Wall clock time and date at job start Mon Mar 30 2020 01:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46875 * 2 1 4 4 C 1.46504 * 119.99810 * 276.15909 * 3 2 1 5 5 C 1.53006 * 109.46838 * 267.28455 * 4 3 2 6 6 H 1.08999 * 109.47041 * 306.48763 * 5 4 3 7 7 C 1.52995 * 109.46947 * 186.48893 * 5 4 3 8 8 O 1.42901 * 109.47026 * 66.49077 * 5 4 3 9 9 C 1.34779 * 120.00187 * 96.15708 * 3 2 1 10 10 O 1.21545 * 119.99758 * 182.46371 * 9 3 2 11 11 C 1.47888 * 119.99794 * 2.46625 * 9 3 2 12 12 C 1.39920 * 120.02456 * 56.58141 * 11 9 3 13 13 C 1.38329 * 120.35757 * 179.78432 * 12 11 9 14 14 C 1.37755 * 120.40805 * 0.46602 * 13 12 11 15 15 C 1.40747 * 120.04131 * 359.79115 * 14 13 12 16 16 C 1.41439 * 120.17524 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00708 * 325.24956 * 16 15 14 18 18 C 1.39947 * 119.99661 * 145.24509 * 16 15 14 19 19 N 1.30823 * 119.99770 * 348.13376 * 18 16 15 20 20 Si 1.86798 * 119.99790 * 168.13694 * 18 16 15 21 21 H 1.48493 * 109.47338 * 90.00052 * 20 18 16 22 22 H 1.48504 * 109.46601 * 209.99930 * 20 18 16 23 23 H 1.48499 * 109.47134 * 329.99437 * 20 18 16 24 24 C 1.38992 * 120.02016 * 236.85508 * 11 9 3 25 25 H 1.09001 * 109.46858 * 65.29745 * 1 2 3 26 26 H 1.08996 * 109.47207 * 185.29214 * 1 2 3 27 27 H 1.08994 * 109.47565 * 305.29894 * 1 2 3 28 28 H 1.08993 * 109.47547 * 239.99518 * 2 1 3 29 29 H 1.09002 * 109.46589 * 119.98996 * 2 1 3 30 30 H 1.09001 * 109.47140 * 147.28419 * 4 3 2 31 31 H 1.08993 * 109.46995 * 27.28071 * 4 3 2 32 32 H 1.09000 * 109.47177 * 59.99839 * 7 5 4 33 33 H 1.08998 * 109.47044 * 180.02562 * 7 5 4 34 34 H 1.08999 * 109.47144 * 299.99807 * 7 5 4 35 35 H 0.96696 * 114.00173 * 59.99538 * 8 5 4 36 36 H 1.08001 * 119.82072 * 0.02562 * 12 11 9 37 37 H 1.07999 * 119.79818 * 180.23784 * 13 12 11 38 38 H 1.08002 * 119.97660 * 179.76221 * 14 13 12 39 39 H 0.97003 * 120.00097 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.20892 * 359.95359 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1341 2.1172 -1.2615 5 6 3.5483 1.9505 -1.8212 6 1 4.2758 2.2339 -1.0606 7 6 3.7195 2.8464 -3.0495 8 8 3.7554 0.5866 -2.1938 9 6 2.3610 1.9749 1.1605 10 8 2.7234 3.1351 1.1657 11 6 2.2960 1.2147 2.4273 12 6 3.0098 0.0190 2.5637 13 6 2.9574 -0.6953 3.7471 14 6 2.1948 -0.2431 4.8014 15 6 1.4658 0.9548 4.6809 16 6 0.6814 1.4215 5.7613 17 1 0.1762 0.7173 6.4057 18 6 0.5600 2.7959 5.9955 19 7 1.3448 3.6373 5.3728 20 14 -0.7224 3.4289 7.1972 21 1 -0.1326 3.5011 8.5581 22 1 -1.1679 4.7822 6.7783 23 1 -1.8863 2.5067 7.2104 24 6 1.5213 1.6846 3.4813 25 1 -0.3633 0.4295 -0.9336 26 1 -0.3633 -1.0232 0.0948 27 1 -0.3634 0.5938 0.8387 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.9355 3.1744 -1.0849 31 1 1.4115 1.7264 -1.9777 32 1 3.5615 3.8868 -2.7653 33 1 4.7268 2.7273 -3.4485 34 1 2.9920 2.5630 -3.8101 35 1 3.1417 0.2657 -2.8687 36 1 3.6079 -0.3462 1.7419 37 1 3.5150 -1.6152 3.8439 38 1 2.1560 -0.8083 5.7209 39 1 1.2609 4.5899 5.5354 40 1 0.9658 2.6051 3.3792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341316935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:45 Heat of formation + Delta-G solvation = -95.895457 kcal Electronic energy + Delta-G solvation = -21908.273277 eV Core-core repulsion = 18686.496596 eV Total energy + Delta-G solvation = -3221.776681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29677 -39.15659 -38.36531 -36.61534 -35.48299 -32.91293 -31.91633 -31.39969 -30.94868 -27.69935 -27.06855 -24.66330 -23.57755 -22.79177 -22.59937 -20.38980 -19.20468 -17.90705 -17.69572 -17.08366 -17.01465 -16.60128 -16.33808 -16.10402 -15.29595 -15.14280 -14.66259 -14.58507 -14.41175 -14.20535 -13.65913 -13.56779 -13.47519 -13.09288 -12.98086 -12.81893 -12.73339 -12.58209 -12.49091 -12.25100 -12.02571 -11.92939 -11.85697 -11.51051 -11.37165 -11.08085 -10.65890 -9.65135 -9.38184 -9.28320 -8.61299 -6.41729 0.57939 0.97940 1.36336 1.44584 1.51502 1.75891 2.08140 2.20608 2.73347 3.45853 3.58817 3.65532 3.87568 4.05082 4.15564 4.23466 4.39251 4.43374 4.50848 4.55561 4.64752 4.69899 4.84977 4.86514 4.89657 5.04182 5.08492 5.12731 5.16641 5.21535 5.30568 5.36505 5.50966 5.67469 5.82783 5.93033 6.01320 6.26629 6.35697 6.58445 6.90391 6.90788 6.92723 7.18192 8.37986 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.004905 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.747528 B = 5707.284686 C = 6148.780065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.594 5.594 4 C 0.082 3.918 5 C 0.095 3.905 6 H 0.060 0.940 7 C -0.172 4.172 8 O -0.568 6.568 9 C 0.560 3.440 10 O -0.589 6.589 11 C -0.120 4.120 12 C -0.193 4.193 13 C -0.093 4.093 14 C -0.211 4.211 15 C 0.081 3.919 16 C -0.507 4.507 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.843 5.843 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.252 1.252 24 C -0.128 4.128 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.024 0.976 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.389 0.611 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.283 0.717 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -6.670 -14.888 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.325 5.325 4 C -0.041 4.041 5 C 0.035 3.965 6 H 0.078 0.922 7 C -0.230 4.230 8 O -0.376 6.376 9 C 0.351 3.649 10 O -0.471 6.471 11 C -0.123 4.123 12 C -0.213 4.213 13 C -0.111 4.111 14 C -0.230 4.230 15 C 0.079 3.921 16 C -0.537 4.537 17 H 0.102 0.898 18 C -0.184 4.184 19 N -0.470 5.470 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.176 1.176 24 C -0.149 4.149 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.044 0.956 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.239 0.761 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.804 -5.793 -14.503 15.638 hybrid contribution -0.783 0.955 0.517 1.339 sum -1.587 -4.839 -13.986 14.884 Atomic orbital electron populations 1.22128 0.95468 1.02988 1.01481 1.22060 0.94691 0.80878 1.05317 1.47871 1.63929 1.15444 1.05234 1.22379 0.98524 0.97831 0.85324 1.22103 0.95404 0.82672 0.96354 0.92182 1.22338 1.03593 0.99820 0.97249 1.86611 1.61407 1.26588 1.62993 1.18947 0.75484 0.85567 0.84952 1.90671 1.49689 1.18976 1.87731 1.19644 1.02224 0.96962 0.93479 1.20651 1.05720 0.95482 0.99400 1.20906 0.98215 0.99439 0.92509 1.21466 1.02053 1.00133 0.99389 1.17862 0.90762 0.91726 0.91750 1.19798 1.28725 0.92712 1.12475 0.89775 1.26799 0.96782 0.96788 0.97985 1.69905 1.33803 1.04555 1.38745 0.85200 0.78515 0.77915 0.78066 1.18490 1.19914 1.17580 1.21046 1.01755 0.99700 0.92350 0.91098 0.89598 0.95649 0.87277 0.89609 0.91328 0.86314 0.91847 0.91460 0.89430 0.76080 0.85906 0.84425 0.87138 0.90628 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.23 71.98 0.74 -3.19 16 2 C 0.09 2.41 5.85 86.38 0.51 2.92 16 3 N -0.59 -19.50 2.44 -825.15 -2.02 -21.52 16 4 C 0.08 2.08 5.06 86.38 0.44 2.51 16 5 C 0.09 2.25 3.81 30.59 0.12 2.37 16 6 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 7 C -0.17 -2.91 9.53 71.98 0.69 -2.23 16 8 O -0.57 -11.80 12.41 -148.98 -1.85 -13.65 16 9 C 0.56 25.42 7.12 86.80 0.62 26.04 16 10 O -0.59 -31.31 16.70 -3.86 -0.06 -31.37 16 11 C -0.12 -5.80 4.90 -20.13 -0.10 -5.90 16 12 C -0.19 -8.07 7.49 22.70 0.17 -7.90 16 13 C -0.09 -3.78 10.01 22.18 0.22 -3.56 16 14 C -0.21 -9.94 9.78 22.77 0.22 -9.72 16 15 C 0.08 4.42 5.46 -21.32 -0.12 4.30 16 16 C -0.51 -27.77 9.02 23.47 0.21 -27.56 16 17 H 0.08 4.33 7.87 -2.91 -0.02 4.31 16 18 C 0.03 1.56 5.19 85.26 0.44 2.00 16 19 N -0.84 -48.45 11.33 21.83 0.25 -48.20 16 20 Si 0.98 40.11 29.58 68.60 2.03 42.14 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 24 C -0.13 -7.11 8.35 23.01 0.19 -6.92 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 2.08 7.31 -2.39 -0.02 2.06 16 29 H 0.09 2.61 4.34 -2.39 -0.01 2.60 16 30 H 0.07 2.05 7.47 -2.39 -0.02 2.03 16 31 H 0.12 1.97 8.05 -2.39 -0.02 1.95 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.39 4.12 9.04 -74.06 -0.67 3.45 16 36 H 0.12 4.46 7.53 -2.91 -0.02 4.43 16 37 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.28 15.08 8.30 -92.71 -0.77 14.31 16 40 H 0.08 4.92 6.73 -2.91 -0.02 4.90 16 Total: -1.00 -73.07 335.36 3.06 -70.01 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.37 Total: 29.41 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 4.35 Total: -26.82 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.77 Total: -69.72 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.91 Total: -45.02 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -73.07 3.06 -70.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341316935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.886 kcal (2) G-P(sol) polarization free energy of solvation -73.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds