Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47207 * 2 1 4 4 C 1.37105 * 119.99793 * 263.83423 * 3 2 1 5 5 H 1.08002 * 119.99460 * 196.84923 * 4 3 2 6 6 C 1.38941 * 120.00039 * 16.85097 * 4 3 2 7 7 N 1.31408 * 120.00453 * 28.38373 * 6 4 3 8 8 Si 1.86806 * 119.99899 * 208.38367 * 6 4 3 9 9 H 1.48500 * 109.46929 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47146 * 120.00022 * 8 6 4 11 11 H 1.48498 * 109.46841 * 240.00155 * 8 6 4 12 12 C 1.34778 * 120.00142 * 83.83635 * 3 2 1 13 13 O 1.21287 * 119.99428 * 4.62970 * 12 3 2 14 14 C 1.50696 * 120.00078 * 184.63680 * 12 3 2 15 15 C 1.53004 * 109.46697 * 278.18150 * 14 12 3 16 16 O 1.42896 * 109.47446 * 38.17836 * 14 12 3 17 17 C 1.52998 * 109.47173 * 158.18300 * 14 12 3 18 18 C 1.50699 * 109.47184 * 179.97438 * 17 14 12 19 19 C 1.38234 * 119.99969 * 269.72882 * 18 17 14 20 20 C 1.38240 * 119.99689 * 179.76888 * 19 18 17 21 21 C 1.38237 * 119.99746 * 0.50017 * 20 19 18 22 22 C 1.38237 * 120.00330 * 359.75187 * 21 20 19 23 23 C 1.38230 * 119.99862 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47272 * 173.27552 * 1 2 3 25 25 H 1.09001 * 109.46658 * 293.27706 * 1 2 3 26 26 H 1.09000 * 109.47337 * 53.27348 * 1 2 3 27 27 H 1.09009 * 109.46899 * 240.00624 * 2 1 3 28 28 H 1.08997 * 109.47815 * 120.00575 * 2 1 3 29 29 H 0.97005 * 120.00150 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47211 * 55.64667 * 15 14 12 31 31 H 1.09002 * 109.47089 * 175.64357 * 15 14 12 32 32 H 1.08997 * 109.47116 * 295.64179 * 15 14 12 33 33 H 0.96701 * 114.00050 * 60.00164 * 16 14 12 34 34 H 1.08992 * 109.47181 * 299.99936 * 17 14 12 35 35 H 1.09002 * 109.46891 * 59.99510 * 17 14 12 36 36 H 1.07994 * 120.00061 * 359.97438 * 19 18 17 37 37 H 1.07996 * 120.00110 * 180.22806 * 20 19 18 38 38 H 1.08008 * 119.99808 * 179.72809 * 21 20 19 39 39 H 1.07997 * 119.99902 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00102 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3671 1.9850 -1.1805 5 1 2.9717 2.8799 -1.1713 6 6 1.9427 1.4456 -2.3886 7 7 0.8234 0.7595 -2.4448 8 14 2.9633 1.6958 -3.9330 9 1 4.1688 2.4985 -3.6050 10 1 3.3784 0.3755 -4.4713 11 1 2.1536 2.4129 -4.9506 12 6 2.1248 2.0584 1.1605 13 8 1.8969 1.4988 2.2121 14 6 2.5268 3.5107 1.1512 15 6 4.0490 3.6177 1.0387 16 8 1.9195 4.1660 0.0360 17 6 2.0632 4.1764 2.4484 18 6 2.4658 5.6286 2.4395 19 6 3.6888 6.0101 2.9588 20 6 4.0600 7.3416 2.9463 21 6 3.2039 8.2929 2.4237 22 6 1.9787 7.9121 1.9091 23 6 1.6094 6.5801 1.9175 24 1 -0.3633 -1.0205 -0.1203 25 1 -0.3633 0.4061 0.9441 26 1 -0.3634 0.6145 -0.8237 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5273 0.3826 -3.2882 30 1 4.3869 3.0769 0.1547 31 1 4.3342 4.6664 0.9541 32 1 4.5102 3.1863 1.9271 33 1 0.9530 4.1376 0.0417 34 1 0.9790 4.1001 2.5286 35 1 2.5265 3.6765 3.2991 36 1 4.3555 5.2674 3.3713 37 1 5.0170 7.6392 3.3486 38 1 3.4921 9.3338 2.4179 39 1 1.3097 8.6554 1.5013 40 1 0.6521 6.2826 1.5159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344184616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = -65.325493 kcal Electronic energy + Delta-G solvation = -22537.286006 eV Core-core repulsion = 19316.834939 eV Total energy + Delta-G solvation = -3220.451068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27207 -39.91058 -37.68172 -36.93625 -33.88434 -33.38663 -32.01810 -31.65342 -30.74147 -27.76041 -26.71482 -25.00243 -23.33677 -23.07239 -21.66193 -20.75719 -19.36476 -18.30211 -17.36734 -16.54237 -16.44091 -16.31765 -15.99016 -15.82747 -15.63818 -15.25107 -14.58469 -14.36198 -14.17692 -13.87813 -13.66166 -13.51266 -13.26676 -13.06936 -12.96290 -12.84650 -12.71043 -12.56867 -12.42097 -12.25773 -12.06628 -11.81567 -11.73379 -11.51914 -11.17477 -10.86455 -9.95086 -9.69215 -9.64392 -9.41911 -8.20241 -5.70986 0.54888 0.61904 1.39754 1.51673 1.62108 1.97032 2.34740 2.82840 3.05112 3.16083 3.49289 3.87212 3.98114 4.12607 4.24593 4.26087 4.28958 4.39302 4.54507 4.62846 4.74401 4.77012 4.85718 4.89062 4.93407 4.94224 5.02386 5.09902 5.21897 5.26734 5.31207 5.32030 5.59029 5.67522 5.71544 5.85356 5.87938 6.02299 6.23316 6.60761 6.80832 7.24396 7.65089 8.04631 8.76425 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.005864 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.194940 B = 4773.643319 C = 5434.153244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.136 3.864 3 N -0.431 5.431 4 C -0.335 4.335 5 H 0.121 0.879 6 C 0.003 3.997 7 N -0.872 5.872 8 Si 0.968 3.032 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.410 3.590 13 O -0.641 6.641 14 C 0.153 3.847 15 C -0.129 4.129 16 O -0.532 6.532 17 C -0.080 4.080 18 C -0.077 4.077 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.119 4.119 24 H 0.051 0.949 25 H 0.014 0.986 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.267 0.733 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.373 0.627 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 11.309 4.912 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.013 3.987 3 N -0.148 5.148 4 C -0.462 4.462 5 H 0.138 0.862 6 C -0.200 4.200 7 N -0.510 5.510 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.199 3.801 13 O -0.532 6.532 14 C 0.109 3.891 15 C -0.187 4.187 16 O -0.337 6.337 17 C -0.119 4.119 18 C -0.077 4.077 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.221 0.779 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.180 11.014 5.070 12.825 hybrid contribution -0.553 -0.686 -0.731 1.145 sum 3.627 10.328 4.339 11.775 Atomic orbital electron populations 1.22026 0.95583 1.01482 1.00518 1.20960 0.95444 0.83763 0.98555 1.44091 1.53759 1.10631 1.06275 1.20246 1.31288 1.12625 0.82039 0.86154 1.25873 0.95624 0.97195 1.01328 1.70160 1.17730 1.35756 1.27384 0.85266 0.79204 0.77642 0.78553 1.19086 1.20870 1.21028 1.21536 0.84344 0.90714 0.83508 1.90486 1.59065 1.71364 1.32247 1.20814 0.95430 0.86379 0.86495 1.21748 0.91331 1.03229 1.02351 1.86583 1.24310 1.77504 1.45255 1.20894 1.01173 0.92412 0.97390 1.19696 0.95361 0.93982 0.98634 1.21230 0.95881 0.97106 1.00366 1.21396 1.00533 0.92529 0.99825 1.21446 0.94165 1.00536 0.98746 1.21382 0.97543 0.95741 0.99763 1.21155 0.99862 0.93454 0.99244 0.93039 0.96725 0.89079 0.91654 0.94764 0.92258 0.92518 0.90196 0.90986 0.77919 0.91835 0.90484 0.85725 0.83957 0.83846 0.84417 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.42 9.60 71.98 0.69 -5.73 16 2 C 0.14 6.69 5.28 86.38 0.46 7.14 16 3 N -0.43 -21.42 2.64 -635.54 -1.67 -23.09 16 4 C -0.33 -16.46 7.64 84.04 0.64 -15.82 16 5 H 0.12 5.87 4.63 -2.91 -0.01 5.86 16 6 C 0.00 0.14 4.67 84.92 0.40 0.53 16 7 N -0.87 -43.36 8.88 21.66 0.19 -43.16 16 8 Si 0.97 39.59 29.64 68.60 2.03 41.62 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 10 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 C 0.41 19.55 6.53 87.66 0.57 20.12 16 13 O -0.64 -33.75 15.71 -3.05 -0.05 -33.80 16 14 C 0.15 5.94 0.64 -11.54 -0.01 5.93 16 15 C -0.13 -4.59 7.82 71.98 0.56 -4.03 16 16 O -0.53 -20.73 9.24 -148.98 -1.38 -22.11 16 17 C -0.08 -2.77 4.11 29.85 0.12 -2.65 16 18 C -0.08 -2.26 4.33 -19.86 -0.09 -2.34 16 19 C -0.13 -3.31 8.01 22.27 0.18 -3.14 16 20 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 21 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 22 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 23 C -0.12 -3.24 9.28 22.27 0.21 -3.04 16 24 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 4.57 5.74 -2.39 -0.01 4.56 16 27 H 0.07 3.28 6.59 -2.38 -0.02 3.27 16 28 H 0.03 1.69 7.55 -2.39 -0.02 1.67 16 29 H 0.27 12.67 8.31 -92.70 -0.77 11.90 16 30 H 0.06 2.19 6.62 -2.39 -0.02 2.17 16 31 H 0.08 2.57 6.50 -2.39 -0.02 2.56 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.37 13.76 9.04 -74.06 -0.67 13.09 16 34 H 0.06 2.24 8.09 -2.39 -0.02 2.22 16 35 H 0.08 2.74 7.83 -2.39 -0.02 2.73 16 36 H 0.12 3.00 8.04 -2.91 -0.02 2.97 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -58.82 321.05 3.91 -54.91 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.38 Total: 36.27 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.41 Total: -10.64 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -1.48 Total: -66.26 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -1.42 Total: -55.90 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -58.82 3.91 -54.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.418 kcal (2) G-P(sol) polarization free energy of solvation -58.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds