Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.47166 * 2 1 4 4 C 1.34231 * 116.99825 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00214 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99736 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.46606 * 179.97438 * 6 4 3 8 8 C 1.46904 * 111.00285 * 293.94739 * 7 6 4 9 9 C 1.46906 * 110.99804 * 169.99962 * 7 6 4 10 10 C 1.50696 * 109.47133 * 189.99981 * 9 7 6 11 11 C 1.38641 * 119.74941 * 269.72440 * 10 9 7 12 12 C 1.37609 * 120.24758 * 179.72102 * 11 10 9 13 13 C 1.40714 * 119.74568 * 0.57658 * 12 11 10 14 14 C 1.41400 * 120.24712 * 179.67961 * 13 12 11 15 15 H 1.07994 * 120.00090 * 204.40498 * 14 13 12 16 16 C 1.39952 * 119.99631 * 24.40497 * 14 13 12 17 17 N 1.30819 * 120.00273 * 17.84643 * 16 14 13 18 18 Si 1.86792 * 119.99748 * 197.84555 * 16 14 13 19 19 H 1.48501 * 109.47222 * 59.99994 * 18 16 14 20 20 H 1.48503 * 109.47277 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47433 * 300.00000 * 18 16 14 22 22 C 1.40719 * 119.51241 * 359.69707 * 13 12 11 23 23 C 1.37614 * 119.74045 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47103 * 300.00526 * 1 2 3 25 25 H 1.09003 * 109.46696 * 60.00152 * 1 2 3 26 26 H 1.08999 * 109.46885 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47445 * 239.99516 * 2 1 3 28 28 H 1.09003 * 109.46696 * 119.99848 * 2 1 3 29 29 H 1.08997 * 109.47051 * 59.99796 * 6 4 3 30 30 H 1.08998 * 109.46880 * 299.99339 * 6 4 3 31 31 H 1.09008 * 109.46444 * 60.00558 * 8 7 6 32 32 H 1.08995 * 109.46990 * 180.02562 * 8 7 6 33 33 H 1.08992 * 109.47128 * 300.00822 * 8 7 6 34 34 H 1.08999 * 109.46838 * 310.00184 * 9 7 6 35 35 H 1.09004 * 109.46930 * 69.99707 * 9 7 6 36 36 H 1.08002 * 119.87071 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.12907 * 180.27386 * 12 11 10 38 38 H 0.96991 * 120.00408 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.12971 * 179.97438 * 22 13 12 40 40 H 1.08002 * 119.87422 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 7 5.3878 2.8604 0.0023 8 6 5.8834 2.2768 1.2560 9 6 5.9844 4.1817 -0.2353 10 6 7.4649 4.0291 -0.4715 11 6 8.3422 4.0867 0.6006 12 6 9.6956 3.9430 0.3973 13 6 10.1891 3.7490 -0.9061 14 6 11.5783 3.6069 -1.1278 15 1 11.9987 3.8491 -2.0927 16 6 12.4085 3.1522 -0.0969 17 7 11.8924 2.5353 0.9347 18 14 14.2537 3.4264 -0.1941 19 1 14.5347 4.8828 -0.2652 20 1 14.9032 2.8558 1.0133 21 1 14.7901 2.7590 -1.4074 22 6 9.2899 3.6979 -1.9873 23 6 7.9400 3.8384 -1.7598 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5845 3.4693 0.8911 30 1 3.5853 3.4697 -0.8888 31 1 5.4806 1.2706 1.3725 32 1 6.9721 2.2319 1.2304 33 1 5.5652 2.8950 2.0953 34 1 5.5218 4.6371 -1.1108 35 1 5.8188 4.8169 0.6350 36 1 7.9615 4.2410 1.5995 37 1 10.3768 3.9838 1.2344 38 1 12.4677 2.2205 1.6494 39 1 9.6579 3.5499 -2.9918 40 1 7.2479 3.7991 -2.5880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342713410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -64.427163 kcal Electronic energy + Delta-G solvation = -20828.903934 eV Core-core repulsion = 17608.491821 eV Total energy + Delta-G solvation = -3220.412113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46144 -38.14536 -36.94402 -35.85154 -33.62880 -31.99090 -30.56619 -29.29114 -28.28288 -27.15311 -24.83052 -23.40922 -22.09704 -20.90471 -20.61897 -19.72667 -17.66148 -17.26732 -16.77321 -16.29177 -15.33935 -15.15285 -14.94073 -14.38984 -14.12585 -13.89655 -13.40582 -13.33276 -12.99873 -12.66739 -12.42112 -12.31932 -11.93258 -11.76732 -11.72117 -11.50884 -11.34684 -11.24846 -11.02824 -10.91665 -10.63278 -10.60124 -10.30292 -10.14135 -9.55569 -9.35049 -9.10550 -8.03452 -7.39842 -7.26533 -6.73750 -4.32287 2.30144 2.49547 2.81041 3.07466 3.10110 3.12382 3.22040 3.94551 4.29153 4.66821 4.71216 4.72634 4.82346 5.06373 5.17378 5.27335 5.46896 5.53391 5.61315 5.71254 5.73199 5.76688 5.91747 6.11528 6.22712 6.37013 6.39304 6.44572 6.63077 6.97371 7.09875 7.22622 7.32492 7.38427 7.41970 7.64995 7.88365 7.91870 8.08170 8.16511 8.33544 8.66739 8.92354 9.00921 10.20487 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038152 B = 0.003112 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.726116 B = 8995.008844 C = 9209.819221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.366 6.366 4 C 0.459 3.541 5 O -0.484 6.484 6 C 0.062 3.938 7 N -0.523 5.523 8 C 0.018 3.982 9 C 0.123 3.877 10 C -0.210 4.210 11 C -0.092 4.092 12 C -0.167 4.167 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.908 3.092 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.229 4.229 23 C -0.067 4.067 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.014 0.986 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.091 0.909 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.439 -0.595 1.271 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.300 3.700 5 O -0.369 6.369 6 C -0.067 4.067 7 N -0.248 5.248 8 C -0.130 4.130 9 C -0.003 4.003 10 C -0.212 4.212 11 C -0.111 4.111 12 C -0.187 4.187 13 C 0.111 3.889 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.417 5.417 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.248 4.248 23 C -0.085 4.085 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.033 0.967 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.034 -1.361 1.114 16.130 hybrid contribution 0.630 0.253 0.693 0.970 sum -15.404 -1.109 1.807 15.549 Atomic orbital electron populations 1.21798 0.92795 1.02836 1.03411 1.22971 0.95130 0.80504 1.02617 1.86484 1.25040 1.32222 1.84648 1.23795 0.80166 0.93121 0.72921 1.90666 1.59928 1.42866 1.43435 1.21613 0.91017 0.90055 1.04022 1.61862 1.01458 1.25112 1.36359 1.22594 1.03394 0.99273 0.87734 1.20790 0.93777 0.86704 0.98993 1.18755 0.91667 1.16966 0.93832 1.20510 0.94046 1.00865 0.95675 1.21269 0.93616 1.05758 0.98011 1.17622 0.92875 0.87159 0.91266 1.19576 0.92173 1.39134 0.98346 0.90513 1.25912 1.01400 0.92421 0.94469 1.69820 1.38137 1.25747 1.07980 0.86381 0.82012 0.79833 0.78565 1.18852 1.20378 1.19015 1.20961 0.92760 1.13177 0.97941 1.20316 0.94726 0.98713 0.94780 0.91589 0.91502 0.90363 0.91234 0.91391 0.91239 0.86974 0.90861 0.89351 0.96724 0.91459 0.95390 0.89871 0.86551 0.90850 0.89115 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.62 6.19 37.16 0.23 0.84 16 3 O -0.37 -4.48 10.22 -39.26 -0.40 -4.88 16 4 C 0.46 6.62 7.68 36.01 0.28 6.90 16 5 O -0.48 -8.65 14.06 -18.74 -0.26 -8.91 16 6 C 0.06 0.82 5.56 -4.97 -0.03 0.79 16 7 N -0.52 -8.94 4.49 -245.82 -1.10 -10.04 16 8 C 0.02 0.31 8.87 60.07 0.53 0.84 16 9 C 0.12 2.12 5.11 -4.97 -0.03 2.09 16 10 C -0.21 -4.54 4.91 -104.33 -0.51 -5.05 16 11 C -0.09 -2.12 7.87 -39.66 -0.31 -2.43 16 12 C -0.17 -4.35 8.70 -38.88 -0.34 -4.68 16 13 C 0.11 3.05 5.58 -106.82 -0.60 2.46 16 14 C -0.46 -12.42 9.05 -37.74 -0.34 -12.76 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.69 10.95 55.55 0.61 -20.09 16 18 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 23 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.11 1.24 7.93 -51.93 -0.41 0.82 16 31 H 0.07 1.31 5.89 -51.92 -0.31 1.01 16 32 H 0.09 1.80 5.90 -51.93 -0.31 1.49 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 35 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 36 H 0.08 1.74 7.99 -52.49 -0.42 1.32 16 37 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 334.11 15.07 5.04 5.04 Total: -1.00 -29.70 334.11 -8.69 -38.39 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.95 Total: 4.51 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -1.58 Total: -17.81 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: -0.50 Total: -30.13 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.66 Total: -13.79 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.70 -8.69 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342713410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.042 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds