Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 O 1.42906 * 109.46592 * 134.99809 * 3 2 1 5 5 C 1.36000 * 116.99645 * 179.97438 * 4 3 2 6 6 C 1.38562 * 120.07208 * 0.02562 * 5 4 3 7 7 C 1.38243 * 119.99449 * 179.70115 * 6 5 4 8 8 C 1.38249 * 120.15069 * 0.54964 * 7 6 5 9 9 C 1.50697 * 119.93047 * 179.72429 * 8 7 6 10 10 N 1.46905 * 109.47066 * 269.72765 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46907 * 60.00117 * 16 14 12 18 18 H 1.48504 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47302 * 300.00070 * 16 14 12 20 20 C 1.38245 * 120.14072 * 359.44956 * 8 7 6 21 21 C 1.38562 * 120.00279 * 0.27376 * 20 8 7 22 22 O 1.35992 * 120.07338 * 179.97438 * 21 20 8 23 23 C 1.42896 * 116.99962 * 0.02562 * 22 21 20 24 24 H 1.07999 * 119.99482 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00091 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99482 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47356 * 15.00454 * 3 2 1 28 28 H 1.08997 * 109.46833 * 254.99764 * 3 2 1 29 29 H 1.07996 * 120.00196 * 0.02562 * 6 5 4 30 30 H 1.08008 * 119.92555 * 180.29190 * 7 6 5 31 31 H 1.09001 * 109.47558 * 149.72929 * 9 8 7 32 32 H 1.08998 * 109.47216 * 29.72591 * 9 8 7 33 33 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 34 34 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 35 35 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 36 36 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 37 37 H 1.08003 * 119.99470 * 180.24858 * 20 8 7 38 38 H 1.09001 * 109.47519 * 299.99677 * 23 22 21 39 39 H 1.09003 * 109.47424 * 60.00353 * 23 22 21 40 40 H 1.09010 * 109.47350 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9528 5 6 3.9103 2.3457 1.0784 6 6 3.6608 3.4660 0.3022 7 6 4.4544 4.5900 0.4356 8 6 5.5049 4.5956 1.3344 9 6 6.3707 5.8213 1.4714 10 7 7.5002 5.7300 0.5365 11 6 8.3683 6.9103 0.6427 12 6 9.5126 6.7813 -0.3294 13 1 9.5877 5.9095 -0.9624 14 6 10.4642 7.7758 -0.4099 15 7 10.3730 8.8372 0.3614 16 14 11.8830 7.6156 -1.6143 17 1 11.3499 7.5165 -2.9968 18 1 12.7605 8.8088 -1.5070 19 1 12.6662 6.3945 -1.2970 20 6 5.7592 3.4811 2.1119 21 6 4.9640 2.3532 1.9872 22 8 5.2132 1.2559 2.7509 23 6 6.3111 1.3354 3.6621 24 1 -0.5399 0.9354 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3856 2.1161 0.2660 28 1 2.4755 1.4867 -0.9926 29 1 2.8431 3.4629 -0.4033 30 1 4.2560 5.4643 -0.1667 31 1 6.7482 5.8875 2.4918 32 1 5.7816 6.7096 1.2436 33 1 7.1763 5.6030 -0.4106 34 1 7.7932 7.8064 0.4094 35 1 8.7595 6.9834 1.6574 36 1 11.0423 9.5369 0.3045 37 1 6.5780 3.4895 2.8162 38 1 7.2309 1.5212 3.1074 39 1 6.1407 2.1498 4.3663 40 1 6.3991 0.3960 4.2080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345306473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -49.882009 kcal Electronic energy + Delta-G solvation = -20493.336136 eV Core-core repulsion = 17273.554748 eV Total energy + Delta-G solvation = -3219.781388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57262 -39.55398 -38.59698 -36.65615 -35.02918 -34.45022 -31.74329 -31.21899 -29.07034 -27.96756 -27.48157 -25.56981 -23.51469 -23.23155 -22.20049 -20.84345 -19.42618 -18.67016 -17.99789 -17.74382 -17.15341 -16.76245 -16.43028 -16.16981 -15.93635 -15.50868 -15.32332 -15.14120 -14.75635 -14.40389 -14.12429 -13.69757 -13.54695 -13.37060 -13.15156 -12.84164 -12.63607 -12.58050 -12.37296 -12.24101 -12.13320 -11.90863 -11.82829 -11.80669 -11.31369 -10.65942 -10.41171 -9.68755 -9.16972 -8.75612 -8.22520 -6.33863 0.29269 0.40414 1.15460 1.41511 1.44879 1.52995 2.35847 2.39258 2.40232 2.67789 3.10537 3.66700 3.73784 3.86983 4.02675 4.04164 4.11782 4.21962 4.33794 4.36353 4.39777 4.43850 4.56650 4.57166 4.68381 4.73716 4.79107 4.98026 5.06865 5.14237 5.23241 5.28902 5.59738 5.62278 5.63314 5.66660 5.73062 6.01020 6.11450 6.42462 6.60989 6.69134 6.87441 7.36884 8.88538 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024463 B = 0.003082 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.321365 B = 9082.651941 C = 9523.939689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.177 4.177 3 C 0.078 3.922 4 O -0.321 6.321 5 C 0.084 3.916 6 C -0.165 4.165 7 C -0.112 4.112 8 C -0.078 4.078 9 C 0.102 3.898 10 N -0.684 5.684 11 C 0.208 3.792 12 C -0.537 4.537 13 H 0.063 0.937 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.973 3.027 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.155 4.155 21 C 0.082 3.918 22 O -0.327 6.327 23 C 0.020 3.980 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.335 0.665 34 H -0.035 1.035 35 H 0.002 0.998 36 H 0.266 0.734 37 H 0.138 0.862 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.517 -15.686 1.426 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.004 3.996 4 O -0.236 6.236 5 C 0.039 3.961 6 C -0.183 4.183 7 C -0.131 4.131 8 C -0.079 4.079 9 C -0.027 4.027 10 N -0.314 5.314 11 C 0.081 3.919 12 C -0.575 4.575 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.174 4.174 21 C 0.036 3.964 22 O -0.241 6.241 23 C -0.075 4.075 24 H 0.129 0.871 25 H 0.140 0.860 26 H 0.132 0.868 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.179 0.821 30 H 0.157 0.843 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.153 0.847 34 H -0.018 1.018 35 H 0.020 0.980 36 H 0.074 0.926 37 H 0.156 0.844 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.132 -16.260 2.019 24.438 hybrid contribution 0.592 1.256 -0.737 1.572 sum -17.539 -15.004 1.282 23.117 Atomic orbital electron populations 1.24107 0.94808 1.03787 0.96777 1.22678 0.96263 0.97306 1.03212 1.22071 0.87538 0.97875 0.92131 1.86147 1.42769 1.35086 1.59600 1.18379 0.92381 0.88204 0.97171 1.21231 1.03184 0.92060 1.01856 1.20980 0.94865 0.98894 0.98385 1.19569 0.96132 0.95104 0.97124 1.20795 0.90604 0.93581 0.97736 1.60595 1.18698 1.42250 1.09892 1.19226 0.91096 0.85808 0.95782 1.21502 1.09400 1.05140 1.21483 0.91896 1.25942 1.01063 0.94641 0.97984 1.70081 1.36854 1.09694 1.40673 0.85388 0.78248 0.77633 0.79046 1.19085 1.20705 1.19428 1.21011 1.00717 0.92330 1.03385 1.18407 0.95533 0.87898 0.94538 1.86099 1.51235 1.35062 1.51714 1.23297 0.87419 1.05044 0.91728 0.87128 0.86006 0.86766 0.90251 0.90275 0.82097 0.84273 0.91408 0.94705 0.84746 1.01763 0.97986 0.92562 0.84385 0.92658 0.91988 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 14.31 67.78 0.97 -0.78 16 2 C -0.18 -2.74 9.89 25.64 0.25 -2.48 16 3 C 0.08 1.39 5.16 71.24 0.37 1.76 16 4 O -0.32 -8.52 9.91 -79.68 -0.79 -9.31 16 5 C 0.08 2.36 6.70 22.57 0.15 2.52 16 6 C -0.16 -3.97 9.04 22.35 0.20 -3.77 16 7 C -0.11 -3.02 9.69 22.27 0.22 -2.80 16 8 C -0.08 -2.46 5.39 -19.86 -0.11 -2.57 16 9 C 0.10 3.68 5.81 85.55 0.50 4.18 16 10 N -0.68 -29.99 6.48 -521.98 -3.38 -33.37 16 11 C 0.21 11.24 5.44 85.56 0.47 11.71 16 12 C -0.54 -30.88 9.32 25.60 0.24 -30.64 16 13 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 14 C 0.00 0.12 5.46 84.66 0.46 0.58 16 15 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 16 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C -0.16 -4.74 8.69 22.35 0.19 -4.55 16 21 C 0.08 2.47 6.70 22.57 0.15 2.62 16 22 O -0.33 -9.46 10.28 -79.60 -0.82 -10.28 16 23 C 0.02 0.41 9.81 113.37 1.11 1.52 16 24 H 0.11 0.96 7.90 -2.91 -0.02 0.94 16 25 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 26 H 0.11 1.83 8.06 -2.91 -0.02 1.80 16 27 H 0.08 1.16 7.38 -2.39 -0.02 1.14 16 28 H 0.08 1.25 7.66 -2.39 -0.02 1.23 16 29 H 0.16 2.77 6.30 -2.91 -0.02 2.75 16 30 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 32 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.34 14.08 8.72 -89.69 -0.78 13.30 16 34 H -0.04 -2.02 8.14 -2.39 -0.02 -2.04 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.29 16 37 H 0.14 4.02 6.30 -2.91 -0.02 4.00 16 38 H 0.05 1.18 7.66 -2.39 -0.02 1.16 16 39 H 0.06 1.18 7.66 -2.39 -0.02 1.16 16 40 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -69.00 342.68 2.74 -66.25 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.25 Total: 19.12 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 5.17 Total: -22.70 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.10 Total: -89.49 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.61 Total: -19.59 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.00 2.74 -66.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345306473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.372 kcal (2) G-P(sol) polarization free energy of solvation -68.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds