Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00349 * 2 1 4 4 C 1.53001 * 109.47396 * 270.00931 * 3 2 1 5 5 O 1.42901 * 109.47347 * 64.99748 * 4 3 2 6 6 C 1.34777 * 120.00092 * 180.02562 * 2 1 3 7 7 O 1.21283 * 120.00046 * 179.97438 * 6 2 1 8 8 C 1.50698 * 119.99686 * 359.97438 * 6 2 1 9 9 C 1.53005 * 109.46990 * 180.02562 * 8 6 2 10 10 H 1.08994 * 109.46934 * 305.97546 * 9 8 6 11 11 C 1.50700 * 109.47299 * 65.97885 * 9 8 6 12 12 H 1.08008 * 119.99531 * 26.90748 * 11 9 8 13 13 C 1.37869 * 120.00160 * 206.90965 * 11 9 8 14 14 N 1.31508 * 120.00032 * 353.27812 * 13 11 9 15 15 Si 1.86806 * 120.00073 * 173.54969 * 13 11 9 16 16 H 1.48497 * 109.46895 * 179.72442 * 15 13 11 17 17 H 1.48495 * 109.46957 * 299.72695 * 15 13 11 18 18 H 1.48501 * 109.46761 * 59.72686 * 15 13 11 19 19 C 1.50705 * 109.47056 * 185.97689 * 9 8 6 20 20 C 1.38237 * 120.00118 * 294.44966 * 19 9 8 21 21 C 1.38237 * 119.99818 * 179.78603 * 20 19 9 22 22 C 1.38236 * 120.00003 * 0.44191 * 21 20 19 23 23 C 1.38236 * 119.99991 * 359.81061 * 22 21 20 24 24 C 1.38228 * 119.99825 * 114.71859 * 19 9 8 25 25 H 1.08998 * 109.46580 * 270.00058 * 1 2 3 26 26 H 1.09007 * 109.46909 * 29.99033 * 1 2 3 27 27 H 1.08999 * 109.47455 * 149.99624 * 1 2 3 28 28 H 1.08999 * 109.46865 * 30.00646 * 3 2 1 29 29 H 1.08999 * 109.47437 * 150.00296 * 3 2 1 30 30 H 1.08999 * 109.46646 * 184.99964 * 4 3 2 31 31 H 1.08997 * 109.46644 * 304.99226 * 4 3 2 32 32 H 0.96698 * 113.99587 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47229 * 60.00363 * 8 6 2 34 34 H 1.09003 * 109.47630 * 300.00294 * 8 6 2 35 35 H 0.97008 * 120.00303 * 354.69126 * 14 13 11 36 36 H 1.08005 * 119.99967 * 359.97438 * 20 19 9 37 37 H 1.07999 * 119.99448 * 180.27078 * 21 20 19 38 38 H 1.07997 * 119.99991 * 179.83259 * 22 21 20 39 39 H 1.07993 * 119.99965 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.00249 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 8 1.2059 1.9938 -2.0813 6 6 2.1389 -1.1672 -0.0005 7 8 3.3517 -1.1672 -0.0010 8 6 1.3854 -2.4723 -0.0005 9 6 2.3796 -3.6352 -0.0005 10 1 3.0745 -3.5191 -0.8321 11 6 3.1457 -3.6412 1.2972 12 1 2.7013 -3.2233 2.1885 13 6 4.4137 -4.1801 1.3467 14 7 4.9034 -4.8063 0.2991 15 14 5.4333 -4.0274 2.9045 16 1 6.7466 -4.6907 2.7035 17 1 5.6467 -2.5916 3.2177 18 1 4.7171 -4.6787 4.0306 19 6 1.6319 -4.9353 -0.1485 20 6 0.7743 -5.3570 0.8503 21 6 0.0851 -6.5474 0.7126 22 6 0.2605 -7.3206 -0.4198 23 6 1.1221 -6.9014 -1.4163 24 6 1.8079 -5.7088 -1.2805 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6086 2.0283 0.5139 29 1 3.1500 1.1384 0.5138 30 1 3.0732 2.6065 -1.4437 31 1 2.9641 0.9133 -1.9815 32 1 1.2914 2.2800 -3.0009 33 1 0.7584 -2.5298 -0.8903 34 1 0.7589 -2.5302 0.8897 35 1 4.3461 -4.9566 -0.4805 36 1 0.6404 -4.7549 1.7370 37 1 -0.5882 -6.8747 1.4910 38 1 -0.2758 -8.2519 -0.5262 39 1 1.2588 -7.5052 -2.3012 40 1 2.4809 -5.3813 -2.0590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354380055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = -65.246619 kcal Electronic energy + Delta-G solvation = -21888.399235 eV Core-core repulsion = 18667.951588 eV Total energy + Delta-G solvation = -3220.447647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.43557 -38.38066 -36.86864 -34.81389 -34.17696 -31.39620 -30.14107 -30.06912 -28.49036 -26.12697 -25.02553 -23.18240 -22.19649 -21.61103 -19.94571 -18.52721 -17.54195 -16.80388 -16.33295 -15.92266 -15.67290 -15.33376 -14.35287 -14.10911 -14.07561 -13.65979 -13.49142 -12.97179 -12.76968 -12.59245 -12.35685 -12.23222 -12.16901 -11.95412 -11.77736 -11.40909 -11.27804 -10.84417 -10.70348 -10.41389 -10.12162 -10.07440 -10.02457 -9.64283 -8.97150 -8.59123 -8.28095 -8.18509 -8.12525 -7.62090 -6.20514 -3.89024 2.20393 2.26018 3.45142 3.47700 3.51218 3.56413 3.72308 4.28018 4.62240 4.69387 5.10038 5.21690 5.32681 5.40638 5.46027 5.60508 5.61379 5.64701 5.72040 5.77741 5.89736 5.93582 6.00892 6.03499 6.14641 6.19524 6.33320 6.44388 6.69218 6.79749 6.91678 6.97724 7.22580 7.24494 7.39640 7.54630 7.74958 7.87044 7.94100 8.25402 8.53765 8.97654 9.01759 9.79691 11.18938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.006530 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.018900 B = 4286.596356 C = 5629.391859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.628 5.628 3 C 0.120 3.880 4 C 0.059 3.941 5 O -0.572 6.572 6 C 0.514 3.486 7 O -0.502 6.502 8 C -0.113 4.113 9 C 0.072 3.928 10 H 0.048 0.952 11 C -0.566 4.566 12 H 0.044 0.956 13 C 0.031 3.969 14 N -0.907 5.907 15 Si 1.060 2.940 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.291 1.291 19 C -0.033 4.033 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.125 4.125 24 C -0.130 4.130 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.374 0.626 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.271 0.729 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 8.086 -3.360 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.365 5.365 3 C -0.004 4.004 4 C -0.020 4.020 5 O -0.377 6.377 6 C 0.303 3.697 7 O -0.374 6.374 8 C -0.153 4.153 9 C 0.053 3.947 10 H 0.067 0.933 11 C -0.604 4.604 12 H 0.063 0.937 13 C -0.174 4.174 14 N -0.542 5.542 15 Si 0.889 3.111 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.217 1.217 19 C -0.033 4.033 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.171 4.171 23 C -0.143 4.143 24 C -0.149 4.149 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.220 0.780 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.449 7.563 -2.111 11.534 hybrid contribution -1.323 0.438 -1.111 1.782 sum -9.772 8.001 -3.222 13.034 Atomic orbital electron populations 1.21669 0.80062 1.03071 1.00765 1.47935 1.06692 1.05510 1.76342 1.21358 0.98755 0.85803 0.94468 1.22697 0.85487 0.98774 0.94992 1.86461 1.31132 1.90271 1.29852 1.20923 0.88480 0.84892 0.75439 1.90730 1.13694 1.86637 1.46312 1.21670 0.99132 0.93217 1.01291 1.17875 0.91529 0.85211 1.00052 0.93346 1.21529 1.02407 1.42491 0.93931 0.93721 1.25573 0.95944 0.93246 1.02632 1.70730 1.39732 1.38230 1.05519 0.83686 0.76356 0.76233 0.74789 1.20949 1.21531 1.21735 1.20858 0.92256 0.98840 0.91382 1.20925 0.96746 0.96108 0.98646 1.21014 1.00554 0.95718 0.97510 1.20823 1.01050 0.99801 0.95391 1.20959 0.97850 0.96778 0.98677 1.21070 1.00094 0.95466 0.98225 0.93643 0.90908 0.91420 0.90681 0.88591 0.93240 0.93051 0.77981 0.91713 0.90327 0.91810 0.86702 0.87450 0.87588 0.87468 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 10.06 59.85 0.60 1.73 16 2 N -0.63 -10.28 2.84 -181.57 -0.52 -10.79 16 3 C 0.12 1.71 5.81 -4.04 -0.02 1.69 16 4 C 0.06 0.75 7.39 37.16 0.27 1.02 16 5 O -0.57 -6.58 12.48 -35.23 -0.44 -7.02 16 6 C 0.51 10.70 7.43 -10.99 -0.08 10.62 16 7 O -0.50 -12.70 14.60 5.55 0.08 -12.62 16 8 C -0.11 -2.28 3.51 -27.88 -0.10 -2.38 16 9 C 0.07 1.77 1.23 -92.92 -0.11 1.65 16 10 H 0.05 1.34 6.59 -51.93 -0.34 0.99 16 11 C -0.57 -15.62 6.35 -34.44 -0.22 -15.84 16 12 H 0.04 1.24 7.82 -52.48 -0.41 0.83 16 13 C 0.03 0.92 5.45 -17.83 -0.10 0.82 16 14 N -0.91 -27.95 13.56 55.43 0.75 -27.20 16 15 Si 1.06 26.49 29.91 -169.99 -5.08 21.40 16 16 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.03 -0.73 4.53 -104.62 -0.47 -1.21 16 20 C -0.11 -2.20 8.90 -39.58 -0.35 -2.55 16 21 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 22 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 23 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 24 C -0.13 -2.76 9.18 -39.58 -0.36 -3.12 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.86 7.12 -51.93 -0.37 0.49 16 27 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 28 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.10 1.51 7.42 -51.93 -0.39 1.12 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.37 2.69 9.12 45.56 0.42 3.11 16 33 H 0.06 1.16 7.40 -51.93 -0.38 0.78 16 34 H 0.08 1.50 7.93 -51.93 -0.41 1.09 16 35 H 0.27 8.22 6.24 -40.82 -0.25 7.96 16 36 H 0.11 2.34 7.85 -52.48 -0.41 1.92 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -34.50 333.23 -7.38 -41.88 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.06 Total: 5.44 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -2.14 Total: -16.12 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.24 Total: -37.99 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.36 Total: -19.64 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -5.08 Total: 21.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.50 -7.38 -41.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354380055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.366 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds