Wall clock time and date at job start Mon Mar 30 2020 01:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47162 * 2 1 4 4 C 1.46494 * 120.00083 * 74.70737 * 3 2 1 5 5 C 1.53000 * 109.47458 * 89.99650 * 4 3 2 6 6 H 1.08994 * 109.47278 * 305.00305 * 5 4 3 7 7 C 1.52999 * 109.47333 * 184.99902 * 5 4 3 8 8 O 1.42898 * 109.46897 * 65.00046 * 5 4 3 9 9 C 1.34780 * 119.99746 * 254.70086 * 3 2 1 10 10 O 1.21582 * 119.99857 * 182.62322 * 9 3 2 11 11 C 1.47642 * 120.00040 * 2.63062 * 9 3 2 12 12 C 1.40014 * 119.89299 * 24.08722 * 11 9 3 13 13 C 1.36321 * 120.10162 * 179.71834 * 12 11 9 14 14 C 1.40885 * 119.89053 * 0.57416 * 13 12 11 15 15 C 1.41115 * 120.10338 * 179.67664 * 14 13 12 16 16 H 1.07999 * 120.00330 * 162.52526 * 15 14 13 17 17 C 1.40229 * 119.99609 * 342.52359 * 15 14 13 18 18 N 1.30641 * 120.00263 * 330.96218 * 17 15 14 19 19 Si 1.86802 * 119.99560 * 150.96536 * 17 15 14 20 20 H 1.48497 * 109.47262 * 94.99880 * 19 17 15 21 21 H 1.48503 * 109.46786 * 214.99417 * 19 17 15 22 22 H 1.48494 * 109.47435 * 334.99345 * 19 17 15 23 23 C 1.40891 * 119.79825 * 359.69382 * 14 13 12 24 24 C 1.36322 * 119.88569 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47352 * 300.00184 * 1 2 3 26 26 H 1.09002 * 109.47342 * 60.00215 * 1 2 3 27 27 H 1.09002 * 109.47574 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46832 * 239.99305 * 2 1 3 29 29 H 1.09010 * 109.46577 * 120.00093 * 2 1 3 30 30 H 1.09000 * 109.47182 * 329.99527 * 4 3 2 31 31 H 1.09000 * 109.47356 * 210.00189 * 4 3 2 32 32 H 1.09004 * 109.47287 * 300.00405 * 7 5 4 33 33 H 1.09000 * 109.47382 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.47445 * 60.00017 * 7 5 4 35 35 H 0.96704 * 114.00393 * 59.99735 * 8 5 4 36 36 H 1.08000 * 119.94965 * 359.97438 * 12 11 9 37 37 H 1.08001 * 120.05505 * 180.24562 * 13 12 11 38 38 H 0.96998 * 119.99963 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.05608 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.94340 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9470 2.1833 1.2237 5 6 3.2340 1.9987 2.0303 6 1 3.3977 0.9372 2.2154 7 6 3.1095 2.7360 3.3652 8 8 4.3377 2.5296 1.2942 9 6 2.5333 1.9138 -1.1259 10 8 2.9823 3.0436 -1.1137 11 6 2.5522 1.1253 -2.3740 12 6 1.6340 0.0840 -2.5555 13 6 1.6438 -0.6430 -3.7086 14 6 2.5878 -0.3529 -4.7134 15 6 2.6064 -1.1071 -5.9060 16 1 3.1174 -0.7262 -6.7779 17 6 1.9615 -2.3512 -5.9589 18 7 1.8459 -3.0736 -4.8766 19 14 1.2676 -2.9753 -7.5771 20 1 2.2624 -3.8612 -8.2334 21 1 0.0198 -3.7380 -7.3192 22 1 0.9689 -1.8231 -8.4649 23 6 3.5133 0.6922 -4.5239 24 6 3.4920 1.4174 -3.3697 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.0944 1.8600 1.8209 31 1 1.8296 3.2350 0.9625 32 1 2.9458 3.7976 3.1801 33 1 4.0265 2.6048 3.9396 34 1 2.2675 2.3311 3.9268 35 1 4.2596 3.4723 1.0932 36 1 0.9141 -0.1410 -1.7824 37 1 0.9326 -1.4435 -3.8494 38 1 1.3994 -3.9340 -4.9132 39 1 4.2390 0.9179 -5.2912 40 1 4.2014 2.2186 -3.2233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341311389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:41 Heat of formation + Delta-G solvation = -49.227844 kcal Electronic energy + Delta-G solvation = -21844.113404 eV Core-core repulsion = 18624.360383 eV Total energy + Delta-G solvation = -3219.753021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.73598 -37.57657 -36.63613 -35.44499 -33.90148 -31.76223 -30.22048 -29.97615 -29.24084 -26.85688 -25.19346 -23.04440 -22.03670 -21.07082 -20.98161 -18.78552 -17.57293 -16.52769 -16.40662 -15.92658 -15.40152 -14.99077 -14.76119 -14.49060 -13.89748 -13.49746 -13.28430 -13.08612 -12.69486 -12.57521 -12.23273 -12.08588 -12.04611 -11.71353 -11.69160 -11.39882 -11.27847 -11.17937 -10.97838 -10.82465 -10.79543 -10.41750 -10.06846 -10.03097 -9.46475 -9.08490 -8.78222 -8.10157 -7.62203 -7.55284 -7.11615 -4.54019 2.34099 2.88793 2.94145 3.02852 3.06553 3.55636 3.72698 3.86641 4.49771 4.59517 4.88173 5.10691 5.16748 5.25806 5.30169 5.47157 5.55464 5.64171 5.67778 5.76013 5.90336 5.98096 5.98770 6.13757 6.23364 6.26479 6.37064 6.45012 6.78130 6.85298 7.01314 7.14426 7.18827 7.46876 7.69367 7.84396 7.90652 7.94613 8.08332 8.20966 8.41578 8.65859 8.80965 9.14662 9.79679 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.004329 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.778225 B = 6465.723084 C = 7000.368625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 N -0.613 5.613 4 C 0.088 3.912 5 C 0.086 3.914 6 H 0.093 0.907 7 C -0.182 4.182 8 O -0.551 6.551 9 C 0.580 3.420 10 O -0.570 6.570 11 C -0.289 4.289 12 C -0.095 4.095 13 C -0.193 4.193 14 C 0.126 3.874 15 C -0.444 4.444 16 H 0.085 0.915 17 C 0.082 3.918 18 N -0.756 5.756 19 Si 0.905 3.095 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.256 1.256 23 C -0.245 4.245 24 C -0.019 4.019 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.129 0.871 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.376 0.624 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.287 0.713 39 H 0.096 0.904 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 1.985 10.083 10.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.049 4.049 3 N -0.346 5.346 4 C -0.036 4.036 5 C 0.025 3.975 6 H 0.111 0.889 7 C -0.240 4.240 8 O -0.357 6.357 9 C 0.377 3.623 10 O -0.452 6.452 11 C -0.293 4.293 12 C -0.113 4.113 13 C -0.212 4.212 14 C 0.122 3.878 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.141 4.141 18 N -0.377 5.377 19 Si 0.728 3.272 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.179 1.179 23 C -0.264 4.264 24 C -0.038 4.038 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.224 0.776 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.390 1.722 10.240 10.923 hybrid contribution -0.636 0.025 -0.511 0.816 sum -4.026 1.747 9.728 10.673 Atomic orbital electron populations 1.22264 0.96624 1.02253 1.02137 1.22470 0.93810 0.83619 1.05029 1.47647 1.63792 1.13369 1.09796 1.22028 0.97355 0.97462 0.86797 1.22289 0.87196 0.98430 0.89571 0.88932 1.22463 1.02398 1.01066 0.98096 1.86581 1.43190 1.29624 1.76263 1.18590 0.75046 0.85746 0.82955 1.90563 1.48620 1.20061 1.85922 1.18822 1.08174 1.05750 0.96538 1.21520 0.98040 0.94123 0.97589 1.20937 1.02041 1.03161 0.95059 1.17743 0.88360 0.89866 0.91793 1.19832 1.28070 1.00812 0.98355 0.89653 1.26117 0.93386 0.96224 0.98412 1.69810 1.27878 1.09473 1.30580 0.86341 0.79239 0.79612 0.82014 1.19191 1.19632 1.17904 1.20611 1.03579 1.03560 0.98659 1.20297 0.95252 0.95848 0.92410 0.92868 0.91501 0.91475 0.85399 0.92371 0.90756 0.90177 0.92307 0.91862 0.91822 0.77614 0.85578 0.86654 0.90134 0.88625 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.06 37.16 0.34 -1.93 16 2 C 0.07 1.13 5.59 -4.04 -0.02 1.10 16 3 N -0.61 -10.63 2.50 -174.88 -0.44 -11.06 16 4 C 0.09 1.22 5.05 -4.04 -0.02 1.20 16 5 C 0.09 1.14 3.83 -26.73 -0.10 1.03 16 6 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 7 C -0.18 -1.78 9.53 37.16 0.35 -1.42 16 8 O -0.55 -9.08 12.13 -46.01 -0.56 -9.64 16 9 C 0.58 12.59 7.16 -12.42 -0.09 12.50 16 10 O -0.57 -13.35 14.98 -5.49 -0.08 -13.43 16 11 C -0.29 -6.74 5.62 -104.73 -0.59 -7.33 16 12 C -0.09 -2.11 7.42 -39.61 -0.29 -2.40 16 13 C -0.19 -4.72 8.73 -39.27 -0.34 -5.06 16 14 C 0.13 3.23 5.63 -106.80 -0.60 2.63 16 15 C -0.44 -11.10 8.99 -37.74 -0.34 -11.44 16 16 H 0.09 2.05 7.99 -52.49 -0.42 1.63 16 17 C 0.08 1.90 4.93 -17.31 -0.09 1.82 16 18 N -0.76 -17.74 11.22 55.56 0.62 -17.12 16 19 Si 0.91 17.04 29.65 -169.99 -5.04 12.00 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 C -0.24 -6.05 9.73 -39.27 -0.38 -6.44 16 24 C -0.02 -0.46 9.52 -39.61 -0.38 -0.83 16 25 H 0.05 0.60 7.41 -51.93 -0.38 0.22 16 26 H 0.07 0.98 7.04 -51.93 -0.37 0.61 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.13 2.32 3.97 -53.15 -0.21 2.11 16 29 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 30 H 0.07 0.83 7.30 -51.93 -0.38 0.45 16 31 H 0.08 1.19 7.46 -51.93 -0.39 0.80 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.38 5.56 8.68 45.56 0.40 5.96 16 36 H 0.13 2.40 2.40 -52.49 -0.13 2.28 16 37 H 0.12 2.83 6.07 -52.49 -0.32 2.51 16 38 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.10 2.27 7.82 -52.49 -0.41 1.86 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -28.84 323.92 -7.87 -36.71 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -4.70 Total: 14.24 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.55 Total: -16.57 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.19 Total: -28.18 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.64 Total: -23.07 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.04 Total: 12.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.84 -7.87 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341311389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.521 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds