Wall clock time and date at job start Mon Mar 30 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00243 * 2 1 4 4 C 1.52995 * 109.47152 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47121 * 64.99937 * 4 3 2 6 6 C 1.34769 * 119.99929 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00156 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47348 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47385 * 53.81101 * 9 8 6 11 11 C 1.50707 * 109.46800 * 293.80633 * 9 8 6 12 12 H 1.07996 * 119.99939 * 324.79144 * 11 9 8 13 13 C 1.37876 * 119.99516 * 144.79724 * 11 9 8 14 14 N 1.31517 * 119.99498 * 181.40280 * 13 11 9 15 15 Si 1.86799 * 120.00347 * 1.40222 * 13 11 9 16 16 H 1.48496 * 109.47059 * 267.09616 * 15 13 11 17 17 H 1.48498 * 109.46945 * 27.10055 * 15 13 11 18 18 H 1.48502 * 109.46861 * 147.09689 * 15 13 11 19 19 C 1.50699 * 109.46966 * 173.80920 * 9 8 6 20 20 C 1.38237 * 120.00135 * 66.64777 * 19 9 8 21 21 C 1.38237 * 120.00124 * 179.80917 * 20 19 9 22 22 C 1.38241 * 119.99834 * 0.39586 * 21 20 19 23 23 C 1.38239 * 119.99727 * 359.85702 * 22 21 20 24 24 C 1.38229 * 120.00171 * 359.95425 * 23 22 21 25 25 H 1.08999 * 109.46915 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47026 * 300.00481 * 1 2 3 27 27 H 1.09000 * 109.47073 * 60.00160 * 1 2 3 28 28 H 1.09002 * 109.46905 * 59.99495 * 3 2 1 29 29 H 1.08995 * 109.46750 * 300.00079 * 3 2 1 30 30 H 1.08999 * 109.47126 * 305.00121 * 4 3 2 31 31 H 1.09003 * 109.46688 * 184.99500 * 4 3 2 32 32 H 0.97005 * 119.99423 * 0.02562 * 5 4 3 33 33 H 1.09004 * 109.46561 * 60.00018 * 8 6 5 34 34 H 1.09003 * 109.46933 * 300.01124 * 8 6 5 35 35 H 0.96996 * 119.99967 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.00352 * 359.97438 * 20 19 9 37 37 H 1.07995 * 120.00255 * 180.23001 * 21 20 19 38 38 H 1.07995 * 119.99860 * 179.82910 * 22 21 20 39 39 H 1.08003 * 119.99758 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99873 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 5.2895 0.3559 -1.4737 7 8 6.1056 0.6821 -0.6380 8 6 5.7434 -0.2832 -2.7609 9 6 7.2686 -0.4039 -2.7603 10 1 7.5914 -0.9257 -1.8595 11 6 7.8814 0.9726 -2.7905 12 1 7.4021 1.7649 -3.3462 13 6 9.0540 1.2202 -2.1089 14 7 9.5741 2.4281 -2.1125 15 14 9.9038 -0.1599 -1.1801 16 1 9.4461 -0.1611 0.2325 17 1 9.5672 -1.4615 -1.8108 18 1 11.3738 0.0458 -1.2240 19 6 7.7116 -1.1779 -3.9751 20 6 7.5368 -0.6424 -5.2375 21 6 7.9468 -1.3506 -6.3516 22 6 8.5242 -2.5979 -6.2038 23 6 8.6942 -3.1356 -4.9417 24 6 8.2878 -2.4257 -3.8274 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1765 0.0901 32 1 3.3239 0.3033 -1.9195 33 1 5.4275 0.3324 -3.6032 34 1 5.3006 -1.2752 -2.8498 35 1 10.3989 2.6024 -1.6326 36 1 7.0823 0.3305 -5.3532 37 1 7.8137 -0.9306 -7.3376 38 1 8.8420 -3.1524 -7.0743 39 1 9.1449 -4.1103 -4.8262 40 1 8.4210 -2.8457 -2.8413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353333582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:41 Heat of formation + Delta-G solvation = -62.912059 kcal Electronic energy + Delta-G solvation = -21292.522818 eV Core-core repulsion = 18072.176405 eV Total energy + Delta-G solvation = -3220.346413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.22618 -38.45867 -37.83674 -34.49915 -33.79135 -31.63247 -30.19584 -30.03080 -28.61046 -26.55927 -25.65095 -22.93194 -22.17964 -21.77250 -20.20025 -19.12683 -16.90528 -16.76456 -16.57683 -16.23789 -15.92538 -15.16473 -14.69851 -14.61094 -14.32751 -14.10732 -13.71353 -13.19432 -12.80282 -12.69858 -12.48315 -12.45731 -12.16541 -11.83161 -11.80960 -11.65799 -11.28501 -10.96752 -10.70623 -10.49124 -10.30707 -9.93073 -9.82535 -9.56599 -9.10851 -8.87920 -8.52870 -8.37032 -8.16482 -7.77407 -5.93558 -3.90682 2.13362 2.18278 3.47559 3.51614 3.52856 3.55388 3.58915 3.77162 4.56288 4.63218 4.84567 5.00978 5.13150 5.14941 5.24577 5.36665 5.42278 5.55137 5.59444 5.68208 5.72880 5.78711 6.00141 6.04070 6.08550 6.15896 6.28709 6.37483 6.66828 6.73539 6.87625 6.88483 6.98865 7.07443 7.17747 7.31226 7.62438 7.77385 7.87348 8.12763 8.57787 9.04594 9.09397 9.71710 11.19533 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.005203 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.479084 B = 5379.933961 C = 6496.744521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.743 5.743 6 C 0.514 3.486 7 O -0.504 6.504 8 C -0.116 4.116 9 C 0.056 3.944 10 H 0.050 0.950 11 C -0.487 4.487 12 H 0.070 0.930 13 C 0.085 3.915 14 N -0.901 5.901 15 Si 0.870 3.130 16 H -0.276 1.276 17 H -0.255 1.255 18 H -0.295 1.295 19 C -0.039 4.039 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.150 4.150 23 C -0.128 4.128 24 C -0.135 4.135 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.395 0.605 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 -6.456 -1.224 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.027 4.027 4 C 0.000 4.000 5 N -0.399 5.399 6 C 0.300 3.700 7 O -0.376 6.376 8 C -0.156 4.156 9 C 0.036 3.964 10 H 0.068 0.932 11 C -0.524 4.524 12 H 0.088 0.912 13 C -0.117 4.117 14 N -0.538 5.538 15 Si 0.698 3.302 16 H -0.202 1.202 17 H -0.180 1.180 18 H -0.222 1.222 19 C -0.040 4.040 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.168 4.168 23 C -0.146 4.146 24 C -0.153 4.153 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.229 0.771 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.379 -6.250 -0.512 15.687 hybrid contribution 0.085 -0.383 0.215 0.447 sum -14.294 -6.633 -0.298 15.761 Atomic orbital electron populations 1.22741 0.81217 1.02734 0.99872 1.87962 1.19511 1.27789 1.95397 1.22851 0.93810 0.85040 1.00998 1.21227 0.90842 0.99395 0.88543 1.46044 1.08184 1.65607 1.20099 1.20815 0.81024 0.78646 0.89491 1.90740 1.52103 1.48529 1.46255 1.21649 0.99716 0.99412 0.94854 1.18135 0.89936 0.96900 0.91389 0.93213 1.20595 1.07917 0.92547 1.31327 0.91164 1.24879 0.96733 0.95026 0.95042 1.69889 1.20587 1.20377 1.42995 0.86953 0.77958 0.84032 0.81250 1.20233 1.17956 1.22203 1.20770 0.94590 0.92038 0.96574 1.20981 0.99857 0.99196 0.91801 1.21054 1.00128 0.95203 0.98275 1.20859 1.02665 0.96636 0.96627 1.20961 1.01151 0.99455 0.93006 1.21154 1.00907 0.95241 0.98004 0.89679 0.94183 0.94081 0.91992 0.92593 0.91191 0.90172 0.77124 0.89842 0.91359 0.92938 0.86197 0.87225 0.87476 0.87428 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.37 10.65 -35.23 -0.38 -4.75 16 3 C 0.05 0.51 6.07 37.16 0.23 0.73 16 4 C 0.12 1.72 6.06 -4.04 -0.02 1.69 16 5 N -0.74 -11.46 5.50 -60.29 -0.33 -11.80 16 6 C 0.51 10.35 7.58 -10.99 -0.08 10.27 16 7 O -0.50 -12.72 15.02 5.55 0.08 -12.63 16 8 C -0.12 -2.21 4.96 -27.88 -0.14 -2.35 16 9 C 0.06 1.29 1.17 -92.92 -0.11 1.19 16 10 H 0.05 1.23 4.94 -51.93 -0.26 0.98 16 11 C -0.49 -13.50 6.88 -34.44 -0.24 -13.73 16 12 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 13 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 14 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 15 Si 0.87 22.96 27.00 -169.99 -4.59 18.37 16 16 H -0.28 -7.49 7.11 56.52 0.40 -7.08 16 17 H -0.26 -6.22 4.72 56.52 0.27 -5.95 16 18 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 19 C -0.04 -0.83 4.65 -104.62 -0.49 -1.32 16 20 C -0.10 -1.98 8.93 -39.58 -0.35 -2.33 16 21 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 22 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 23 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 24 C -0.13 -2.68 8.70 -39.59 -0.34 -3.03 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.40 4.98 8.47 -40.82 -0.35 4.64 16 33 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 36 H 0.12 2.35 7.87 -52.49 -0.41 1.93 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.11 2.17 7.12 -52.48 -0.37 1.80 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -34.76 334.83 -7.27 -42.04 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.15 Total: 4.58 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.73 Total: -13.18 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.44 Total: -39.46 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.29 Total: -17.38 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.59 Total: 18.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.76 -7.27 -42.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353333582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.875 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds