Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47059 * 2 1 4 4 C 1.37093 * 120.00086 * 265.97116 * 3 2 1 5 5 H 1.08003 * 120.00236 * 144.71909 * 4 3 2 6 6 C 1.38952 * 119.99773 * 324.70508 * 4 3 2 7 7 N 1.31411 * 119.99527 * 157.08582 * 6 4 3 8 8 Si 1.86795 * 120.00111 * 337.08700 * 6 4 3 9 9 H 1.48497 * 109.47244 * 95.31621 * 8 6 4 10 10 H 1.48500 * 109.47417 * 215.31656 * 8 6 4 11 11 H 1.48500 * 109.47308 * 335.31659 * 8 6 4 12 12 C 1.34782 * 119.99658 * 85.96078 * 3 2 1 13 13 O 1.21289 * 119.99881 * 5.40883 * 12 3 2 14 14 C 1.50705 * 119.99720 * 185.39896 * 12 3 2 15 15 H 1.08996 * 109.46747 * 49.28598 * 14 12 3 16 16 C 1.52999 * 109.47333 * 289.28730 * 14 12 3 17 17 C 1.50700 * 109.46883 * 169.28797 * 14 12 3 18 18 C 1.38282 * 119.97223 * 59.97883 * 17 14 12 19 19 C 1.38244 * 120.11287 * 180.02562 * 18 17 14 20 20 C 1.38172 * 120.05435 * 359.97244 * 19 18 17 21 21 C 1.38706 * 119.94179 * 359.77314 * 20 19 18 22 22 O 1.35895 * 120.05774 * 180.25522 * 21 20 19 23 23 C 1.42902 * 116.99738 * 0.25223 * 22 21 20 24 24 C 1.38117 * 119.97137 * 240.00323 * 17 14 12 25 25 H 1.09000 * 109.47082 * 64.73968 * 1 2 3 26 26 H 1.08998 * 109.47226 * 184.72912 * 1 2 3 27 27 H 1.09000 * 109.47715 * 304.73942 * 1 2 3 28 28 H 1.08998 * 109.47303 * 240.00709 * 2 1 3 29 29 H 1.08995 * 109.46931 * 119.99941 * 2 1 3 30 30 H 0.97006 * 119.99342 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47019 * 54.44536 * 16 14 12 32 32 H 1.08994 * 109.47045 * 174.45081 * 16 14 12 33 33 H 1.09005 * 109.46954 * 294.45051 * 16 14 12 34 34 H 1.08002 * 119.94564 * 0.04453 * 18 17 14 35 35 H 1.08001 * 119.97200 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.02510 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.47325 * 60.00510 * 23 22 21 38 38 H 1.09007 * 109.47231 * 180.02562 * 23 22 21 39 39 H 1.08998 * 109.47362 * 299.99586 * 23 22 21 40 40 H 1.08000 * 120.02859 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3255 1.9998 -1.1843 5 1 2.1335 3.0554 -1.3080 6 6 2.8840 1.2685 -2.2255 7 7 2.7704 1.6956 -3.4631 8 14 3.7963 -0.3214 -1.8660 9 1 2.8720 -1.4714 -2.0345 10 1 4.9369 -0.4613 -2.8065 11 1 4.3052 -0.2956 -0.4712 12 6 2.1654 2.0440 1.1644 13 8 1.9881 1.4676 2.2168 14 6 2.5504 3.5010 1.1586 15 1 1.9047 4.0446 0.4691 16 6 4.0069 3.6420 0.7120 17 6 2.3935 4.0675 2.5463 18 6 3.1180 3.5339 3.5963 19 6 2.9759 4.0509 4.8705 20 6 2.1095 5.1030 5.0978 21 6 1.3856 5.6434 4.0452 22 8 0.5367 6.6816 4.2652 23 6 0.4432 7.1705 5.6047 24 6 1.5257 5.1188 2.7683 25 1 -0.3633 0.4385 -0.9294 26 1 -0.3633 -1.0241 0.0847 27 1 -0.3634 0.5856 0.8444 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1601 1.1849 -4.1900 31 1 4.1420 3.1450 -0.2487 32 1 4.2559 4.6985 0.6128 33 1 4.6605 3.1827 1.4537 34 1 3.7963 2.7120 3.4206 35 1 3.5432 3.6327 5.6889 36 1 1.9992 5.5068 6.0933 37 1 1.4224 7.5182 5.9338 38 1 -0.2671 7.9965 5.6412 39 1 0.1025 6.3696 6.2608 40 1 0.9601 5.5352 1.9479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346530473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = -56.895581 kcal Electronic energy + Delta-G solvation = -21973.484932 eV Core-core repulsion = 18753.399413 eV Total energy + Delta-G solvation = -3220.085519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43393 -40.57526 -38.50456 -36.89231 -34.86015 -34.05951 -31.91951 -31.45479 -29.78636 -28.09196 -26.95208 -25.57215 -24.29421 -23.46355 -22.10623 -20.68909 -19.16316 -18.10437 -18.05485 -17.26737 -17.05112 -16.78351 -16.58508 -15.97668 -15.69533 -15.19878 -15.04743 -14.67940 -14.40701 -14.31862 -13.99209 -13.93967 -13.54990 -13.22728 -13.13325 -12.96360 -12.85036 -12.67116 -12.53854 -12.23906 -12.15484 -11.95708 -11.84155 -11.63104 -11.57902 -11.04151 -10.37178 -9.79968 -9.66216 -9.06325 -8.49156 -6.04940 0.39244 0.57035 1.19006 1.33062 1.43688 1.90385 2.19261 2.36661 2.60264 2.90265 3.03797 3.77513 3.91113 4.00831 4.14010 4.21791 4.32535 4.35381 4.40191 4.43705 4.47902 4.48630 4.49931 4.61791 4.75085 4.76668 4.81358 4.96041 5.01453 5.04435 5.13499 5.23636 5.34642 5.41708 5.47888 5.56108 5.78650 5.86308 6.08640 6.29160 6.52011 6.97846 7.44351 7.80437 8.64739 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027677 B = 0.004783 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.428158 B = 5852.589034 C = 5940.638554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.089 3.911 3 N -0.474 5.474 4 C -0.335 4.335 5 H 0.089 0.911 6 C 0.035 3.965 7 N -0.892 5.892 8 Si 0.919 3.081 9 H -0.261 1.261 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.483 3.517 13 O -0.607 6.607 14 C -0.050 4.050 15 H 0.090 0.910 16 C -0.130 4.130 17 C -0.033 4.033 18 C -0.131 4.131 19 C -0.085 4.085 20 C -0.208 4.208 21 C 0.114 3.886 22 O -0.338 6.338 23 C 0.018 3.982 24 C -0.166 4.166 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.279 0.721 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.063 0.937 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 6.241 14.013 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 N -0.195 5.195 4 C -0.462 4.462 5 H 0.107 0.893 6 C -0.170 4.170 7 N -0.529 5.529 8 Si 0.746 3.254 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.273 3.727 13 O -0.492 6.492 14 C -0.071 4.071 15 H 0.108 0.892 16 C -0.187 4.187 17 C -0.033 4.033 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.226 4.226 21 C 0.069 3.931 22 O -0.252 6.252 23 C -0.076 4.076 24 C -0.185 4.185 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.167 0.833 36 H 0.174 0.826 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.771 6.023 14.166 15.412 hybrid contribution 0.418 -0.838 -0.391 1.015 sum -0.353 5.185 13.775 14.723 Atomic orbital electron populations 1.21912 0.94529 1.02554 1.01405 1.21700 0.96208 0.84677 1.00809 1.43873 1.57610 1.12271 1.05727 1.18918 1.41827 0.96440 0.89002 0.89327 1.25695 0.96520 1.00433 0.94338 1.69836 1.42118 1.41637 0.99350 0.86278 0.79281 0.81322 0.78550 1.18692 1.21204 1.19468 1.20639 0.79193 0.89972 0.82918 1.90522 1.56509 1.70483 1.31724 1.19951 1.00466 0.92461 0.94256 0.89158 1.21679 0.92047 1.02791 1.02210 1.19344 0.95185 0.94189 0.94622 1.20908 1.01126 0.99836 0.93116 1.21183 0.97377 0.95149 0.96616 1.21443 1.01139 1.00837 0.99217 1.18970 0.91361 0.88838 0.93900 1.86033 1.59855 1.46474 1.32867 1.23345 1.03646 1.00240 0.80351 1.20348 1.02597 0.99556 0.95958 0.92878 0.89748 0.93643 0.91910 0.91532 0.91101 0.91227 0.90638 0.92725 0.87186 0.83321 0.82646 0.91408 0.86329 0.91882 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 10.21 71.98 0.74 -4.86 16 2 C 0.09 3.89 4.81 86.38 0.42 4.31 16 3 N -0.47 -22.67 2.22 -635.52 -1.41 -24.08 16 4 C -0.33 -17.01 7.28 84.04 0.61 -16.40 16 5 H 0.09 4.76 6.81 -2.91 -0.02 4.74 16 6 C 0.03 1.78 5.29 84.93 0.45 2.23 16 7 N -0.89 -48.31 13.96 21.66 0.30 -48.01 16 8 Si 0.92 41.19 24.98 68.60 1.71 42.90 16 9 H -0.26 -11.01 6.65 99.48 0.66 -10.35 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.48 22.48 6.84 87.66 0.60 23.08 16 13 O -0.61 -30.05 14.38 -3.06 -0.04 -30.09 16 14 C -0.05 -2.03 2.11 -12.28 -0.03 -2.05 16 15 H 0.09 3.68 6.99 -2.39 -0.02 3.67 16 16 C -0.13 -4.82 8.91 71.98 0.64 -4.18 16 17 C -0.03 -1.22 4.50 -19.88 -0.09 -1.30 16 18 C -0.13 -4.56 7.77 22.28 0.17 -4.39 16 19 C -0.09 -2.37 10.04 22.26 0.22 -2.15 16 20 C -0.21 -5.33 9.04 22.37 0.20 -5.13 16 21 C 0.11 3.42 6.69 22.51 0.15 3.57 16 22 O -0.34 -8.97 10.50 -92.37 -0.97 -9.94 16 23 C 0.02 0.29 9.81 113.37 1.11 1.40 16 24 C -0.17 -5.71 9.61 22.37 0.21 -5.50 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 2.78 3.21 -2.39 -0.01 2.77 16 29 H 0.07 2.90 7.48 -2.39 -0.02 2.88 16 30 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 31 H 0.07 2.91 6.10 -2.39 -0.01 2.89 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 1.93 7.21 -2.38 -0.02 1.91 16 34 H 0.11 4.02 7.22 -2.91 -0.02 4.00 16 35 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 36 H 0.16 2.81 6.30 -2.91 -0.02 2.79 16 37 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 38 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.06 0.86 7.65 -2.39 -0.02 0.85 16 40 H 0.12 4.18 7.94 -2.91 -0.02 4.15 16 Total: -1.00 -62.34 321.48 6.00 -56.35 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.99 Total: 24.25 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 5.41 Total: -11.38 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.11 Total: -72.09 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.01 Total: -40.03 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.71 Total: 42.90 kcal Total: -62.34 6.00 -56.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346530473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.548 kcal (2) G-P(sol) polarization free energy of solvation -62.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds