Wall clock time and date at job start Mon Mar 30 2020 01:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47068 * 2 1 4 4 C 1.46496 * 119.99781 * 280.25144 * 3 2 1 5 5 C 1.52997 * 109.47207 * 269.99898 * 4 3 2 6 6 H 1.09002 * 109.47244 * 59.99423 * 5 4 3 7 7 C 1.52999 * 109.47325 * 180.02562 * 5 4 3 8 8 O 1.42904 * 109.47203 * 300.00136 * 5 4 3 9 9 C 1.34780 * 119.99894 * 100.25043 * 3 2 1 10 10 O 1.21586 * 119.99513 * 186.62597 * 9 3 2 11 11 C 1.47640 * 119.99953 * 6.62404 * 9 3 2 12 12 C 1.40013 * 119.89914 * 329.12041 * 11 9 3 13 13 C 1.36321 * 120.10659 * 179.71308 * 12 11 9 14 14 C 1.40889 * 119.88722 * 0.56642 * 13 12 11 15 15 C 1.41114 * 120.09827 * 179.69572 * 14 13 12 16 16 H 1.07999 * 119.99480 * 209.57003 * 15 14 13 17 17 C 1.40228 * 120.00239 * 29.56719 * 15 14 13 18 18 N 1.30640 * 119.99935 * 10.76464 * 17 15 14 19 19 Si 1.86802 * 119.99953 * 190.76321 * 17 15 14 20 20 H 1.48498 * 109.47010 * 60.00202 * 19 17 15 21 21 H 1.48499 * 109.46742 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46857 * 300.00266 * 19 17 15 23 23 C 1.40885 * 119.79965 * 359.71076 * 14 13 12 24 24 C 1.36326 * 119.88674 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.47103 * 60.00466 * 1 2 3 26 26 H 1.09009 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47384 * 299.99980 * 1 2 3 28 28 H 1.08992 * 109.47407 * 239.99536 * 2 1 3 29 29 H 1.09005 * 109.46868 * 119.99544 * 2 1 3 30 30 H 1.09000 * 109.47070 * 29.99927 * 4 3 2 31 31 H 1.09003 * 109.46842 * 150.00145 * 4 3 2 32 32 H 1.08994 * 109.47171 * 59.99857 * 7 5 4 33 33 H 1.08997 * 109.47009 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.46792 * 299.99932 * 7 5 4 35 35 H 0.96701 * 113.99999 * 300.00423 * 8 5 4 36 36 H 1.08004 * 119.94210 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05412 * 180.25339 * 13 12 11 38 38 H 0.96995 * 120.00292 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.05542 * 179.97438 * 23 14 13 40 40 H 1.07999 * 119.93747 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0496 2.1471 -1.2485 5 6 3.3987 1.9406 -1.9398 6 1 3.5362 0.8818 -2.1594 7 6 3.4316 2.7409 -3.2434 8 8 4.4483 2.3887 -1.0797 9 6 2.4388 1.9474 1.1486 10 8 2.7299 3.1276 1.1736 11 6 2.5458 1.1343 2.3763 12 6 1.6759 0.0558 2.5772 13 6 1.7748 -0.7013 3.7065 14 6 2.7465 -0.3895 4.6779 15 6 2.8486 -1.1663 5.8515 16 1 3.2014 -0.7164 6.7678 17 6 2.4919 -2.5223 5.8282 18 7 2.2682 -3.1193 4.6879 19 14 2.3367 -3.4749 7.4275 20 1 1.2966 -2.8451 8.2799 21 1 1.9522 -4.8785 7.1322 22 1 3.6386 -3.4586 8.1417 23 6 3.6158 0.7003 4.4740 24 6 3.5128 1.4483 3.3390 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.2490 1.8052 -1.9045 31 1 1.9122 3.2058 -1.0287 32 1 3.2944 3.7995 -3.0233 33 1 4.3926 2.5933 -3.7361 34 1 2.6311 2.3994 -3.8996 35 1 4.3896 3.3242 -0.8420 36 1 0.9287 -0.1798 1.8338 37 1 1.1061 -1.5356 3.8587 38 1 2.0218 -4.0573 4.6717 39 1 4.3619 0.9432 5.2161 40 1 4.1784 2.2842 3.1821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341311381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:38 Heat of formation + Delta-G solvation = -69.602318 kcal Electronic energy + Delta-G solvation = -21871.247567 eV Core-core repulsion = 18650.611042 eV Total energy + Delta-G solvation = -3220.636525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30408 -39.16865 -38.15357 -36.87009 -35.56419 -33.03553 -31.69654 -31.52328 -30.91136 -28.30777 -26.66293 -24.39828 -23.44690 -22.87888 -22.40449 -20.33504 -19.34959 -18.10046 -17.75678 -17.37686 -16.81838 -16.37209 -16.24293 -15.97002 -15.30296 -15.09442 -14.74400 -14.54180 -14.40849 -13.77202 -13.60030 -13.41121 -13.27020 -13.17242 -12.95569 -12.83245 -12.79939 -12.60057 -12.52420 -12.32463 -11.90666 -11.87813 -11.72926 -11.24839 -11.18307 -11.06524 -10.52187 -9.54467 -9.43770 -9.26800 -8.68893 -6.46069 0.53532 1.13116 1.40503 1.45925 1.52211 2.06221 2.19043 2.25067 2.79240 3.51464 3.65385 3.83185 3.97150 4.03025 4.20682 4.28436 4.35862 4.39684 4.43276 4.55393 4.63261 4.74603 4.85750 4.89932 4.94994 5.02739 5.07578 5.13559 5.18904 5.26291 5.30998 5.37340 5.62571 5.71766 5.84193 5.98836 6.02259 6.26661 6.55079 6.58276 6.78484 6.82463 6.92135 7.43603 8.25809 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030112 B = 0.004365 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.626644 B = 6412.976756 C = 6848.774404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.067 3.933 3 N -0.604 5.604 4 C 0.083 3.917 5 C 0.081 3.919 6 H 0.094 0.906 7 C -0.171 4.171 8 O -0.581 6.581 9 C 0.579 3.421 10 O -0.596 6.596 11 C -0.282 4.282 12 C -0.086 4.086 13 C -0.190 4.190 14 C 0.100 3.900 15 C -0.486 4.486 16 H 0.080 0.920 17 C 0.038 3.962 18 N -0.810 5.810 19 Si 0.987 3.013 20 H -0.259 1.259 21 H -0.263 1.263 22 H -0.262 1.262 23 C -0.249 4.249 24 C -0.041 4.041 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.379 0.621 36 H 0.156 0.844 37 H 0.115 0.885 38 H 0.294 0.706 39 H 0.101 0.899 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 1.338 -12.239 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.054 4.054 3 N -0.334 5.334 4 C -0.040 4.040 5 C 0.022 3.978 6 H 0.112 0.888 7 C -0.229 4.229 8 O -0.388 6.388 9 C 0.373 3.627 10 O -0.480 6.480 11 C -0.286 4.286 12 C -0.104 4.104 13 C -0.209 4.209 14 C 0.097 3.903 15 C -0.514 4.514 16 H 0.098 0.902 17 C -0.180 4.180 18 N -0.434 5.434 19 Si 0.807 3.193 20 H -0.184 1.184 21 H -0.187 1.187 22 H -0.186 1.186 23 C -0.269 4.269 24 C -0.060 4.060 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.227 0.773 36 H 0.173 0.827 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.026 1.080 -12.435 13.115 hybrid contribution 0.096 0.218 0.884 0.916 sum -3.930 1.298 -11.551 12.270 Atomic orbital electron populations 1.22203 0.94346 1.03657 1.02372 1.22520 0.95532 0.82279 1.05119 1.47645 1.64081 1.14574 1.07128 1.22324 0.98983 0.97370 0.85320 1.22473 0.86304 0.99540 0.89516 0.88818 1.22345 1.03576 1.00509 0.96469 1.86552 1.50590 1.31900 1.69752 1.18359 0.74645 0.86034 0.83673 1.90557 1.53438 1.17411 1.86569 1.19286 1.07167 1.03858 0.98295 1.21745 0.98523 0.92843 0.97289 1.21078 1.01037 1.02384 0.96417 1.18145 0.88624 0.90375 0.93145 1.20003 1.39165 0.95230 0.96986 0.90186 1.26825 0.91181 0.98547 1.01414 1.69723 1.31858 1.13199 1.28648 0.85167 0.79920 0.77103 0.77063 1.18367 1.18724 1.18624 1.20889 1.03711 1.02748 0.99512 1.20447 0.96073 0.96477 0.92987 0.90417 0.89471 0.93575 0.89189 0.88578 0.86839 0.90896 0.91890 0.91746 0.89301 0.77307 0.82697 0.86730 0.89472 0.88057 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 9.16 71.98 0.66 -3.13 16 2 C 0.07 1.88 5.58 86.38 0.48 2.37 16 3 N -0.60 -19.56 2.44 -825.45 -2.01 -21.57 16 4 C 0.08 2.04 5.17 86.38 0.45 2.48 16 5 C 0.08 1.93 3.86 30.59 0.12 2.05 16 6 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 7 C -0.17 -2.78 9.53 71.98 0.69 -2.09 16 8 O -0.58 -18.62 12.30 -148.61 -1.83 -20.45 16 9 C 0.58 24.61 6.85 86.73 0.59 25.21 16 10 O -0.60 -27.68 15.53 -3.62 -0.06 -27.74 16 11 C -0.28 -13.25 5.59 -19.93 -0.11 -13.36 16 12 C -0.09 -3.86 7.39 22.25 0.16 -3.69 16 13 C -0.19 -9.56 8.59 22.47 0.19 -9.36 16 14 C 0.10 5.35 5.54 -21.28 -0.12 5.23 16 15 C -0.49 -25.32 9.05 23.46 0.21 -25.11 16 16 H 0.08 4.02 7.87 -2.91 -0.02 4.00 16 17 C 0.04 1.78 5.25 85.35 0.45 2.23 16 18 N -0.81 -39.33 10.88 21.87 0.24 -39.10 16 19 Si 0.99 35.92 29.58 68.60 2.03 37.95 16 20 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 22 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 23 C -0.25 -12.82 9.73 22.47 0.22 -12.60 16 24 C -0.04 -2.02 9.52 22.25 0.21 -1.81 16 25 H 0.08 1.40 7.77 -2.39 -0.02 1.38 16 26 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.05 1.23 7.11 -2.39 -0.02 1.22 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.10 3.35 3.91 -3.10 -0.01 3.34 16 30 H 0.11 1.95 7.70 -2.39 -0.02 1.93 16 31 H 0.07 1.99 7.34 -2.39 -0.02 1.97 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.38 11.26 8.68 -74.06 -0.64 10.62 16 36 H 0.16 5.79 2.74 -2.91 -0.01 5.78 16 37 H 0.11 5.83 6.27 -2.91 -0.02 5.81 16 38 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 39 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.10 4.73 7.92 -2.91 -0.02 4.71 16 Total: -1.00 -64.41 325.37 2.99 -61.42 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: 0.41 Total: 41.07 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 4.20 Total: -31.59 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -1.78 Total: -60.67 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.88 Total: -48.18 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Total: -64.41 2.99 -61.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341311381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.180 kcal (2) G-P(sol) polarization free energy of solvation -64.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds