Wall clock time and date at job start Mon Mar 30 2020 01:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47162 * 2 1 4 4 C 1.46494 * 120.00083 * 74.70737 * 3 2 1 5 5 C 1.53000 * 109.47458 * 89.99650 * 4 3 2 6 6 H 1.08994 * 109.47278 * 305.00305 * 5 4 3 7 7 C 1.52999 * 109.47333 * 184.99902 * 5 4 3 8 8 O 1.42898 * 109.46897 * 65.00046 * 5 4 3 9 9 C 1.34780 * 119.99746 * 254.70086 * 3 2 1 10 10 O 1.21582 * 119.99857 * 182.62322 * 9 3 2 11 11 C 1.47642 * 120.00040 * 2.63062 * 9 3 2 12 12 C 1.40014 * 119.89299 * 24.08722 * 11 9 3 13 13 C 1.36321 * 120.10162 * 179.71834 * 12 11 9 14 14 C 1.40885 * 119.89053 * 0.57416 * 13 12 11 15 15 C 1.41115 * 120.10338 * 179.67664 * 14 13 12 16 16 H 1.07999 * 120.00330 * 162.52526 * 15 14 13 17 17 C 1.40229 * 119.99609 * 342.52359 * 15 14 13 18 18 N 1.30641 * 120.00263 * 330.96218 * 17 15 14 19 19 Si 1.86802 * 119.99560 * 150.96536 * 17 15 14 20 20 H 1.48497 * 109.47262 * 94.99880 * 19 17 15 21 21 H 1.48503 * 109.46786 * 214.99417 * 19 17 15 22 22 H 1.48494 * 109.47435 * 334.99345 * 19 17 15 23 23 C 1.40891 * 119.79825 * 359.69382 * 14 13 12 24 24 C 1.36322 * 119.88569 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47352 * 300.00184 * 1 2 3 26 26 H 1.09002 * 109.47342 * 60.00215 * 1 2 3 27 27 H 1.09002 * 109.47574 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46832 * 239.99305 * 2 1 3 29 29 H 1.09010 * 109.46577 * 120.00093 * 2 1 3 30 30 H 1.09000 * 109.47182 * 329.99527 * 4 3 2 31 31 H 1.09000 * 109.47356 * 210.00189 * 4 3 2 32 32 H 1.09004 * 109.47287 * 300.00405 * 7 5 4 33 33 H 1.09000 * 109.47382 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.47445 * 60.00017 * 7 5 4 35 35 H 0.96704 * 114.00393 * 59.99735 * 8 5 4 36 36 H 1.08000 * 119.94965 * 359.97438 * 12 11 9 37 37 H 1.08001 * 120.05505 * 180.24562 * 13 12 11 38 38 H 0.96998 * 119.99963 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.05608 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.94340 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9470 2.1833 1.2237 5 6 3.2340 1.9987 2.0303 6 1 3.3977 0.9372 2.2154 7 6 3.1095 2.7360 3.3652 8 8 4.3377 2.5296 1.2942 9 6 2.5333 1.9138 -1.1259 10 8 2.9823 3.0436 -1.1137 11 6 2.5522 1.1253 -2.3740 12 6 1.6340 0.0840 -2.5555 13 6 1.6438 -0.6430 -3.7086 14 6 2.5878 -0.3529 -4.7134 15 6 2.6064 -1.1071 -5.9060 16 1 3.1174 -0.7262 -6.7779 17 6 1.9615 -2.3512 -5.9589 18 7 1.8459 -3.0736 -4.8766 19 14 1.2676 -2.9753 -7.5771 20 1 2.2624 -3.8612 -8.2334 21 1 0.0198 -3.7380 -7.3192 22 1 0.9689 -1.8231 -8.4649 23 6 3.5133 0.6922 -4.5239 24 6 3.4920 1.4174 -3.3697 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.0944 1.8600 1.8209 31 1 1.8296 3.2350 0.9625 32 1 2.9458 3.7976 3.1801 33 1 4.0265 2.6048 3.9396 34 1 2.2675 2.3311 3.9268 35 1 4.2596 3.4723 1.0932 36 1 0.9141 -0.1410 -1.7824 37 1 0.9326 -1.4435 -3.8494 38 1 1.3994 -3.9340 -4.9132 39 1 4.2390 0.9179 -5.2912 40 1 4.2014 2.2186 -3.2233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341311389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:40 Heat of formation + Delta-G solvation = -66.564056 kcal Electronic energy + Delta-G solvation = -21844.865159 eV Core-core repulsion = 18624.360383 eV Total energy + Delta-G solvation = -3220.504776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27667 -39.14086 -38.11912 -36.89717 -35.67316 -33.04024 -31.72018 -31.49664 -30.88758 -28.33005 -26.67010 -24.35679 -23.44298 -22.85623 -22.40952 -20.31655 -19.40341 -18.07325 -17.74848 -17.40334 -16.85233 -16.27129 -16.22063 -15.91295 -15.36868 -15.08634 -14.74373 -14.57870 -14.41757 -13.80620 -13.67087 -13.39555 -13.24832 -13.06784 -12.95241 -12.84796 -12.81521 -12.59092 -12.49193 -12.29436 -11.89500 -11.87172 -11.77471 -11.22444 -11.21376 -10.87294 -10.47229 -9.58113 -9.44143 -9.35253 -8.87073 -6.42957 0.55827 1.16440 1.36773 1.42910 1.55439 2.10321 2.16564 2.24781 2.74032 3.53669 3.68561 3.84269 4.00802 4.02619 4.22892 4.28619 4.35281 4.41308 4.45663 4.57124 4.63469 4.74177 4.87150 4.90840 4.95421 5.01812 5.03988 5.14732 5.20080 5.26566 5.32023 5.37403 5.59463 5.74266 5.88004 5.98175 6.04650 6.23562 6.54441 6.59910 6.77901 6.83610 6.93335 7.50384 8.08453 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.004329 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.778225 B = 6465.723084 C = 7000.368625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 N -0.606 5.606 4 C 0.085 3.915 5 C 0.082 3.918 6 H 0.091 0.909 7 C -0.171 4.171 8 O -0.580 6.580 9 C 0.574 3.426 10 O -0.596 6.596 11 C -0.304 4.304 12 C -0.081 4.081 13 C -0.214 4.214 14 C 0.099 3.901 15 C -0.476 4.476 16 H 0.083 0.917 17 C 0.048 3.952 18 N -0.778 5.778 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.257 1.257 22 H -0.260 1.260 23 C -0.264 4.264 24 C -0.032 4.032 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.379 0.621 36 H 0.160 0.840 37 H 0.112 0.888 38 H 0.301 0.699 39 H 0.098 0.902 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 0.959 11.696 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.054 4.054 3 N -0.337 5.337 4 C -0.038 4.038 5 C 0.022 3.978 6 H 0.109 0.891 7 C -0.229 4.229 8 O -0.387 6.387 9 C 0.369 3.631 10 O -0.479 6.479 11 C -0.308 4.308 12 C -0.099 4.099 13 C -0.233 4.233 14 C 0.096 3.904 15 C -0.502 4.502 16 H 0.101 0.899 17 C -0.174 4.174 18 N -0.400 5.400 19 Si 0.800 3.200 20 H -0.183 1.183 21 H -0.181 1.181 22 H -0.184 1.184 23 C -0.284 4.284 24 C -0.051 4.051 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.228 0.772 36 H 0.177 0.823 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.235 0.680 11.903 13.021 hybrid contribution -0.035 0.325 -0.885 0.944 sum -5.271 1.005 11.018 12.255 Atomic orbital electron populations 1.22212 0.94275 1.03724 1.02472 1.22533 0.95638 0.82334 1.04876 1.47652 1.62165 1.14253 1.09633 1.22306 0.99308 0.96546 0.85606 1.22450 0.85808 0.98746 0.90798 0.89131 1.22350 1.03498 1.01021 0.96011 1.86546 1.44917 1.30095 1.77128 1.18403 0.75644 0.85323 0.83749 1.90538 1.49936 1.20976 1.86498 1.19182 1.07950 1.06240 0.97463 1.21872 0.97875 0.92715 0.97429 1.20992 1.02358 1.04072 0.95907 1.18088 0.89058 0.90530 0.92771 1.20088 1.29791 1.02135 0.98217 0.89921 1.26916 0.92853 0.95584 1.02086 1.69795 1.27612 1.10144 1.32469 0.85215 0.78884 0.78826 0.77075 1.18307 1.18136 1.18393 1.20730 1.04172 1.04238 0.99216 1.20434 0.95860 0.95952 0.92869 0.90245 0.93369 0.89488 0.88523 0.89498 0.86884 0.91155 0.91776 0.91797 0.89362 0.77245 0.82290 0.86980 0.88783 0.88365 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 9.06 71.98 0.65 -3.16 16 2 C 0.07 1.93 5.59 86.38 0.48 2.41 16 3 N -0.61 -20.03 2.50 -825.46 -2.06 -22.09 16 4 C 0.08 2.14 5.05 86.38 0.44 2.58 16 5 C 0.08 1.99 3.83 30.59 0.12 2.11 16 6 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 7 C -0.17 -2.81 9.53 71.98 0.69 -2.12 16 8 O -0.58 -18.89 12.13 -138.67 -1.68 -20.57 16 9 C 0.57 25.01 7.16 86.73 0.62 25.63 16 10 O -0.60 -28.32 14.98 6.33 0.09 -28.23 16 11 C -0.30 -14.55 5.62 -19.93 -0.11 -14.66 16 12 C -0.08 -3.66 7.42 22.25 0.17 -3.50 16 13 C -0.21 -10.75 8.73 22.47 0.20 -10.55 16 14 C 0.10 5.27 5.63 -21.28 -0.12 5.15 16 15 C -0.48 -24.53 8.99 23.46 0.21 -24.31 16 16 H 0.08 4.13 7.99 -2.91 -0.02 4.11 16 17 C 0.05 2.21 4.93 85.35 0.42 2.63 16 18 N -0.78 -36.49 11.22 21.87 0.25 -36.25 16 19 Si 0.98 34.45 29.65 68.60 2.03 36.48 16 20 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 21 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 22 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 23 C -0.26 -13.75 9.73 22.47 0.22 -13.53 16 24 C -0.03 -1.62 9.52 22.25 0.21 -1.41 16 25 H 0.08 1.41 7.41 -2.39 -0.02 1.39 16 26 H 0.05 1.29 7.04 -2.39 -0.02 1.27 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 3.40 3.97 -3.54 -0.01 3.39 16 29 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.11 2.00 7.30 -2.39 -0.02 1.98 16 31 H 0.07 1.96 7.46 -2.39 -0.02 1.94 16 32 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.38 11.31 8.68 -74.05 -0.64 10.66 16 36 H 0.16 5.95 2.40 -2.91 -0.01 5.94 16 37 H 0.11 5.60 6.07 -2.91 -0.02 5.58 16 38 H 0.30 12.30 8.29 -92.71 -0.77 11.53 16 39 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 40 H 0.09 4.70 7.82 -2.91 -0.02 4.68 16 Total: -1.00 -64.70 323.92 3.23 -61.47 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.41 Total: 41.92 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 4.19 Total: -32.73 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -1.81 Total: -58.34 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.59 Total: -48.80 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Total: -64.70 3.23 -61.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341311389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.094 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds