Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.47166 * 2 1 4 4 C 1.34231 * 116.99825 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00214 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99736 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.46606 * 179.97438 * 6 4 3 8 8 C 1.46904 * 111.00285 * 293.94739 * 7 6 4 9 9 C 1.46906 * 110.99804 * 169.99962 * 7 6 4 10 10 C 1.50696 * 109.47133 * 189.99981 * 9 7 6 11 11 C 1.38641 * 119.74941 * 269.72440 * 10 9 7 12 12 C 1.37609 * 120.24758 * 179.72102 * 11 10 9 13 13 C 1.40714 * 119.74568 * 0.57658 * 12 11 10 14 14 C 1.41400 * 120.24712 * 179.67961 * 13 12 11 15 15 H 1.07994 * 120.00090 * 204.40498 * 14 13 12 16 16 C 1.39952 * 119.99631 * 24.40497 * 14 13 12 17 17 N 1.30819 * 120.00273 * 17.84643 * 16 14 13 18 18 Si 1.86792 * 119.99748 * 197.84555 * 16 14 13 19 19 H 1.48501 * 109.47222 * 59.99994 * 18 16 14 20 20 H 1.48503 * 109.47277 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47433 * 300.00000 * 18 16 14 22 22 C 1.40719 * 119.51241 * 359.69707 * 13 12 11 23 23 C 1.37614 * 119.74045 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47103 * 300.00526 * 1 2 3 25 25 H 1.09003 * 109.46696 * 60.00152 * 1 2 3 26 26 H 1.08999 * 109.46885 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47445 * 239.99516 * 2 1 3 28 28 H 1.09003 * 109.46696 * 119.99848 * 2 1 3 29 29 H 1.08997 * 109.47051 * 59.99796 * 6 4 3 30 30 H 1.08998 * 109.46880 * 299.99339 * 6 4 3 31 31 H 1.09008 * 109.46444 * 60.00558 * 8 7 6 32 32 H 1.08995 * 109.46990 * 180.02562 * 8 7 6 33 33 H 1.08992 * 109.47128 * 300.00822 * 8 7 6 34 34 H 1.08999 * 109.46838 * 310.00184 * 9 7 6 35 35 H 1.09004 * 109.46930 * 69.99707 * 9 7 6 36 36 H 1.08002 * 119.87071 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.12907 * 180.27386 * 12 11 10 38 38 H 0.96991 * 120.00408 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.12971 * 179.97438 * 22 13 12 40 40 H 1.08002 * 119.87422 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 7 5.3878 2.8604 0.0023 8 6 5.8834 2.2768 1.2560 9 6 5.9844 4.1817 -0.2353 10 6 7.4649 4.0291 -0.4715 11 6 8.3422 4.0867 0.6006 12 6 9.6956 3.9430 0.3973 13 6 10.1891 3.7490 -0.9061 14 6 11.5783 3.6069 -1.1278 15 1 11.9987 3.8491 -2.0927 16 6 12.4085 3.1522 -0.0969 17 7 11.8924 2.5353 0.9347 18 14 14.2537 3.4264 -0.1941 19 1 14.5347 4.8828 -0.2652 20 1 14.9032 2.8558 1.0133 21 1 14.7901 2.7590 -1.4074 22 6 9.2899 3.6979 -1.9873 23 6 7.9400 3.8384 -1.7598 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5845 3.4693 0.8911 30 1 3.5853 3.4697 -0.8888 31 1 5.4806 1.2706 1.3725 32 1 6.9721 2.2319 1.2304 33 1 5.5652 2.8950 2.0953 34 1 5.5218 4.6371 -1.1108 35 1 5.8188 4.8169 0.6350 36 1 7.9615 4.2410 1.5995 37 1 10.3768 3.9838 1.2344 38 1 12.4677 2.2205 1.6494 39 1 9.6579 3.5499 -2.9918 40 1 7.2479 3.7991 -2.5880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342713410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -81.271778 kcal Electronic energy + Delta-G solvation = -20829.634371 eV Core-core repulsion = 17608.491821 eV Total energy + Delta-G solvation = -3221.142550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54839 -39.76759 -38.25827 -37.16587 -35.46150 -32.78979 -32.21556 -31.16317 -29.54813 -28.73104 -26.43632 -24.44962 -23.36677 -22.73637 -21.80926 -21.38098 -19.19804 -18.75015 -17.76992 -17.42190 -17.13162 -16.31366 -16.24538 -15.96411 -15.60280 -15.29184 -14.89539 -14.72253 -14.20430 -13.80653 -13.78963 -13.59728 -13.41519 -13.19146 -12.93989 -12.82181 -12.66928 -12.60838 -12.51531 -12.47722 -12.32469 -11.99379 -11.51476 -11.48781 -11.28558 -11.16847 -10.98937 -9.39051 -9.24542 -9.11369 -8.61933 -6.31459 0.94896 1.19773 1.21718 1.37010 1.47146 1.50287 1.66224 2.20958 2.69184 3.17076 3.75447 3.83288 4.00576 4.10162 4.12957 4.28679 4.32263 4.36028 4.40319 4.50782 4.57223 4.69302 4.72282 4.83060 4.87270 4.93753 5.07405 5.10681 5.17652 5.19072 5.40476 5.49108 5.51172 5.73875 5.94089 6.00918 6.11693 6.15593 6.31226 6.43227 6.73538 6.82885 6.96735 7.07538 8.34480 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038152 B = 0.003112 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.726116 B = 8995.008844 C = 9209.819221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.461 3.539 5 O -0.528 6.528 6 C 0.064 3.936 7 N -0.545 5.545 8 C 0.026 3.974 9 C 0.128 3.872 10 C -0.197 4.197 11 C -0.092 4.092 12 C -0.193 4.193 13 C 0.079 3.921 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.827 5.827 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.248 4.248 23 C -0.072 4.072 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.142 0.858 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.287 0.713 39 H 0.092 0.908 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.709 0.226 1.296 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.304 3.696 5 O -0.416 6.416 6 C -0.064 4.064 7 N -0.271 5.271 8 C -0.122 4.122 9 C 0.002 3.998 10 C -0.198 4.198 11 C -0.111 4.111 12 C -0.213 4.213 13 C 0.076 3.924 14 C -0.534 4.534 15 H 0.091 0.909 16 C -0.181 4.181 17 N -0.453 5.453 18 Si 0.803 3.197 19 H -0.184 1.184 20 H -0.192 1.192 21 H -0.185 1.185 22 C -0.267 4.267 23 C -0.091 4.091 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.159 0.841 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.349 -0.530 1.134 18.391 hybrid contribution 1.081 -0.036 0.679 1.277 sum -17.268 -0.566 1.812 17.372 Atomic orbital electron populations 1.21810 0.90079 1.04314 1.03857 1.23249 0.97216 0.79404 1.02195 1.86484 1.23777 1.33517 1.83993 1.24108 0.80546 0.93234 0.71668 1.90663 1.60978 1.44293 1.45662 1.21740 0.88205 0.89697 1.06782 1.61621 1.04235 1.24949 1.36259 1.22411 1.01055 0.99590 0.89143 1.20756 0.90541 0.87282 1.01185 1.19272 0.94453 1.13355 0.92751 1.20758 0.93133 0.99864 0.97306 1.21250 0.94893 1.07797 0.97311 1.17971 0.93690 0.88423 0.92270 1.19818 0.93047 1.41378 0.99134 0.90871 1.26769 1.06188 0.91435 0.93692 1.69883 1.40023 1.26565 1.08812 0.85258 0.75724 0.79805 0.78934 1.18377 1.19183 1.18470 1.21171 0.93963 1.13917 0.97688 1.20667 0.94172 0.97860 0.96359 0.91066 0.91065 0.88397 0.91854 0.91785 0.88237 0.84078 0.91729 0.92845 0.94460 0.88686 0.93415 0.87878 0.88417 0.90250 0.88961 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.36 -7.96 10.22 -51.43 -0.53 -8.49 16 4 C 0.46 12.30 7.68 71.24 0.55 12.84 16 5 O -0.53 -18.48 14.06 21.99 0.31 -18.17 16 6 C 0.06 1.43 5.56 85.56 0.48 1.90 16 7 N -0.55 -17.06 4.49 -931.63 -4.18 -21.24 16 8 C 0.03 0.88 8.87 127.69 1.13 2.01 16 9 C 0.13 3.92 5.11 85.55 0.44 4.36 16 10 C -0.20 -8.18 4.91 -19.68 -0.10 -8.27 16 11 C -0.09 -4.22 7.87 22.22 0.17 -4.05 16 12 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 13 C 0.08 4.42 5.58 -21.29 -0.12 4.30 16 14 C -0.50 -28.31 9.05 23.46 0.21 -28.10 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 16 C 0.03 1.76 5.14 85.26 0.44 2.20 16 17 N -0.83 -44.93 10.95 21.83 0.24 -44.69 16 18 Si 0.98 39.50 29.59 68.60 2.03 41.53 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 C -0.25 -12.66 9.80 22.73 0.22 -12.44 16 23 C -0.07 -3.20 9.67 22.22 0.21 -2.98 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 28 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.10 1.72 8.12 -2.39 -0.02 1.70 16 30 H 0.14 2.38 7.93 -2.39 -0.02 2.36 16 31 H 0.06 2.28 5.89 -2.38 -0.01 2.27 16 32 H 0.05 2.16 5.90 -2.39 -0.01 2.14 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 2.44 7.87 -2.39 -0.02 2.42 16 35 H 0.05 1.31 8.06 -2.38 -0.02 1.29 16 36 H 0.10 4.23 7.99 -2.91 -0.02 4.21 16 37 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 38 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 39 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -67.51 334.11 3.91 -63.60 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 1.02 Total: 25.34 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 5.02 Total: -37.88 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -3.95 Total: -65.94 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.22 Total: -26.66 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -67.51 3.91 -63.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342713410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.676 kcal (2) G-P(sol) polarization free energy of solvation -67.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds