 3.26 7.20 -2.91 -0.02 3.24 16 18 C 0.02 0.94 5.38 85.26 0.46 1.40 16 19 N -0.84 -43.64 13.66 21.83 0.30 -43.34 16 20 Si 1.10 47.19 25.01 68.60 1.72 48.90 16 21 H -0.26 -10.56 6.37 99.48 0.63 -9.93 16 22 H -0.27 -11.35 7.10 99.48 0.71 -10.64 16 23 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 24 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.69 8.10 -2.38 -0.02 1.67 16 32 H 0.06 1.62 8.10 -2.38 -0.02 1.60 16 33 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.41 14.81 7.33 -92.71 -0.68 14.13 16 36 H 0.13 5.98 5.40 -2.91 -0.02 5.97 16 37 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 38 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.11 5.06 4.35 -2.91 -0.01 5.05 16 40 H 0.28 14.35 8.73 -92.71 -0.81 13.54 16 Total: -1.00 -63.98 329.32 3.37 -60.61 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.25 Total: 32.96 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 4.25 Total: -36.62 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -1.27 Total: -70.20 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.58 Total: -35.65 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.72 Total: 48.90 kcal Total: -63.98 3.37 -60.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339170600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.124 kcal (2) G-P(sol) polarization free energy of solvation -63.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds