Wall clock time and date at job start Mon Mar 30 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00243 * 2 1 4 4 C 1.52995 * 109.47152 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47121 * 64.99937 * 4 3 2 6 6 C 1.34769 * 119.99929 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00156 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47348 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47385 * 53.81101 * 9 8 6 11 11 C 1.50707 * 109.46800 * 293.80633 * 9 8 6 12 12 H 1.07996 * 119.99939 * 324.79144 * 11 9 8 13 13 C 1.37876 * 119.99516 * 144.79724 * 11 9 8 14 14 N 1.31517 * 119.99498 * 181.40280 * 13 11 9 15 15 Si 1.86799 * 120.00347 * 1.40222 * 13 11 9 16 16 H 1.48496 * 109.47059 * 267.09616 * 15 13 11 17 17 H 1.48498 * 109.46945 * 27.10055 * 15 13 11 18 18 H 1.48502 * 109.46861 * 147.09689 * 15 13 11 19 19 C 1.50699 * 109.46966 * 173.80920 * 9 8 6 20 20 C 1.38237 * 120.00135 * 66.64777 * 19 9 8 21 21 C 1.38237 * 120.00124 * 179.80917 * 20 19 9 22 22 C 1.38241 * 119.99834 * 0.39586 * 21 20 19 23 23 C 1.38239 * 119.99727 * 359.85702 * 22 21 20 24 24 C 1.38229 * 120.00171 * 359.95425 * 23 22 21 25 25 H 1.08999 * 109.46915 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47026 * 300.00481 * 1 2 3 27 27 H 1.09000 * 109.47073 * 60.00160 * 1 2 3 28 28 H 1.09002 * 109.46905 * 59.99495 * 3 2 1 29 29 H 1.08995 * 109.46750 * 300.00079 * 3 2 1 30 30 H 1.08999 * 109.47126 * 305.00121 * 4 3 2 31 31 H 1.09003 * 109.46688 * 184.99500 * 4 3 2 32 32 H 0.97005 * 119.99423 * 0.02562 * 5 4 3 33 33 H 1.09004 * 109.46561 * 60.00018 * 8 6 5 34 34 H 1.09003 * 109.46933 * 300.01124 * 8 6 5 35 35 H 0.96996 * 119.99967 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.00352 * 359.97438 * 20 19 9 37 37 H 1.07995 * 120.00255 * 180.23001 * 21 20 19 38 38 H 1.07995 * 119.99860 * 179.82910 * 22 21 20 39 39 H 1.08003 * 119.99758 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99873 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 5.2895 0.3559 -1.4737 7 8 6.1056 0.6821 -0.6380 8 6 5.7434 -0.2832 -2.7609 9 6 7.2686 -0.4039 -2.7603 10 1 7.5914 -0.9257 -1.8595 11 6 7.8814 0.9726 -2.7905 12 1 7.4021 1.7649 -3.3462 13 6 9.0540 1.2202 -2.1089 14 7 9.5741 2.4281 -2.1125 15 14 9.9038 -0.1599 -1.1801 16 1 9.4461 -0.1611 0.2325 17 1 9.5672 -1.4615 -1.8108 18 1 11.3738 0.0458 -1.2240 19 6 7.7116 -1.1779 -3.9751 20 6 7.5368 -0.6424 -5.2375 21 6 7.9468 -1.3506 -6.3516 22 6 8.5242 -2.5979 -6.2038 23 6 8.6942 -3.1356 -4.9417 24 6 8.2878 -2.4257 -3.8274 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1765 0.0901 32 1 3.3239 0.3033 -1.9195 33 1 5.4275 0.3324 -3.6032 34 1 5.3006 -1.2752 -2.8498 35 1 10.3989 2.6024 -1.6326 36 1 7.0823 0.3305 -5.3532 37 1 7.8137 -0.9306 -7.3376 38 1 8.8420 -3.1524 -7.0743 39 1 9.1449 -4.1103 -4.8262 40 1 8.4210 -2.8457 -2.8413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353333582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:41 Heat of formation + Delta-G solvation = -87.790495 kcal Electronic energy + Delta-G solvation = -21293.601628 eV Core-core repulsion = 18072.176405 eV Total energy + Delta-G solvation = -3221.425223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76435 -39.83261 -38.81649 -36.04243 -35.40268 -33.70787 -31.59703 -31.29401 -29.96115 -27.81303 -26.97148 -24.48614 -23.43361 -23.15180 -21.70572 -20.77852 -18.99294 -18.08602 -17.62543 -17.30731 -17.22503 -16.47630 -16.19255 -16.06572 -15.67411 -15.43779 -15.28163 -14.80465 -14.40494 -14.21089 -14.04310 -13.87605 -13.45921 -13.30286 -13.07192 -12.84916 -12.64751 -12.62548 -12.13642 -12.02069 -11.87605 -11.76901 -11.47406 -11.03279 -10.75078 -10.64457 -10.46464 -9.93488 -9.59351 -9.27935 -8.20633 -6.17157 0.70425 0.75290 1.32792 1.38170 1.43396 1.95517 2.40312 2.43238 2.82773 3.10647 3.25982 3.94872 4.13384 4.16386 4.20287 4.32720 4.34159 4.43653 4.47579 4.51194 4.57257 4.60412 4.64881 4.70958 4.85988 4.88243 4.90888 4.91866 5.12913 5.22259 5.40260 5.43131 5.61931 5.71118 5.78913 5.85040 6.05298 6.21619 6.35341 6.38692 6.77501 6.82131 7.47188 7.57006 8.96417 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.005203 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.479084 B = 5379.933961 C = 6496.744521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.061 3.939 4 C 0.119 3.881 5 N -0.723 5.723 6 C 0.508 3.492 7 O -0.566 6.566 8 C -0.112 4.112 9 C 0.056 3.944 10 H 0.031 0.969 11 C -0.463 4.463 12 H 0.036 0.964 13 C 0.023 3.977 14 N -0.954 5.954 15 Si 0.918 3.082 16 H -0.292 1.292 17 H -0.224 1.224 18 H -0.296 1.296 19 C -0.063 4.063 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.152 4.152 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.412 0.588 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.257 0.743 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.876 -9.048 -3.071 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.016 4.016 4 C -0.005 4.005 5 N -0.378 5.378 6 C 0.296 3.704 7 O -0.443 6.443 8 C -0.152 4.152 9 C 0.037 3.963 10 H 0.049 0.951 11 C -0.501 4.501 12 H 0.054 0.946 13 C -0.173 4.173 14 N -0.596 5.596 15 Si 0.745 3.255 16 H -0.219 1.219 17 H -0.147 1.147 18 H -0.223 1.223 19 C -0.064 4.064 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.158 4.158 23 C -0.143 4.143 24 C -0.170 4.170 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.056 -8.883 -2.397 18.506 hybrid contribution 0.410 0.380 0.683 0.882 sum -15.646 -8.504 -1.715 17.890 Atomic orbital electron populations 1.22932 0.79239 1.03765 1.01089 1.87910 1.21659 1.28168 1.95673 1.22748 0.90722 0.85241 1.02892 1.21337 0.93866 0.98234 0.87067 1.45850 1.06987 1.64006 1.20961 1.21083 0.82030 0.78109 0.89195 1.90720 1.54005 1.51413 1.48152 1.21583 0.97258 1.01541 0.94769 1.18014 0.92235 0.94122 0.91924 0.95065 1.20817 1.06589 0.94132 1.28564 0.94614 1.25604 0.98159 0.96798 0.96746 1.70027 1.21566 1.22456 1.45568 0.86179 0.76684 0.83305 0.79313 1.21886 1.14664 1.22334 1.20486 0.96700 0.93224 0.95956 1.21016 1.00974 0.99280 0.92340 1.21397 0.98912 0.95381 0.98678 1.21338 1.00627 0.96140 0.97681 1.21332 1.00040 1.00441 0.92462 1.21259 1.01474 0.95177 0.99098 0.88852 0.93029 0.92770 0.89881 0.90822 0.92821 0.91182 0.75121 0.88554 0.87909 0.93384 0.87263 0.84329 0.83589 0.84243 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.52 10.65 -148.98 -1.59 -10.11 16 3 C 0.06 1.12 6.07 71.98 0.44 1.56 16 4 C 0.12 3.29 6.06 86.38 0.52 3.81 16 5 N -0.72 -21.94 5.50 -463.06 -2.55 -24.48 16 6 C 0.51 20.78 7.58 87.66 0.66 21.44 16 7 O -0.57 -29.73 15.02 -3.04 -0.05 -29.77 16 8 C -0.11 -4.21 4.96 29.85 0.15 -4.06 16 9 C 0.06 2.64 1.17 -12.29 -0.01 2.62 16 10 H 0.03 1.57 4.94 -2.39 -0.01 1.55 16 11 C -0.46 -26.65 6.88 25.60 0.18 -26.47 16 12 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 13 C 0.02 1.41 5.47 84.65 0.46 1.88 16 14 N -0.95 -63.32 13.96 21.45 0.30 -63.02 16 15 Si 0.92 48.86 27.00 68.60 1.85 50.72 16 16 H -0.29 -16.12 7.11 99.48 0.71 -15.41 16 17 H -0.22 -10.62 4.72 99.48 0.47 -10.15 16 18 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 19 C -0.06 -2.61 4.65 -19.87 -0.09 -2.71 16 20 C -0.12 -4.49 8.93 22.27 0.20 -4.29 16 21 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 22 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 23 C -0.12 -3.82 10.05 22.27 0.22 -3.59 16 24 C -0.15 -5.69 8.70 22.27 0.19 -5.49 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.41 9.68 8.47 -92.70 -0.79 8.90 16 33 H 0.10 3.37 8.05 -2.38 -0.02 3.35 16 34 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 36 H 0.11 4.28 7.87 -2.91 -0.02 4.26 16 37 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 38 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 39 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.11 4.04 7.12 -2.91 -0.02 4.02 16 Total: -1.00 -80.03 334.83 2.59 -77.43 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.00 Total: 20.35 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 4.62 Total: -21.11 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -2.25 Total: -87.50 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.63 Total: -39.88 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.85 Total: 50.72 kcal Total: -80.03 2.59 -77.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353333582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.357 kcal (2) G-P(sol) polarization free energy of solvation -80.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds