Wall clock time and date at job start Mon Mar 30 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47422 * 2 1 4 4 C 1.37101 * 120.00061 * 274.34141 * 3 2 1 5 5 H 1.07995 * 120.00116 * 173.68596 * 4 3 2 6 6 C 1.38953 * 119.99671 * 353.68504 * 4 3 2 7 7 N 1.31413 * 119.99959 * 33.72795 * 6 4 3 8 8 Si 1.86800 * 120.00030 * 213.72205 * 6 4 3 9 9 H 1.48499 * 109.46902 * 95.00119 * 8 6 4 10 10 H 1.48498 * 109.47302 * 215.00340 * 8 6 4 11 11 H 1.48503 * 109.47168 * 335.00210 * 8 6 4 12 12 C 1.34772 * 120.00165 * 94.34222 * 3 2 1 13 13 O 1.21296 * 119.99911 * 185.25743 * 12 3 2 14 14 C 1.50701 * 120.00190 * 5.25093 * 12 3 2 15 15 C 1.52998 * 109.46733 * 76.85991 * 14 12 3 16 16 O 1.42903 * 109.47090 * 316.86406 * 14 12 3 17 17 C 1.52998 * 109.47097 * 196.86261 * 14 12 3 18 18 C 1.50705 * 109.46898 * 185.00132 * 17 14 12 19 19 C 1.38237 * 119.99837 * 89.99657 * 18 17 14 20 20 C 1.38240 * 119.99750 * 180.02562 * 19 18 17 21 21 C 1.38235 * 120.00076 * 359.95907 * 20 19 18 22 22 C 1.38242 * 120.00158 * 0.27708 * 21 20 19 23 23 C 1.38236 * 119.99867 * 270.02240 * 18 17 14 24 24 H 1.08996 * 109.47594 * 185.97520 * 1 2 3 25 25 H 1.08999 * 109.46872 * 305.97195 * 1 2 3 26 26 H 1.08997 * 109.47123 * 65.97189 * 1 2 3 27 27 H 1.09008 * 109.47344 * 239.99808 * 2 1 3 28 28 H 1.09007 * 109.47300 * 120.00023 * 2 1 3 29 29 H 0.97003 * 120.00228 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46934 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.47556 * 300.00356 * 15 14 12 32 32 H 1.09002 * 109.47304 * 60.00457 * 15 14 12 33 33 H 0.96693 * 113.99681 * 293.15526 * 16 14 12 34 34 H 1.08993 * 109.47268 * 65.00349 * 17 14 12 35 35 H 1.08998 * 109.47330 * 304.99905 * 17 14 12 36 36 H 1.07994 * 120.00267 * 0.02562 * 19 18 17 37 37 H 1.07991 * 119.99960 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00202 * 180.02562 * 21 20 19 39 39 H 1.07991 * 120.00220 * 179.72031 * 22 21 20 40 40 H 1.07999 * 120.00210 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1621 2.0574 -1.1839 5 1 2.4236 3.1052 -1.1790 6 6 1.9714 1.3946 -2.3902 7 7 1.0786 0.4343 -2.4783 8 14 2.9840 1.8686 -3.8866 9 1 4.1650 0.9741 -3.9887 10 1 2.1530 1.7329 -5.1099 11 1 3.4390 3.2757 -3.7510 12 6 2.3263 1.9870 1.1638 13 8 2.6391 3.1589 1.1732 14 6 2.2820 1.2086 2.4534 15 6 3.5224 0.3188 2.5548 16 8 1.1081 0.3940 2.4780 17 6 2.2533 2.1803 3.6349 18 6 2.3329 1.4051 4.9248 19 6 3.5640 1.1217 5.4860 20 6 3.6370 0.4101 6.6690 21 6 2.4789 -0.0172 7.2911 22 6 1.2479 0.2620 6.7274 23 6 1.1748 0.9770 5.5465 24 1 -0.3634 -1.0220 0.1070 25 1 -0.3633 0.6036 0.8317 26 1 -0.3633 0.4184 -0.9386 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.9452 -0.0282 -3.3204 30 1 3.4906 -0.2440 3.4878 31 1 3.5429 -0.3735 1.7131 32 1 4.4178 0.9401 2.5361 33 1 0.2825 0.8953 2.5226 34 1 1.3262 2.7530 3.6119 35 1 3.1023 2.8603 3.5667 36 1 4.4687 1.4561 5.0003 37 1 4.5988 0.1884 7.1072 38 1 2.5359 -0.5728 8.2156 39 1 0.3434 -0.0758 7.2111 40 1 0.2130 1.1977 5.1076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344184619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:23 Heat of formation + Delta-G solvation = -59.606838 kcal Electronic energy + Delta-G solvation = -22508.690683 eV Core-core repulsion = 19288.487595 eV Total energy + Delta-G solvation = -3220.203088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37316 -39.90613 -37.69479 -37.08419 -34.05113 -33.61541 -31.78294 -31.20100 -31.05510 -27.82968 -27.17320 -24.33773 -23.60262 -23.27157 -21.95209 -20.56747 -18.89564 -18.59261 -17.37291 -16.94085 -16.55838 -16.47790 -15.92129 -15.81745 -15.72737 -15.05143 -14.74645 -14.45346 -14.19495 -13.89880 -13.64047 -13.57650 -13.35286 -13.01541 -13.00241 -12.94135 -12.74237 -12.51354 -12.41232 -12.14289 -11.96770 -11.85780 -11.74625 -11.62698 -11.22808 -10.63142 -9.97363 -9.75794 -9.69826 -9.45842 -8.40310 -5.78065 0.53144 0.60764 1.32014 1.41797 1.52309 1.96971 2.26188 2.86965 2.96461 3.14564 3.30539 3.75137 3.94102 4.03362 4.16540 4.21958 4.26721 4.39385 4.56345 4.63119 4.73529 4.82693 4.85136 4.92215 4.99076 5.01391 5.06869 5.17222 5.23958 5.27981 5.31407 5.43427 5.58834 5.66874 5.71169 5.83371 6.01279 6.06155 6.21964 6.48409 6.71135 7.20670 7.54723 8.10390 8.55834 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034884 B = 0.004784 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.472662 B = 5851.264919 C = 6180.692374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.122 3.878 3 N -0.432 5.432 4 C -0.367 4.367 5 H 0.070 0.930 6 C 0.019 3.981 7 N -0.846 5.846 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.394 3.606 13 O -0.643 6.643 14 C 0.151 3.849 15 C -0.131 4.131 16 O -0.539 6.539 17 C -0.081 4.081 18 C -0.078 4.078 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.118 4.118 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.275 0.725 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.378 0.622 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 -5.863 15.038 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.000 4.000 3 N -0.148 5.148 4 C -0.494 4.494 5 H 0.088 0.912 6 C -0.187 4.187 7 N -0.482 5.482 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.205 1.205 12 C 0.183 3.817 13 O -0.533 6.533 14 C 0.107 3.893 15 C -0.188 4.188 16 O -0.347 6.347 17 C -0.120 4.120 18 C -0.078 4.078 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.096 -5.964 14.825 16.017 hybrid contribution -0.105 1.033 -1.249 1.624 sum 0.991 -4.931 13.575 14.477 Atomic orbital electron populations 1.21926 0.95520 1.00061 1.00836 1.21736 0.95674 0.81802 1.00822 1.44080 1.53261 1.12715 1.04787 1.19497 1.49548 0.96358 0.83983 0.91185 1.25782 0.95698 0.96498 1.00718 1.70292 1.25599 1.24512 1.27774 0.85356 0.79254 0.78559 0.77754 1.19548 1.19701 1.20480 1.21467 0.85601 0.87916 0.86668 1.90462 1.56932 1.18601 1.87299 1.20894 0.88390 0.90354 0.89632 1.21841 0.94367 0.99166 1.03415 1.86622 1.15363 1.36293 1.96373 1.20877 1.03504 0.96477 0.91096 1.19677 0.94321 0.98732 0.95086 1.21230 0.97035 0.99707 0.96708 1.21387 0.99667 0.98079 0.95161 1.21457 0.92299 1.00222 1.00785 1.21406 0.98904 0.98344 0.95616 1.21178 0.97859 0.98537 0.96006 0.92662 0.94551 0.92473 0.91944 0.90020 0.91469 0.89344 0.92481 0.91350 0.77172 0.91304 0.90918 0.86058 0.84117 0.83851 0.84182 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 9.17 71.98 0.66 -4.58 16 2 C 0.12 5.51 4.72 86.38 0.41 5.91 16 3 N -0.43 -22.32 2.63 -635.54 -1.67 -23.99 16 4 C -0.37 -21.01 9.38 84.04 0.79 -20.22 16 5 H 0.07 4.41 7.36 -2.91 -0.02 4.39 16 6 C 0.02 0.98 4.92 84.93 0.42 1.40 16 7 N -0.85 -42.81 8.47 21.66 0.18 -42.63 16 8 Si 0.97 42.02 29.66 68.60 2.03 44.05 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.39 19.41 6.62 87.66 0.58 19.99 16 13 O -0.64 -36.71 15.49 -3.08 -0.05 -36.76 16 14 C 0.15 5.55 0.65 -11.54 -0.01 5.54 16 15 C -0.13 -4.34 7.82 71.98 0.56 -3.78 16 16 O -0.54 -17.84 8.38 -148.98 -1.25 -19.09 16 17 C -0.08 -2.69 4.12 29.85 0.12 -2.57 16 18 C -0.08 -2.13 4.25 -19.86 -0.08 -2.21 16 19 C -0.13 -3.16 7.85 22.27 0.17 -2.98 16 20 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 21 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 22 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 23 C -0.12 -2.84 9.40 22.27 0.21 -2.63 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 1.39 5.91 -2.39 -0.01 1.38 16 26 H 0.06 2.75 6.11 -2.39 -0.01 2.74 16 27 H 0.06 3.08 5.88 -2.38 -0.01 3.07 16 28 H 0.08 3.34 3.96 -2.38 -0.01 3.34 16 29 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 30 H 0.09 2.56 6.14 -2.39 -0.01 2.55 16 31 H 0.06 1.99 6.51 -2.39 -0.02 1.98 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.38 11.22 7.56 -74.06 -0.56 10.66 16 34 H 0.07 2.29 8.08 -2.39 -0.02 2.27 16 35 H 0.07 2.64 7.68 -2.39 -0.02 2.62 16 36 H 0.12 2.86 8.03 -2.91 -0.02 2.84 16 37 H 0.14 2.11 8.06 -2.92 -0.02 2.08 16 38 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 39 H 0.14 2.11 8.06 -2.92 -0.02 2.09 16 40 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -65.65 315.04 4.25 -61.41 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.49 Total: 29.89 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 4.50 Total: -12.88 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -1.49 Total: -66.62 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -1.30 Total: -55.85 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -65.65 4.25 -61.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.799 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds