Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47207 * 2 1 4 4 C 1.37105 * 119.99793 * 263.83423 * 3 2 1 5 5 H 1.08002 * 119.99460 * 196.84923 * 4 3 2 6 6 C 1.38941 * 120.00039 * 16.85097 * 4 3 2 7 7 N 1.31408 * 120.00453 * 28.38373 * 6 4 3 8 8 Si 1.86806 * 119.99899 * 208.38367 * 6 4 3 9 9 H 1.48500 * 109.46929 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47146 * 120.00022 * 8 6 4 11 11 H 1.48498 * 109.46841 * 240.00155 * 8 6 4 12 12 C 1.34778 * 120.00142 * 83.83635 * 3 2 1 13 13 O 1.21287 * 119.99428 * 4.62970 * 12 3 2 14 14 C 1.50696 * 120.00078 * 184.63680 * 12 3 2 15 15 C 1.53004 * 109.46697 * 278.18150 * 14 12 3 16 16 O 1.42896 * 109.47446 * 38.17836 * 14 12 3 17 17 C 1.52998 * 109.47173 * 158.18300 * 14 12 3 18 18 C 1.50699 * 109.47184 * 179.97438 * 17 14 12 19 19 C 1.38234 * 119.99969 * 269.72882 * 18 17 14 20 20 C 1.38240 * 119.99689 * 179.76888 * 19 18 17 21 21 C 1.38237 * 119.99746 * 0.50017 * 20 19 18 22 22 C 1.38237 * 120.00330 * 359.75187 * 21 20 19 23 23 C 1.38230 * 119.99862 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47272 * 173.27552 * 1 2 3 25 25 H 1.09001 * 109.46658 * 293.27706 * 1 2 3 26 26 H 1.09000 * 109.47337 * 53.27348 * 1 2 3 27 27 H 1.09009 * 109.46899 * 240.00624 * 2 1 3 28 28 H 1.08997 * 109.47815 * 120.00575 * 2 1 3 29 29 H 0.97005 * 120.00150 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47211 * 55.64667 * 15 14 12 31 31 H 1.09002 * 109.47089 * 175.64357 * 15 14 12 32 32 H 1.08997 * 109.47116 * 295.64179 * 15 14 12 33 33 H 0.96701 * 114.00050 * 60.00164 * 16 14 12 34 34 H 1.08992 * 109.47181 * 299.99936 * 17 14 12 35 35 H 1.09002 * 109.46891 * 59.99510 * 17 14 12 36 36 H 1.07994 * 120.00061 * 359.97438 * 19 18 17 37 37 H 1.07996 * 120.00110 * 180.22806 * 20 19 18 38 38 H 1.08008 * 119.99808 * 179.72809 * 21 20 19 39 39 H 1.07997 * 119.99902 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00102 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3671 1.9850 -1.1805 5 1 2.9717 2.8799 -1.1713 6 6 1.9427 1.4456 -2.3886 7 7 0.8234 0.7595 -2.4448 8 14 2.9633 1.6958 -3.9330 9 1 4.1688 2.4985 -3.6050 10 1 3.3784 0.3755 -4.4713 11 1 2.1536 2.4129 -4.9506 12 6 2.1248 2.0584 1.1605 13 8 1.8969 1.4988 2.2121 14 6 2.5268 3.5107 1.1512 15 6 4.0490 3.6177 1.0387 16 8 1.9195 4.1660 0.0360 17 6 2.0632 4.1764 2.4484 18 6 2.4658 5.6286 2.4395 19 6 3.6888 6.0101 2.9588 20 6 4.0600 7.3416 2.9463 21 6 3.2039 8.2929 2.4237 22 6 1.9787 7.9121 1.9091 23 6 1.6094 6.5801 1.9175 24 1 -0.3633 -1.0205 -0.1203 25 1 -0.3633 0.4061 0.9441 26 1 -0.3634 0.6145 -0.8237 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5273 0.3826 -3.2882 30 1 4.3869 3.0769 0.1547 31 1 4.3342 4.6664 0.9541 32 1 4.5102 3.1863 1.9271 33 1 0.9530 4.1376 0.0417 34 1 0.9790 4.1001 2.5286 35 1 2.5265 3.6765 3.2991 36 1 4.3555 5.2674 3.3713 37 1 5.0170 7.6392 3.3486 38 1 3.4921 9.3338 2.4179 39 1 1.3097 8.6554 1.5013 40 1 0.6521 6.2826 1.5159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344184616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = -49.691122 kcal Electronic energy + Delta-G solvation = -22536.608049 eV Core-core repulsion = 19316.834939 eV Total energy + Delta-G solvation = -3219.773110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.73174 -38.59576 -36.09680 -35.02672 -32.55525 -31.49312 -30.77328 -30.22963 -29.18816 -26.44784 -24.83213 -23.28327 -22.30641 -21.62469 -20.26079 -18.97873 -17.64895 -16.67221 -16.22459 -15.09345 -14.86874 -14.70586 -14.54997 -14.28962 -14.12845 -13.52306 -13.25742 -12.86747 -12.70579 -12.38406 -12.32616 -12.02422 -11.80181 -11.45560 -11.37652 -11.13192 -11.09076 -10.93524 -10.74593 -10.67272 -10.66155 -10.47987 -10.31423 -9.64053 -9.46220 -8.96111 -8.69732 -8.47871 -8.01352 -7.71087 -6.32474 -3.78104 1.57679 1.61439 3.12318 3.26698 3.31643 3.79612 3.98504 4.14786 4.62663 4.94989 5.05788 5.07379 5.13461 5.20428 5.33246 5.50371 5.59894 5.72247 5.78987 5.99663 6.09682 6.16756 6.26371 6.37463 6.38693 6.50379 6.55011 6.66402 6.68816 6.69719 6.74365 6.80952 6.95007 6.98120 7.22194 7.26835 7.49131 7.77304 7.96347 8.33346 8.54420 9.14339 9.53714 9.93444 10.63976 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.005864 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.194940 B = 4773.643319 C = 5434.153244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 N -0.422 5.422 4 C -0.325 4.325 5 H 0.121 0.879 6 C 0.037 3.963 7 N -0.854 5.854 8 Si 0.907 3.093 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.420 3.580 13 O -0.613 6.613 14 C 0.146 3.854 15 C -0.137 4.137 16 O -0.529 6.529 17 C -0.093 4.093 18 C -0.058 4.058 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.104 4.104 24 H 0.031 0.969 25 H 0.023 0.977 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.370 0.630 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 9.411 5.221 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.013 3.987 3 N -0.138 5.138 4 C -0.452 4.452 5 H 0.139 0.861 6 C -0.167 4.167 7 N -0.492 5.492 8 Si 0.734 3.266 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.208 3.792 13 O -0.502 6.502 14 C 0.102 3.898 15 C -0.194 4.194 16 O -0.333 6.333 17 C -0.131 4.131 18 C -0.058 4.058 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.122 4.122 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.217 0.783 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.186 9.110 5.383 11.051 hybrid contribution -0.217 -0.116 -0.862 0.896 sum 2.969 8.994 4.522 10.495 Atomic orbital electron populations 1.22199 0.96400 1.00680 1.01834 1.20996 0.94814 0.83461 0.99401 1.43904 1.53606 1.10530 1.05758 1.20141 1.30973 1.12237 0.81858 0.86146 1.25215 0.95074 0.97269 0.99170 1.70088 1.17117 1.35271 1.26705 0.86188 0.80690 0.77954 0.81767 1.19278 1.20889 1.21044 1.20727 0.85145 0.89079 0.84275 1.90519 1.57990 1.70258 1.31393 1.20853 0.94622 0.88991 0.85330 1.21797 0.92459 1.02428 1.02710 1.86607 1.23915 1.77856 1.44915 1.21091 1.01921 0.90874 0.99218 1.19839 0.94129 0.95328 0.96536 1.21070 0.96268 0.95920 1.00266 1.21057 0.99397 0.93260 1.00453 1.21037 0.94804 0.99055 1.00232 1.21080 0.96725 0.96076 1.00042 1.21021 0.99766 0.92619 0.98826 0.94964 0.95811 0.87557 0.90813 0.94166 0.92440 0.90848 0.91779 0.91952 0.78302 0.90919 0.89584 0.86280 0.86577 0.86740 0.86544 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.60 37.16 0.36 -3.18 16 2 C 0.14 3.30 5.28 -4.04 -0.02 3.28 16 3 N -0.42 -10.33 2.64 -114.81 -0.30 -10.63 16 4 C -0.32 -7.98 7.64 -14.93 -0.11 -8.09 16 5 H 0.12 2.95 4.63 -52.49 -0.24 2.71 16 6 C 0.04 0.91 4.67 -17.47 -0.08 0.83 16 7 N -0.85 -21.28 8.88 55.49 0.49 -20.79 16 8 Si 0.91 19.51 29.64 -169.99 -5.04 14.47 16 9 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.42 9.86 6.53 -10.99 -0.07 9.79 16 13 O -0.61 -15.81 15.71 5.55 0.09 -15.72 16 14 C 0.15 2.83 0.64 -91.77 -0.06 2.78 16 15 C -0.14 -2.47 7.82 37.16 0.29 -2.18 16 16 O -0.53 -10.33 9.24 -35.23 -0.33 -10.65 16 17 C -0.09 -1.59 4.11 -27.88 -0.11 -1.70 16 18 C -0.06 -0.88 4.33 -104.62 -0.45 -1.34 16 19 C -0.12 -1.62 8.01 -39.58 -0.32 -1.94 16 20 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 21 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 22 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 23 C -0.10 -1.48 9.28 -39.58 -0.37 -1.85 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.11 2.65 5.74 -51.93 -0.30 2.35 16 27 H 0.07 1.83 6.59 -51.92 -0.34 1.49 16 28 H 0.04 0.97 7.55 -51.93 -0.39 0.58 16 29 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 30 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 31 H 0.06 1.07 6.50 -51.93 -0.34 0.74 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.37 6.73 9.04 45.56 0.41 7.14 16 34 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 35 H 0.09 1.51 7.83 -51.93 -0.41 1.11 16 36 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -28.04 321.05 -7.28 -35.32 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -4.89 Total: 12.63 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.14 Total: -9.46 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.19 Total: -31.42 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.24 Total: -26.37 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.04 Total: 14.47 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.04 -7.28 -35.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.374 kcal (2) G-P(sol) polarization free energy of solvation -28.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds