Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35993 * 117.00013 * 2 1 4 4 C 1.38564 * 120.07415 * 359.97438 * 3 2 1 5 5 C 1.38238 * 119.99933 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.14955 * 0.02749 * 5 4 3 7 7 C 1.38242 * 120.14529 * 359.97438 * 6 5 4 8 8 C 1.38564 * 119.99922 * 359.97438 * 7 6 5 9 9 O 1.35998 * 120.07372 * 179.97438 * 8 7 6 10 10 C 1.42904 * 116.99840 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.46867 * 179.97438 * 10 9 8 12 12 N 1.46502 * 109.46892 * 65.00476 * 11 10 9 13 13 C 1.36937 * 119.99773 * 269.99735 * 12 11 10 14 14 H 1.07999 * 120.00031 * 143.95345 * 13 12 11 15 15 C 1.38814 * 120.00179 * 323.95532 * 13 12 11 16 16 N 1.31624 * 119.99697 * 339.43084 * 15 13 12 17 17 Si 1.86798 * 120.00388 * 159.42849 * 15 13 12 18 18 H 1.48499 * 109.46964 * 59.99760 * 17 15 13 19 19 H 1.48500 * 109.47229 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46982 * 299.99835 * 17 15 13 21 21 C 1.46497 * 120.00488 * 89.99616 * 12 11 10 22 22 C 1.52994 * 117.50146 * 183.23510 * 21 12 11 23 23 C 1.53002 * 117.50118 * 114.57408 * 21 12 11 24 24 H 1.09001 * 109.46893 * 300.00533 * 1 2 3 25 25 H 1.09003 * 109.47069 * 60.00790 * 1 2 3 26 26 H 1.08999 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00070 * 0.28346 * 4 3 2 28 28 H 1.07998 * 119.92639 * 179.97438 * 5 4 3 29 29 H 1.08005 * 119.93283 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.00061 * 180.02562 * 7 6 5 31 31 H 1.08996 * 109.47174 * 299.99888 * 10 9 8 32 32 H 1.09005 * 109.47024 * 60.00248 * 10 9 8 33 33 H 1.09001 * 109.47074 * 184.99863 * 11 10 9 34 34 H 1.08997 * 109.47420 * 305.00402 * 11 10 9 35 35 H 0.96996 * 119.99944 * 175.48506 * 16 15 13 36 36 H 1.09003 * 115.54862 * 328.90506 * 21 12 11 37 37 H 1.09005 * 117.50161 * 0.02562 * 22 21 12 38 38 H 1.09002 * 117.50047 * 145.01948 * 22 21 12 39 39 H 1.09003 * 117.49828 * 214.98378 * 23 21 12 40 40 H 1.08998 * 117.49689 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3029 3.6798 -0.0016 7 6 4.0603 2.5233 -0.0012 8 6 3.4359 1.2863 0.0005 9 8 4.1795 0.1476 0.0004 10 6 5.6004 0.3006 -0.0008 11 6 6.2618 -1.0790 0.0000 12 7 5.9457 -1.7727 -1.2510 13 6 4.8292 -2.5612 -1.3334 14 1 4.2621 -2.6001 -2.2517 15 6 4.4262 -3.3106 -0.2366 16 7 5.2865 -3.5949 0.7181 17 14 2.6630 -3.9155 -0.1155 18 1 2.3582 -4.7881 -1.2777 19 1 2.4894 -4.6862 1.1419 20 1 1.7397 -2.7524 -0.1140 21 6 6.8240 -1.6230 -2.4139 22 6 6.4000 -2.3112 -3.7128 23 6 7.5718 -2.8665 -2.8993 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.2147 2.3197 0.0037 28 1 1.3342 4.5114 -0.0019 29 1 3.7909 4.6434 -0.0025 30 1 5.1386 2.5840 -0.0012 31 1 5.9059 0.8500 -0.8912 32 1 5.9073 0.8508 0.8888 33 1 7.3421 -0.9639 0.0887 34 1 5.8880 -1.6607 0.8426 35 1 4.9900 -4.0617 1.5150 36 1 7.3356 -0.6640 -2.4962 37 1 5.4672 -2.8752 -3.7023 38 1 6.6329 -1.8053 -4.6498 39 1 8.5751 -2.7255 -3.3013 40 1 7.4105 -3.7959 -2.3532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355969760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = 9.551002 kcal Electronic energy + Delta-G solvation = -22222.308751 eV Core-core repulsion = 19005.104572 eV Total energy + Delta-G solvation = -3217.204179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04541 -38.01693 -36.93235 -36.26977 -33.43488 -31.05766 -30.00657 -29.55812 -27.76571 -26.90525 -24.36523 -22.61496 -21.89374 -21.36289 -20.83860 -19.54890 -18.21263 -16.82777 -16.36478 -15.92466 -15.56382 -15.24576 -14.85650 -14.53839 -14.31820 -14.24603 -13.80871 -13.63509 -12.70900 -12.55214 -12.11202 -12.02362 -11.82772 -11.73667 -11.12134 -10.92290 -10.83600 -10.81740 -10.66510 -10.51455 -10.44071 -10.03566 -9.98673 -9.64304 -9.53519 -9.21922 -8.44809 -8.29672 -7.33285 -6.46683 -5.64579 -3.25082 1.57076 1.77985 3.50439 3.54616 3.64500 3.70353 3.95440 4.04586 4.62716 4.99221 5.02773 5.14930 5.23847 5.26985 5.35823 5.37384 5.52478 5.62206 5.70284 5.72422 5.88184 5.91977 5.95113 6.01926 6.13815 6.30962 6.38425 6.47608 6.53953 6.57221 6.68635 6.69264 6.74075 7.00259 7.08980 7.27310 7.58385 7.68247 7.94011 8.24721 8.61316 9.26408 9.90946 10.43176 11.32921 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.007237 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.844980 B = 3868.135214 C = 4957.161088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.291 6.291 3 C 0.092 3.908 4 C -0.178 4.178 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.187 4.187 8 C 0.119 3.881 9 O -0.260 6.260 10 C 0.043 3.957 11 C 0.141 3.859 12 N -0.545 5.545 13 C -0.238 4.238 14 H 0.061 0.939 15 C 0.020 3.980 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.287 1.287 19 H -0.295 1.295 20 H -0.265 1.265 21 C 0.118 3.882 22 C -0.195 4.195 23 C -0.221 4.221 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 12.155 -0.818 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.203 6.203 3 C 0.046 3.954 4 C -0.197 4.197 5 C -0.156 4.156 6 C -0.137 4.137 7 C -0.206 4.206 8 C 0.071 3.929 9 O -0.172 6.172 10 C -0.035 4.035 11 C 0.015 3.985 12 N -0.261 5.261 13 C -0.368 4.368 14 H 0.078 0.922 15 C -0.180 4.180 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.214 1.214 19 H -0.222 1.222 20 H -0.190 1.190 21 C 0.009 3.991 22 C -0.233 4.233 23 C -0.262 4.262 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.145 0.855 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.432 11.587 -0.662 12.423 hybrid contribution -0.976 0.065 0.044 0.979 sum -5.407 11.652 -0.618 12.860 Atomic orbital electron populations 1.22993 0.79700 1.03642 1.00419 1.86404 1.19994 1.25357 1.88587 1.18396 0.89645 0.85233 1.02107 1.20975 0.99480 0.91751 1.07506 1.20659 0.94490 0.96559 1.03853 1.20757 0.93699 0.97516 1.01776 1.21087 1.00357 0.91267 1.07904 1.18651 0.88933 0.87446 0.97892 1.86588 1.18759 1.25426 1.86380 1.23899 0.78663 1.02761 0.98188 1.21128 0.95039 0.88895 0.93483 1.43311 1.24403 1.51474 1.06953 1.18828 1.00104 1.18062 0.99771 0.92168 1.24984 0.97766 0.96291 0.98914 1.69979 1.32318 1.41873 1.09463 0.86548 0.86551 0.78578 0.76381 1.21407 1.22155 1.18994 1.21230 0.95851 0.92770 0.89242 1.23015 1.00057 1.05954 0.94318 1.23363 0.94062 1.02660 1.06115 0.93252 0.93137 0.88631 0.85488 0.86392 0.86327 0.85129 0.93931 0.94099 0.93160 0.87020 0.93770 0.89825 0.88450 0.90906 0.91341 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.29 -5.89 10.28 -34.22 -0.35 -6.24 16 3 C 0.09 1.73 6.70 -39.12 -0.26 1.47 16 4 C -0.18 -2.65 9.04 -39.46 -0.36 -3.01 16 5 C -0.14 -1.83 10.04 -39.58 -0.40 -2.23 16 6 C -0.12 -1.64 10.04 -39.58 -0.40 -2.04 16 7 C -0.19 -3.04 9.04 -39.46 -0.36 -3.39 16 8 C 0.12 2.35 6.70 -39.12 -0.26 2.08 16 9 O -0.26 -5.96 9.40 -34.23 -0.32 -6.28 16 10 C 0.04 0.85 5.08 37.16 0.19 1.04 16 11 C 0.14 3.25 5.76 -4.04 -0.02 3.23 16 12 N -0.55 -13.54 2.75 -165.67 -0.46 -14.00 16 13 C -0.24 -6.58 8.11 -15.06 -0.12 -6.70 16 14 H 0.06 1.71 6.58 -52.49 -0.35 1.36 16 15 C 0.02 0.56 4.99 -17.43 -0.09 0.47 16 16 N -0.89 -25.93 11.30 55.49 0.63 -25.30 16 17 Si 0.89 22.56 29.60 -169.99 -5.03 17.53 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 20 H -0.26 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.12 2.56 6.56 -67.93 -0.45 2.11 16 22 C -0.20 -3.97 9.80 -26.70 -0.26 -4.23 16 23 C -0.22 -4.56 10.36 -26.69 -0.28 -4.84 16 24 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 25 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 26 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.13 1.91 6.30 -52.49 -0.33 1.58 16 31 H 0.04 0.80 7.66 -51.93 -0.40 0.40 16 32 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 33 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 34 H 0.11 2.97 5.36 -51.93 -0.28 2.69 16 35 H 0.25 7.17 8.32 -40.82 -0.34 6.83 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.10 2.18 6.39 -51.93 -0.33 1.85 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -31.45 331.49 -8.33 -39.78 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.72 Total: 4.17 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.07 Total: -14.64 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.17 Total: -39.30 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.67 Total: -12.52 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.45 -8.33 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355969760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.326 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds