Wall clock time and date at job start Mon Mar 30 2020 01:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47334 * 2 1 4 4 C 1.46502 * 119.99557 * 279.32557 * 3 2 1 5 5 C 1.52999 * 109.46589 * 269.99364 * 4 3 2 6 6 H 1.09004 * 109.47420 * 60.00699 * 5 4 3 7 7 C 1.53006 * 109.46914 * 180.02562 * 5 4 3 8 8 O 1.42900 * 109.47651 * 300.00362 * 5 4 3 9 9 C 1.34771 * 120.00014 * 99.31599 * 3 2 1 10 10 O 1.21551 * 119.99965 * 178.28428 * 9 3 2 11 11 C 1.47888 * 120.00362 * 358.29199 * 9 3 2 12 12 C 1.39929 * 120.02052 * 310.51223 * 11 9 3 13 13 C 1.38322 * 120.35620 * 180.25381 * 12 11 9 14 14 C 1.37758 * 120.41495 * 0.04449 * 13 12 11 15 15 C 1.40747 * 120.03617 * 359.95320 * 14 13 12 16 16 C 1.41437 * 120.17703 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99927 * 330.40176 * 16 15 14 18 18 C 1.39938 * 120.00255 * 150.39605 * 16 15 14 19 19 N 1.30821 * 119.99812 * 348.52144 * 18 16 15 20 20 Si 1.86799 * 119.99838 * 168.51726 * 18 16 15 21 21 H 1.48508 * 109.47052 * 90.00480 * 20 18 16 22 22 H 1.48502 * 109.46920 * 209.99965 * 20 18 16 23 23 H 1.48494 * 109.47557 * 330.00316 * 20 18 16 24 24 C 1.38991 * 120.03051 * 130.78730 * 11 9 3 25 25 H 1.09004 * 109.47111 * 80.31560 * 1 2 3 26 26 H 1.09005 * 109.47176 * 200.30755 * 1 2 3 27 27 H 1.08998 * 109.47202 * 320.31173 * 1 2 3 28 28 H 1.09007 * 109.47328 * 239.99728 * 2 1 3 29 29 H 1.09008 * 109.47356 * 119.99892 * 2 1 3 30 30 H 1.08995 * 109.47273 * 29.99222 * 4 3 2 31 31 H 1.09001 * 109.46692 * 150.00132 * 4 3 2 32 32 H 1.09000 * 109.46972 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.46721 * 300.00186 * 7 5 4 34 34 H 1.08995 * 109.46946 * 59.99780 * 7 5 4 35 35 H 0.96699 * 114.00386 * 180.02562 * 8 5 4 36 36 H 1.07997 * 119.81795 * 0.27429 * 12 11 9 37 37 H 1.08001 * 119.79743 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.98056 * 179.97438 * 14 13 12 39 39 H 0.97003 * 120.00124 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.19750 * 359.69919 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0687 2.1403 -1.2520 5 6 3.4283 1.9300 -1.9214 6 1 3.5690 0.8701 -2.1333 7 6 3.4812 2.7233 -3.2288 8 8 4.4646 2.3828 -1.0479 9 6 2.4211 1.9536 1.1518 10 8 2.8556 3.0888 1.1469 11 6 2.3347 1.2004 2.4216 12 6 1.1449 0.5525 2.7717 13 6 1.0548 -0.1495 3.9601 14 6 2.1343 -0.2183 4.8131 15 6 3.3394 0.4270 4.4777 16 6 4.4498 0.3578 5.3510 17 1 4.2945 0.2594 6.4153 18 6 5.7497 0.4167 4.8361 19 7 5.9483 0.3095 3.5475 20 14 7.2012 0.6487 5.9888 21 1 7.7018 -0.6788 6.4277 22 1 8.2845 1.3766 5.2803 23 1 6.7715 1.4324 7.1746 24 6 3.4334 1.1403 3.2708 25 1 -0.3633 0.1729 -1.0131 26 1 -0.3634 -0.9638 0.3567 27 1 -0.3633 0.7908 0.6563 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.2783 1.7949 -1.9184 31 1 1.9281 3.2002 -1.0401 32 1 4.4496 2.5731 -3.7059 33 1 2.6907 2.3782 -3.8953 34 1 3.3406 3.7831 -3.0166 35 1 5.3559 2.2801 -1.4085 36 1 0.2926 0.6006 2.1103 37 1 0.1319 -0.6458 4.2216 38 1 2.0561 -0.7680 5.7394 39 1 6.8493 0.3507 3.1905 40 1 4.3539 1.6385 3.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341316934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:43 Heat of formation + Delta-G solvation = -67.262987 kcal Electronic energy + Delta-G solvation = -22108.930983 eV Core-core repulsion = 18888.395899 eV Total energy + Delta-G solvation = -3220.535084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.55126 -37.43931 -36.60880 -35.25792 -33.59401 -31.74274 -29.99662 -29.94857 -29.32965 -26.31708 -25.22127 -23.11628 -22.20385 -20.91405 -20.82907 -18.56193 -17.53879 -16.97068 -16.11420 -15.80454 -15.04321 -14.95418 -14.88875 -14.05364 -13.86729 -13.53837 -13.25461 -12.97917 -12.64985 -12.49827 -12.38853 -12.14884 -11.95960 -11.92356 -11.61310 -11.38531 -11.17284 -11.06672 -10.90520 -10.74995 -10.52314 -10.34921 -9.96020 -9.76757 -9.56998 -9.19022 -8.80537 -8.14962 -7.49964 -7.38005 -6.69627 -4.36740 2.48548 2.88212 3.11298 3.15070 3.19747 3.50909 3.83587 3.97864 4.43503 4.67501 4.98004 5.10490 5.16860 5.27472 5.29252 5.50587 5.59501 5.62904 5.72736 5.75994 5.87842 5.95149 5.97436 6.16027 6.20590 6.22992 6.32836 6.55257 6.76232 7.05511 7.06207 7.15661 7.29137 7.47309 7.76792 7.89298 7.96253 7.97469 8.10719 8.24873 8.57647 8.88861 8.90871 9.06901 10.25607 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.006098 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.344572 B = 4590.557793 C = 5822.740830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.612 5.612 4 C 0.125 3.875 5 C 0.083 3.917 6 H 0.049 0.951 7 C -0.182 4.182 8 O -0.539 6.539 9 C 0.575 3.425 10 O -0.532 6.532 11 C -0.120 4.120 12 C -0.221 4.221 13 C -0.102 4.102 14 C -0.210 4.210 15 C 0.103 3.897 16 C -0.464 4.464 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.798 5.798 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.096 4.096 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.367 0.633 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.281 0.719 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 -1.291 -11.312 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.346 5.346 4 C 0.001 3.999 5 C 0.023 3.977 6 H 0.067 0.933 7 C -0.241 4.241 8 O -0.343 6.343 9 C 0.366 3.634 10 O -0.407 6.407 11 C -0.123 4.123 12 C -0.241 4.241 13 C -0.120 4.120 14 C -0.230 4.230 15 C 0.101 3.899 16 C -0.494 4.494 17 H 0.097 0.903 18 C -0.144 4.144 19 N -0.424 5.424 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.116 4.116 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.213 0.787 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.109 -0.538 -11.094 12.226 hybrid contribution 1.174 -0.265 -0.129 1.211 sum -3.935 -0.803 -11.223 11.920 Atomic orbital electron populations 1.22357 0.96552 1.02627 1.01239 1.21607 0.93820 0.82901 1.03577 1.47781 1.66011 1.13856 1.06946 1.21351 0.94230 0.98492 0.85792 1.22211 0.90016 0.96375 0.89144 0.93268 1.22472 1.02073 1.01842 0.97678 1.86856 1.16582 1.86446 1.44398 1.18840 0.75134 0.85955 0.83510 1.90687 1.44396 1.19032 1.86616 1.19477 0.96511 1.01812 0.94478 1.20766 0.97030 1.06666 0.99598 1.20444 0.97113 0.99611 0.94859 1.21143 0.95400 1.05655 1.00809 1.17564 0.92000 0.88505 0.91863 1.19537 0.89943 1.44993 0.94947 0.90329 1.25890 1.00681 0.92341 0.95481 1.69764 1.23889 1.35695 1.13012 0.86274 0.80137 0.79163 0.80910 1.19578 1.20129 1.18517 1.21468 0.96734 0.98818 0.94563 0.93339 0.91620 0.91496 0.91945 0.88297 0.90051 0.89716 0.92407 0.91903 0.91662 0.78730 0.87817 0.89025 0.88752 0.90842 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.05 37.16 0.34 -1.78 16 2 C 0.10 1.58 5.60 -4.04 -0.02 1.56 16 3 N -0.61 -10.97 2.43 -174.78 -0.42 -11.39 16 4 C 0.12 1.85 5.17 -4.04 -0.02 1.83 16 5 C 0.08 1.14 3.85 -26.73 -0.10 1.04 16 6 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 7 C -0.18 -1.87 9.53 37.16 0.35 -1.51 16 8 O -0.54 -9.37 11.87 -45.94 -0.55 -9.91 16 9 C 0.57 13.22 6.75 -12.31 -0.08 13.14 16 10 O -0.53 -13.89 15.75 -5.39 -0.08 -13.98 16 11 C -0.12 -2.90 4.74 -105.03 -0.50 -3.40 16 12 C -0.22 -4.75 7.69 -38.92 -0.30 -5.05 16 13 C -0.10 -2.20 10.01 -39.73 -0.40 -2.60 16 14 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 15 C 0.10 2.77 5.53 -106.87 -0.59 2.18 16 16 C -0.46 -12.45 9.05 -37.73 -0.34 -12.79 16 17 H 0.08 2.01 7.87 -52.48 -0.41 1.60 16 18 C 0.07 1.88 5.23 -17.35 -0.09 1.79 16 19 N -0.80 -21.23 10.94 55.55 0.61 -20.62 16 20 Si 0.91 19.21 29.57 -169.99 -5.03 14.18 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 C -0.10 -2.60 8.32 -38.45 -0.32 -2.92 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 28 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.10 1.77 5.68 -51.92 -0.29 1.47 16 30 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.08 1.41 7.44 -51.93 -0.39 1.03 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.37 4.76 9.08 45.56 0.41 5.18 16 36 H 0.10 1.93 4.22 -52.49 -0.22 1.71 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 40 H 0.13 3.72 6.31 -52.48 -0.33 3.39 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -31.96 328.42 -7.89 -39.85 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.91 Total: 10.89 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.46 Total: -13.97 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.18 Total: -32.01 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.63 Total: -23.89 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.96 -7.89 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341316934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.409 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds