Wall clock time and date at job start Mon Mar 30 2020 01:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47068 * 2 1 4 4 C 1.46496 * 119.99781 * 280.25144 * 3 2 1 5 5 C 1.52997 * 109.47207 * 269.99898 * 4 3 2 6 6 H 1.09002 * 109.47244 * 59.99423 * 5 4 3 7 7 C 1.52999 * 109.47325 * 180.02562 * 5 4 3 8 8 O 1.42904 * 109.47203 * 300.00136 * 5 4 3 9 9 C 1.34780 * 119.99894 * 100.25043 * 3 2 1 10 10 O 1.21586 * 119.99513 * 186.62597 * 9 3 2 11 11 C 1.47640 * 119.99953 * 6.62404 * 9 3 2 12 12 C 1.40013 * 119.89914 * 329.12041 * 11 9 3 13 13 C 1.36321 * 120.10659 * 179.71308 * 12 11 9 14 14 C 1.40889 * 119.88722 * 0.56642 * 13 12 11 15 15 C 1.41114 * 120.09827 * 179.69572 * 14 13 12 16 16 H 1.07999 * 119.99480 * 209.57003 * 15 14 13 17 17 C 1.40228 * 120.00239 * 29.56719 * 15 14 13 18 18 N 1.30640 * 119.99935 * 10.76464 * 17 15 14 19 19 Si 1.86802 * 119.99953 * 190.76321 * 17 15 14 20 20 H 1.48498 * 109.47010 * 60.00202 * 19 17 15 21 21 H 1.48499 * 109.46742 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46857 * 300.00266 * 19 17 15 23 23 C 1.40885 * 119.79965 * 359.71076 * 14 13 12 24 24 C 1.36326 * 119.88674 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.47103 * 60.00466 * 1 2 3 26 26 H 1.09009 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47384 * 299.99980 * 1 2 3 28 28 H 1.08992 * 109.47407 * 239.99536 * 2 1 3 29 29 H 1.09005 * 109.46868 * 119.99544 * 2 1 3 30 30 H 1.09000 * 109.47070 * 29.99927 * 4 3 2 31 31 H 1.09003 * 109.46842 * 150.00145 * 4 3 2 32 32 H 1.08994 * 109.47171 * 59.99857 * 7 5 4 33 33 H 1.08997 * 109.47009 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.46792 * 299.99932 * 7 5 4 35 35 H 0.96701 * 113.99999 * 300.00423 * 8 5 4 36 36 H 1.08004 * 119.94210 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05412 * 180.25339 * 13 12 11 38 38 H 0.96995 * 120.00292 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.05542 * 179.97438 * 23 14 13 40 40 H 1.07999 * 119.93747 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0496 2.1471 -1.2485 5 6 3.3987 1.9406 -1.9398 6 1 3.5362 0.8818 -2.1594 7 6 3.4316 2.7409 -3.2434 8 8 4.4483 2.3887 -1.0797 9 6 2.4388 1.9474 1.1486 10 8 2.7299 3.1276 1.1736 11 6 2.5458 1.1343 2.3763 12 6 1.6759 0.0558 2.5772 13 6 1.7748 -0.7013 3.7065 14 6 2.7465 -0.3895 4.6779 15 6 2.8486 -1.1663 5.8515 16 1 3.2014 -0.7164 6.7678 17 6 2.4919 -2.5223 5.8282 18 7 2.2682 -3.1193 4.6879 19 14 2.3367 -3.4749 7.4275 20 1 1.2966 -2.8451 8.2799 21 1 1.9522 -4.8785 7.1322 22 1 3.6386 -3.4586 8.1417 23 6 3.6158 0.7003 4.4740 24 6 3.5128 1.4483 3.3390 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.2490 1.8052 -1.9045 31 1 1.9122 3.2058 -1.0287 32 1 3.2944 3.7995 -3.0233 33 1 4.3926 2.5933 -3.7361 34 1 2.6311 2.3994 -3.8996 35 1 4.3896 3.3242 -0.8420 36 1 0.9287 -0.1798 1.8338 37 1 1.1061 -1.5356 3.8587 38 1 2.0218 -4.0573 4.6717 39 1 4.3619 0.9432 5.2161 40 1 4.1784 2.2842 3.1821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341311381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:38 Heat of formation + Delta-G solvation = -51.800501 kcal Electronic energy + Delta-G solvation = -21870.475622 eV Core-core repulsion = 18650.611042 eV Total energy + Delta-G solvation = -3219.864580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.77357 -37.60763 -36.67887 -35.43833 -33.77200 -31.77903 -30.23078 -29.95095 -29.28109 -26.83595 -25.18276 -23.09397 -22.05206 -21.08055 -20.98732 -18.80993 -17.50854 -16.57427 -16.43582 -15.87636 -15.38071 -15.10914 -14.79948 -14.49156 -13.89049 -13.50721 -13.28073 -13.02354 -12.69370 -12.57905 -12.25677 -12.10126 -11.92685 -11.76080 -11.69642 -11.47291 -11.29627 -11.19033 -10.93393 -10.85771 -10.82717 -10.39617 -10.10742 -9.96630 -9.41315 -9.27727 -8.85258 -8.13726 -7.59814 -7.42523 -6.90612 -4.55351 2.33112 2.98008 2.98599 3.01704 3.03021 3.49922 3.79579 3.86733 4.55505 4.58211 4.85884 5.09791 5.12529 5.25121 5.28435 5.47129 5.53680 5.62863 5.66197 5.75192 5.86393 5.95313 5.97455 6.11565 6.21377 6.23355 6.33425 6.44965 6.81893 6.90337 6.99198 7.10737 7.18461 7.50236 7.65368 7.83633 7.89204 7.90961 8.11151 8.15585 8.46408 8.70548 8.80654 9.05624 10.01454 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030112 B = 0.004365 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.626644 B = 6412.976756 C = 6848.774404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 N -0.611 5.611 4 C 0.085 3.915 5 C 0.086 3.914 6 H 0.094 0.906 7 C -0.182 4.182 8 O -0.553 6.553 9 C 0.584 3.416 10 O -0.572 6.572 11 C -0.270 4.270 12 C -0.100 4.100 13 C -0.170 4.170 14 C 0.127 3.873 15 C -0.451 4.451 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.786 5.786 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.232 4.232 24 C -0.028 4.028 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.376 0.624 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.284 0.716 39 H 0.097 0.903 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 2.269 -10.485 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.050 4.050 3 N -0.344 5.344 4 C -0.039 4.039 5 C 0.025 3.975 6 H 0.111 0.889 7 C -0.240 4.240 8 O -0.358 6.358 9 C 0.380 3.620 10 O -0.453 6.453 11 C -0.274 4.274 12 C -0.118 4.118 13 C -0.189 4.189 14 C 0.124 3.876 15 C -0.479 4.479 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.410 5.410 19 Si 0.739 3.261 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.252 4.252 24 C -0.047 4.047 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.224 0.776 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.721 2.019 -10.630 11.157 hybrid contribution -0.312 -0.092 0.490 0.588 sum -3.034 1.927 -10.140 10.758 Atomic orbital electron populations 1.22252 0.96575 1.02226 1.02113 1.22453 0.93803 0.83506 1.05248 1.47631 1.65747 1.13779 1.07212 1.22045 0.97156 0.98189 0.86494 1.22298 0.87664 0.98950 0.88586 0.88851 1.22452 1.02535 1.00839 0.98166 1.86584 1.49047 1.31510 1.68701 1.18587 0.74056 0.86506 0.82898 1.90578 1.52091 1.16599 1.86022 1.18912 1.07628 1.03509 0.97395 1.21413 0.98565 0.94129 0.97691 1.21053 1.00782 1.01654 0.95452 1.17798 0.87896 0.89704 0.92179 1.19748 1.37291 0.93908 0.97003 0.90050 1.26014 0.92216 0.98380 0.97926 1.69692 1.32156 1.12384 1.26796 0.86254 0.80034 0.78207 0.81649 1.18670 1.20155 1.18817 1.20762 1.03225 1.02312 0.98897 1.20295 0.95424 0.96341 0.92667 0.92906 0.91436 0.91671 0.92122 0.85455 0.90681 0.89948 0.92248 0.91811 0.91780 0.77582 0.85892 0.86086 0.90455 0.88442 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.16 37.16 0.34 -1.91 16 2 C 0.07 1.10 5.58 -4.04 -0.02 1.08 16 3 N -0.61 -10.44 2.44 -174.88 -0.43 -10.87 16 4 C 0.09 1.17 5.17 -4.05 -0.02 1.15 16 5 C 0.09 1.11 3.86 -26.73 -0.10 1.01 16 6 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 7 C -0.18 -1.75 9.53 37.16 0.35 -1.40 16 8 O -0.55 -9.00 12.30 -35.62 -0.44 -9.44 16 9 C 0.58 12.45 6.85 -12.42 -0.09 12.37 16 10 O -0.57 -13.17 15.53 4.90 0.08 -13.10 16 11 C -0.27 -6.24 5.59 -104.73 -0.59 -6.82 16 12 C -0.10 -2.21 7.39 -39.61 -0.29 -2.50 16 13 C -0.17 -4.17 8.59 -39.27 -0.34 -4.50 16 14 C 0.13 3.27 5.54 -106.80 -0.59 2.68 16 15 C -0.45 -11.40 9.05 -37.74 -0.34 -11.74 16 16 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 17 C 0.07 1.75 5.25 -17.31 -0.09 1.66 16 18 N -0.79 -18.97 10.88 55.56 0.60 -18.37 16 19 Si 0.91 17.65 29.58 -169.99 -5.03 12.63 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 23 C -0.23 -5.71 9.73 -39.27 -0.38 -6.10 16 24 C -0.03 -0.67 9.52 -39.61 -0.38 -1.05 16 25 H 0.05 0.60 7.77 -51.93 -0.40 0.20 16 26 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 27 H 0.06 0.95 7.11 -51.93 -0.37 0.58 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.13 2.29 3.91 -52.69 -0.21 2.09 16 30 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 31 H 0.08 1.21 7.34 -51.93 -0.38 0.83 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.38 5.57 8.68 45.56 0.40 5.97 16 36 H 0.12 2.34 2.74 -52.48 -0.14 2.19 16 37 H 0.12 3.00 6.27 -52.49 -0.33 2.67 16 38 H 0.28 6.22 8.29 -40.82 -0.34 5.89 16 39 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 40 H 0.10 2.23 7.92 -52.49 -0.42 1.82 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -28.86 325.37 -7.60 -36.46 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -4.76 Total: 13.86 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.54 Total: -16.08 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: 0.18 Total: -29.24 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.36 Total: -22.54 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.86 -7.60 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341311381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.337 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds