Wall clock time and date at job start Mon Mar 30 2020 01:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47059 * 2 1 4 4 C 1.37093 * 120.00086 * 265.97116 * 3 2 1 5 5 H 1.08003 * 120.00236 * 144.71909 * 4 3 2 6 6 C 1.38952 * 119.99773 * 324.70508 * 4 3 2 7 7 N 1.31411 * 119.99527 * 157.08582 * 6 4 3 8 8 Si 1.86795 * 120.00111 * 337.08700 * 6 4 3 9 9 H 1.48497 * 109.47244 * 95.31621 * 8 6 4 10 10 H 1.48500 * 109.47417 * 215.31656 * 8 6 4 11 11 H 1.48500 * 109.47308 * 335.31659 * 8 6 4 12 12 C 1.34782 * 119.99658 * 85.96078 * 3 2 1 13 13 O 1.21289 * 119.99881 * 5.40883 * 12 3 2 14 14 C 1.50705 * 119.99720 * 185.39896 * 12 3 2 15 15 H 1.08996 * 109.46747 * 49.28598 * 14 12 3 16 16 C 1.52999 * 109.47333 * 289.28730 * 14 12 3 17 17 C 1.50700 * 109.46883 * 169.28797 * 14 12 3 18 18 C 1.38282 * 119.97223 * 59.97883 * 17 14 12 19 19 C 1.38244 * 120.11287 * 180.02562 * 18 17 14 20 20 C 1.38172 * 120.05435 * 359.97244 * 19 18 17 21 21 C 1.38706 * 119.94179 * 359.77314 * 20 19 18 22 22 O 1.35895 * 120.05774 * 180.25522 * 21 20 19 23 23 C 1.42902 * 116.99738 * 0.25223 * 22 21 20 24 24 C 1.38117 * 119.97137 * 240.00323 * 17 14 12 25 25 H 1.09000 * 109.47082 * 64.73968 * 1 2 3 26 26 H 1.08998 * 109.47226 * 184.72912 * 1 2 3 27 27 H 1.09000 * 109.47715 * 304.73942 * 1 2 3 28 28 H 1.08998 * 109.47303 * 240.00709 * 2 1 3 29 29 H 1.08995 * 109.46931 * 119.99941 * 2 1 3 30 30 H 0.97006 * 119.99342 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47019 * 54.44536 * 16 14 12 32 32 H 1.08994 * 109.47045 * 174.45081 * 16 14 12 33 33 H 1.09005 * 109.46954 * 294.45051 * 16 14 12 34 34 H 1.08002 * 119.94564 * 0.04453 * 18 17 14 35 35 H 1.08001 * 119.97200 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.02510 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.47325 * 60.00510 * 23 22 21 38 38 H 1.09007 * 109.47231 * 180.02562 * 23 22 21 39 39 H 1.08998 * 109.47362 * 299.99586 * 23 22 21 40 40 H 1.08000 * 120.02859 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3255 1.9998 -1.1843 5 1 2.1335 3.0554 -1.3080 6 6 2.8840 1.2685 -2.2255 7 7 2.7704 1.6956 -3.4631 8 14 3.7963 -0.3214 -1.8660 9 1 2.8720 -1.4714 -2.0345 10 1 4.9369 -0.4613 -2.8065 11 1 4.3052 -0.2956 -0.4712 12 6 2.1654 2.0440 1.1644 13 8 1.9881 1.4676 2.2168 14 6 2.5504 3.5010 1.1586 15 1 1.9047 4.0446 0.4691 16 6 4.0069 3.6420 0.7120 17 6 2.3935 4.0675 2.5463 18 6 3.1180 3.5339 3.5963 19 6 2.9759 4.0509 4.8705 20 6 2.1095 5.1030 5.0978 21 6 1.3856 5.6434 4.0452 22 8 0.5367 6.6816 4.2652 23 6 0.4432 7.1705 5.6047 24 6 1.5257 5.1188 2.7683 25 1 -0.3633 0.4385 -0.9294 26 1 -0.3633 -1.0241 0.0847 27 1 -0.3634 0.5856 0.8444 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1601 1.1849 -4.1900 31 1 4.1420 3.1450 -0.2487 32 1 4.2559 4.6985 0.6128 33 1 4.6605 3.1827 1.4537 34 1 3.7963 2.7120 3.4206 35 1 3.5432 3.6327 5.6889 36 1 1.9992 5.5068 6.0933 37 1 1.4224 7.5182 5.9338 38 1 -0.2671 7.9965 5.6412 39 1 0.1025 6.3696 6.2608 40 1 0.9601 5.5352 1.9479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346530473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:48 Heat of formation + Delta-G solvation = -40.379150 kcal Electronic energy + Delta-G solvation = -21972.768726 eV Core-core repulsion = 18753.399413 eV Total energy + Delta-G solvation = -3219.369313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.07067 -39.05298 -37.22655 -35.06228 -33.36868 -32.12287 -30.54803 -29.99054 -28.42226 -27.21940 -25.04749 -23.95403 -22.75655 -22.23254 -20.69227 -18.93759 -17.71792 -16.55285 -16.35874 -15.90901 -15.64308 -15.51918 -15.34312 -14.36135 -13.97121 -13.74056 -13.38826 -13.27689 -13.06165 -12.70970 -12.53759 -12.28111 -12.09561 -12.01651 -11.68951 -11.48003 -11.35210 -10.99823 -10.95463 -10.86987 -10.69620 -10.57532 -10.28865 -10.07777 -9.80112 -9.18190 -8.65987 -8.33943 -7.85399 -7.81375 -6.51338 -4.05926 1.64385 1.81865 3.02930 3.20296 3.28424 3.37887 3.72591 4.05245 4.10687 4.47180 4.91354 4.95315 5.06796 5.10004 5.18273 5.36202 5.42065 5.63709 5.74445 5.76616 5.81714 5.90398 5.99972 6.07378 6.12784 6.16842 6.32997 6.40944 6.51375 6.54902 6.58193 6.65403 6.76806 6.88129 6.97857 7.07046 7.14857 7.35295 7.61359 8.04630 8.22770 8.92833 9.34866 9.68414 10.59081 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027677 B = 0.004783 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.428158 B = 5852.589034 C = 5940.638554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.098 3.902 3 N -0.463 5.463 4 C -0.343 4.343 5 H 0.107 0.893 6 C 0.067 3.933 7 N -0.857 5.857 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.261 1.261 12 C 0.487 3.513 13 O -0.590 6.590 14 C -0.054 4.054 15 H 0.097 0.903 16 C -0.139 4.139 17 C -0.015 4.015 18 C -0.111 4.111 19 C -0.090 4.090 20 C -0.216 4.216 21 C 0.115 3.885 22 O -0.321 6.321 23 C 0.030 3.970 24 C -0.146 4.146 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.275 0.725 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 5.990 11.835 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.025 4.025 3 N -0.184 5.184 4 C -0.470 4.470 5 H 0.125 0.875 6 C -0.140 4.140 7 N -0.492 5.492 8 Si 0.701 3.299 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.185 1.185 12 C 0.276 3.724 13 O -0.475 6.475 14 C -0.075 4.075 15 H 0.115 0.885 16 C -0.196 4.196 17 C -0.016 4.016 18 C -0.129 4.129 19 C -0.108 4.108 20 C -0.235 4.235 21 C 0.071 3.929 22 O -0.235 6.235 23 C -0.065 4.065 24 C -0.165 4.165 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.680 5.772 11.982 13.317 hybrid contribution 0.456 -0.869 0.152 0.993 sum -0.225 4.904 12.134 13.090 Atomic orbital electron populations 1.21994 0.96454 1.00622 1.02283 1.21552 0.94496 0.85428 1.01037 1.43729 1.57111 1.11590 1.05931 1.19065 1.42259 0.97029 0.88651 0.87546 1.25262 0.96082 0.98031 0.94612 1.69785 1.40741 1.40070 0.98618 0.87019 0.79986 0.83500 0.79406 1.20231 1.21563 1.18525 1.20082 0.80108 0.88774 0.83457 1.90553 1.55950 1.69702 1.31282 1.20004 1.00023 0.94629 0.92886 0.88514 1.21767 0.92650 1.01585 1.03592 1.19449 0.93702 0.93100 0.95318 1.20894 1.00632 0.99450 0.91943 1.20849 0.97547 0.95459 0.96964 1.21071 1.02634 1.01769 0.98014 1.18877 0.91287 0.88611 0.94173 1.86045 1.60424 1.47136 1.29899 1.22967 1.01911 0.99206 0.82429 1.20286 1.02255 0.99171 0.94778 0.92094 0.93097 0.92759 0.91623 0.91538 0.91486 0.88853 0.92828 0.93252 0.85876 0.86325 0.86213 0.92955 0.88670 0.92939 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.21 37.16 0.38 -2.67 16 2 C 0.10 2.17 4.81 -4.04 -0.02 2.15 16 3 N -0.46 -10.95 2.22 -114.81 -0.26 -11.20 16 4 C -0.34 -8.54 7.28 -14.93 -0.11 -8.65 16 5 H 0.11 2.74 6.81 -52.48 -0.36 2.39 16 6 C 0.07 1.72 5.29 -17.47 -0.09 1.63 16 7 N -0.86 -22.90 13.96 55.50 0.77 -22.13 16 8 Si 0.87 20.04 24.98 -169.99 -4.25 15.80 16 9 H -0.28 -6.13 6.65 56.52 0.38 -5.75 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.49 11.16 6.84 -10.98 -0.08 11.08 16 13 O -0.59 -14.51 14.38 5.55 0.08 -14.43 16 14 C -0.05 -1.07 2.11 -92.92 -0.20 -1.26 16 15 H 0.10 1.89 6.99 -51.93 -0.36 1.52 16 16 C -0.14 -2.53 8.91 37.16 0.33 -2.20 16 17 C -0.02 -0.28 4.50 -104.65 -0.47 -0.75 16 18 C -0.11 -1.96 7.77 -39.56 -0.31 -2.27 16 19 C -0.09 -1.36 10.04 -39.60 -0.40 -1.76 16 20 C -0.22 -3.11 9.04 -39.43 -0.36 -3.46 16 21 C 0.11 1.82 6.69 -39.22 -0.26 1.56 16 22 O -0.32 -4.60 10.50 -19.41 -0.20 -4.80 16 23 C 0.03 0.29 9.81 101.05 0.99 1.28 16 24 C -0.15 -2.53 9.61 -39.43 -0.38 -2.91 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.48 3.21 -51.93 -0.17 1.32 16 29 H 0.07 1.47 7.48 -51.93 -0.39 1.08 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.09 1.90 6.10 -51.93 -0.32 1.58 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.86 7.21 -51.93 -0.37 0.49 16 34 H 0.12 2.24 7.22 -52.49 -0.38 1.86 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.12 1.37 6.30 -52.49 -0.33 1.03 16 37 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 40 H 0.13 2.07 7.94 -52.49 -0.42 1.66 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -29.04 321.48 -5.56 -34.59 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.59 Total: 5.56 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.96 Total: -8.23 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.52 Total: -33.33 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.12 Total: -19.23 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.25 Total: 15.80 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.04 -5.56 -34.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346530473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.788 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds